Wall clock time and date at job start Tue Mar 31 2020 18:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00086 * 2 1 4 4 H 1.48501 * 109.46968 * 274.98216 * 3 2 1 5 5 H 1.48501 * 109.47009 * 34.97922 * 3 2 1 6 6 H 1.48495 * 109.47436 * 154.97769 * 3 2 1 7 7 C 1.38816 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99594 * 171.67028 * 7 2 1 9 9 N 1.36936 * 120.00189 * 351.66995 * 7 2 1 10 10 C 1.47155 * 126.52026 * 344.43794 * 9 7 2 11 11 C 1.53837 * 106.27992 * 210.82263 * 10 9 7 12 12 C 1.53676 * 105.56133 * 340.70367 * 11 10 9 13 13 C 1.52998 * 111.17459 * 122.04181 * 12 11 10 14 14 N 1.46498 * 109.47289 * 62.60011 * 13 12 11 15 15 C 1.34777 * 119.99797 * 179.97438 * 14 13 12 16 16 O 1.21285 * 120.00132 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99971 * 180.27476 * 15 14 13 18 18 C 1.52989 * 109.47394 * 179.72767 * 17 15 14 19 19 C 1.50700 * 109.47394 * 180.02562 * 18 17 15 20 20 C 1.35354 * 126.90999 * 84.99970 * 19 18 17 21 21 N 1.33774 * 106.49461 * 179.97438 * 20 19 18 22 22 N 1.28636 * 108.88483 * 0.02562 * 21 20 19 23 23 N 1.28715 * 110.17643 * 359.74965 * 22 21 20 24 24 H 0.96999 * 125.86367 * 180.23964 * 23 22 21 25 25 C 1.53514 * 110.45098 * 245.92822 * 12 11 10 26 26 C 1.54191 * 106.58308 * 116.98072 * 25 12 11 27 27 C 1.54729 * 104.35145 * 335.42857 * 26 25 12 28 28 C 1.47252 * 126.51876 * 164.39643 * 9 7 2 29 29 H 1.09006 * 112.28429 * 26.95270 * 28 9 7 30 30 H 0.97001 * 120.00286 * 0.02562 * 1 2 3 31 31 H 1.08998 * 110.09297 * 330.03104 * 10 9 7 32 32 H 1.09005 * 110.08891 * 91.56126 * 10 9 7 33 33 H 1.09000 * 110.23533 * 221.67915 * 11 10 9 34 34 H 1.09000 * 110.23049 * 99.72639 * 11 10 9 35 35 H 1.09001 * 109.47253 * 302.59845 * 13 12 11 36 36 H 1.08999 * 109.47028 * 182.60414 * 13 12 11 37 37 H 0.96998 * 119.99840 * 0.02562 * 14 13 12 38 38 H 1.09006 * 109.47325 * 299.73187 * 17 15 14 39 39 H 1.08999 * 109.46886 * 59.72688 * 17 15 14 40 40 H 1.09004 * 109.47716 * 300.00283 * 18 17 15 41 41 H 1.09007 * 109.46938 * 60.00313 * 18 17 15 42 42 H 1.08000 * 126.75309 * 359.94642 * 20 19 18 43 43 H 1.09002 * 110.04394 * 237.08022 * 25 12 11 44 44 H 1.08991 * 110.04644 * 358.54364 * 25 12 11 45 45 H 1.09004 * 110.80092 * 216.49810 * 26 25 12 46 46 H 1.09004 * 110.11043 * 94.02358 * 26 25 12 47 47 H 1.09000 * 110.65217 * 278.62843 * 27 26 25 48 48 H 1.09002 * 110.65227 * 155.53452 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3924 2.1071 -1.3948 5 1 1.5043 2.6200 0.8026 6 1 3.5964 1.4121 0.5922 7 6 2.0103 -1.2022 0.0005 8 1 3.0817 -1.2072 -0.1350 9 7 1.3364 -2.3818 0.1729 10 6 -0.0361 -2.5403 0.6793 11 6 -0.0727 -3.8938 1.4096 12 6 1.1373 -4.6802 0.8812 13 6 2.0725 -5.0874 2.0216 14 7 1.3630 -5.9822 2.9392 15 