Wall clock time and date at job start Tue Mar 31 2020 18:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99683 * 2 1 4 4 H 1.48509 * 109.47067 * 270.00539 * 3 2 1 5 5 H 1.48496 * 109.47375 * 30.00199 * 3 2 1 6 6 H 1.48499 * 109.47150 * 150.00536 * 3 2 1 7 7 C 1.38810 * 120.00334 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99671 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99831 * 179.97438 * 7 2 1 10 10 C 1.46504 * 119.99626 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.32399 * 34.64367 * 10 9 7 12 12 C 1.53600 * 109.84373 * 153.29231 * 10 9 7 13 13 C 1.53967 * 109.30685 * 174.88052 * 12 10 9 14 14 H 1.08999 * 113.67056 * 169.58676 * 13 12 10 15 15 C 1.55427 * 106.41494 * 294.85753 * 13 12 10 16 16 C 1.55167 * 100.35459 * 73.37925 * 15 13 12 17 17 H 1.09006 * 112.48472 * 162.66933 * 16 15 13 18 18 C 1.52981 * 109.32530 * 274.99671 * 10 9 7 19 19 N 1.47791 * 104.25689 * 40.55269 * 16 15 13 20 20 C 1.34772 * 125.85849 * 153.52818 * 19 16 15 21 21 O 1.21274 * 120.00002 * 0.02562 * 20 19 16 22 22 C 1.50703 * 119.99947 * 180.02562 * 20 19 16 23 23 C 1.52999 * 109.47172 * 180.02562 * 22 20 19 24 24 C 1.52997 * 109.47040 * 180.02562 * 23 22 20 25 25 N 1.46506 * 109.47019 * 179.97438 * 24 23 22 26 26 C 1.35309 * 125.86514 * 124.99848 * 25 24 23 27 27 C 1.35349 * 106.17526 * 180.02562 * 26 25 24 28 28 N 1.33777 * 106.49497 * 359.97438 * 27 26 25 29 29 N 1.28630 * 108.88282 * 359.74117 * 28 27 26 30 30 C 1.47087 * 108.28470 * 333.53069 * 19 16 15 31 31