6 1.9935 -6.4716 4.0253 16 8 3.1481 -6.1708 4.2431 17 6 1.2655 -7.3969 4.9659 18 6 2.2026 -7.8090 6.1029 19 6 1.4749 -8.7348 7.0432 20 6 1.3349 -10.0753 6.9178 21 7 0.6211 -10.4830 7.9731 22 7 0.3373 -9.4626 8.7032 23 7 0.8341 -8.3941 8.1852 24 1 0.7600 -7.4983 8.5498 25 6 0.6730 -5.9053 0.0812 26 6 1.1680 -5.7002 -1.3646 27 6 1.3200 -4.1668 -1.5041 28 6 1.8472 -3.7327 -0.1141 29 1 2.9332 -3.7888 -0.0384 30 1 -0.4850 0.8400 -0.0004 31 1 -0.2749 -1.7340 1.3727 32 1 -0.7433 -2.5422 -0.1502 33 1 -0.9968 -4.4229 1.1770 34 1 0.0159 -3.7440 2.4856 35 1 2.3973 -4.1973 2.5605 36 1 2.9421 -5.6017 1.6123 37 1 0.4397 -6.2229 2.7648 38 1 0.3962 -6.8851 5.3789 39 1 0.9405 -8.2846 4.4232 40 1 3.0719 -8.3208 5.6900 41 1 2.5276 -6.9212 6.6457 42 1 1.7228 -10.6939 6.1220 43 1 1.0975 -6.8136 0.5089 44 1 -0.4154 -5.9634 0.0849 45 1 0.4384 -6.0781 -2.0809 46 1 2.1299 -6.1935 -1.5049 47 1 0.3561 -3.7022 -1.7118 48 1 2.0421 -3.9212 -2.2828 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107552876.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:38 Heat of formation + Delta-G solvation = 41.405076 kcal Electronic energy + Delta-G solvation = -28682.891811 eV Core-core repulsion = 24773.670860 eV Total energy + Delta-G solvation = -3909.220951 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.26912 -41.34935 -40.22736 -36.30183 -35.44801 -35.23876 -34.12085 -33.41581 -32.03151 -30.98031 -29.41128 -28.44556 -26.47573 -25.58758 -24.75835 -23.94019 -22.62729 -22.15121 -21.65138 -20.86636 -19.68215 -19.20189 -18.90550 -18.00085 -17.07306 -16.91622 -16.74344 -16.57385 -16.10446 -15.61040 -15.41955 -15.25902 -15.13290 -14.94386 -14.61366 -14.21857 -14.10576 -13.88768 -13.59690 -13.37186 -13.24643 -12.87119 -12.74058 -12.70484 -12.49706 -12.26490 -12.17563 -12.01784 -11.81295 -11.76676 -11.67733 -11.57573 -11.54013 -11.43638 -11.36122 -11.06990 -10.85894 -10.61271 -10.12387 -9.98118 -8.79151 -7.89356 -5.22682 0.58079 1.43781 1.44374 1.53845 1.55994 1.74070 1.87676 2.30807 2.48754 3.29519 3.46906 3.57750 3.71983 3.75898 3.76950 3.92696 3.98879 4.06962 4.24130 4.34191 4.34581 4.44085 4.49030 4.53646 4.57604 4.66352 4.67386 4.68065 4.86612 4.92399 4.99303 5.05221 5.09317 5.11360 5.16744 5.21109 5.24521 5.29352 5.40195 5.46425 5.52782 5.58411 5.62582 5.67033 5.81895 5.99272 6.25187 6.66377 7.10057 7.35579 7.45441 7.78792 8.49892 9.23496 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.016661 B = 0.002360 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.164440 B =11860.484368 C =12723.044485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.061 4.061 3 Si 0.970 3.030 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.271 1.271 7 C -0.236 4.236 8 H 0.073 0.927 9 N -0.609 5.609 10 C 0.175 3.825 11 C -0.117 4.117 12 C -0.070 4.070 13 C 0.154 3.846 14 N -0.712 5.712 15 C 0.509 3.491 16 O -0.588 6.588 17 C -0.126 4.126 18 C -0.026 4.026 19 C 0.009 3.991 20 C -0.052 4.052 21 N -0.304 5.304 22 N -0.114 5.114 23 N -0.376 5.376 24 H 0.461 0.539 25 C -0.101 4.101 26 C -0.113 4.113 27 C -0.133 4.133 28 C 0.153 3.847 29 H 0.058 0.942 30 H 0.247 0.753 31 H 0.028 0.972 32 H -0.007 1.007 33 H 0.088 0.912 34 H 0.059 0.941 35 H 0.035 0.965 36 H 0.065 0.935 37 H 0.415 0.585 38 H 0.112 0.888 39 H 0.128 0.872 40 H 0.106 0.894 41 H 0.085 0.915 42 H 0.216 0.784 43 H 0.088 0.912 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.072 0.928 47 H 0.040 0.960 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.007 -19.634 8.529 21.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.255 4.255 3 Si 0.798 3.202 4 H -0.214 1.214 5 H -0.221 1.221 6 H -0.196 1.196 7 C -0.366 4.366 8 H 0.091 0.909 9 N -0.330 5.330 10 C 0.050 3.950 11 C -0.156 4.156 12 C -0.072 4.072 13 C 0.029 3.971 14 N -0.364 5.364 15 C 0.297 3.703 16 O -0.468 6.468 17 C -0.166 4.166 18 C -0.066 4.066 19 C -0.126 4.126 20 C -0.210 4.210 21 N -0.170 5.170 22 N -0.094 5.094 23 N -0.099 5.099 24 H 0.309 0.691 25 C -0.139 4.139 26 C -0.151 4.151 27 C -0.173 4.173 28 C 0.046 3.954 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.046 0.954 32 H 0.011 0.989 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.054 0.946 36 H 0.083 0.917 37 H 0.252 0.748 38 H 0.130 0.870 39 H 0.146 0.854 40 H 0.124 0.876 41 H 0.103 0.897 42 H 0.233 0.767 43 H 0.107 0.893 44 H 0.097 0.903 45 H 0.093 0.907 46 H 0.091 0.909 47 H 0.059 0.941 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.057 -19.904 9.842 22.205 hybrid contribution 0.459 2.733 -0.991 2.943 sum 0.402 -17.171 8.851 19.322 Atomic orbital electron populations 1.70126 1.06245 1.25290 1.57659 1.25609 0.96399 1.00859 1.02598 0.85199 0.77922 0.79787 0.77264 1.21443 1.22058 1.19597 1.19325 0.91016 0.84158 1.42097 0.90915 1.44740 1.13063 1.00968 1.74276 1.20869 0.85735 0.94140 0.94278 1.22570 0.97630 0.96035 0.99335 1.21811 0.95027 0.95849 0.94483 1.21012 0.94325 0.92348 0.89383 1.45925 1.17103 1.48439 1.24900 1.21182 0.86690 0.80796 0.81596 1.90727 1.19555 1.61609 1.74957 1.21655 0.99224 1.00357 0.95410 1.19828 0.96826 0.97444 0.92526 1.22398 1.02182 0.96634 0.91363 1.23976 1.03199 0.93396 1.00433 1.75084 1.14970 1.21852 1.05066 1.78267 1.19906 0.89269 1.21944 1.45218 1.35557 1.12004 1.17166 0.69058 1.22192 1.01553 0.95924 0.94222 1.22232 1.01719 0.94024 0.97087 1.22885 0.99752 0.96687 0.97997 1.21993 0.96136 0.84322 0.92987 0.92430 0.94431 0.95378 0.98900 0.89382 0.92202 0.94649 0.91684 0.74779 0.87005 0.85388 0.87601 0.89654 0.76733 0.89320 0.90304 0.90746 0.90884 0.94080 0.93601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.31 10.89 21.65 0.24 -56.07 16 2 C -0.06 -3.45 5.39 84.86 0.46 -2.99 16 3 Si 0.97 45.78 29.56 68.60 2.03 47.81 16 4 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 5 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.24 -13.10 10.27 84.03 0.86 -12.23 16 8 H 0.07 3.93 7.84 -2.91 -0.02 3.91 16 9 N -0.61 -29.89 2.98 -666.34 -1.98 -31.87 16 10 C 0.18 8.16 5.04 86.54 0.44 8.59 16 11 C -0.12 -3.71 5.81 31.10 0.18 -3.53 16 12 C -0.07 -1.96 0.65 -51.21 -0.03 -1.99 16 13 C 0.15 4.08 4.27 86.38 0.37 4.45 16 14 N -0.71 -12.97 4.84 -463.06 -2.24 -15.21 16 15 C 0.51 9.40 7.83 87.66 0.69 10.09 16 16 O -0.59 -16.48 15.98 -3.04 -0.05 -16.53 16 17 C -0.13 -1.08 5.68 29.84 0.17 -0.91 16 18 C -0.03 -0.25 5.07 29.84 0.15 -0.10 16 19 C 0.01 0.10 6.56 41.36 0.27 0.37 16 20 C -0.05 -0.71 11.99 83.73 1.00 0.29 16 21 N -0.30 -6.36 12.41 -58.25 -0.72 -7.08 16 22 N -0.11 -2.24 13.38 37.02 0.50 -1.74 16 23 N -0.38 -4.51 6.98 -47.79 -0.33 -4.84 16 24 H 0.46 2.46 8.96 -219.96 -1.97 0.49 16 25 C -0.10 -2.07 5.62 31.17 0.18 -1.89 16 26 C -0.11 -2.63 6.83 31.59 0.22 -2.42 16 27 C -0.13 -4.60 6.37 31.82 0.20 -4.40 16 28 C 0.15 5.81 3.59 46.05 0.17 5.97 16 29 H 0.06 2.23 7.95 -2.38 -0.02 2.21 16 30 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 31 H 0.03 1.51 6.87 -2.39 -0.02 1.49 16 32 H -0.01 -0.36 7.71 -2.38 -0.02 -0.38 16 33 H 0.09 2.26 7.11 -2.39 -0.02 2.25 16 34 H 0.06 1.84 7.62 -2.39 -0.02 1.83 16 35 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.42 5.16 7.86 -92.71 -0.73 4.43 16 38 H 0.11 0.63 8.14 -2.38 -0.02 0.61 16 39 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.11 1.05 8.10 -2.38 -0.02 1.03 16 41 H 0.08 0.90 8.10 -2.38 -0.02 0.88 16 42 H 0.22 1.57 8.06 -2.91 -0.02 1.54 16 43 H 0.09 1.37 7.47 -2.39 -0.02 1.36 16 44 H 0.08 1.43 7.10 -2.39 -0.02 1.41 16 45 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 47 H 0.04 1.65 7.28 -2.39 -0.02 1.64 16 48 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -78.45 382.66 1.03 -77.42 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -1.71 Total: 8.80 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: 5.31 Total: -0.68 kcal Atomic # 7 Polarization: -112.27 SS G_CDS: -4.55 Total: -116.82 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.05 Total: -16.53 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -78.45 1.03 -77.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107552876.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.826 kcal (2) G-P(sol) polarization free energy of solvation -78.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds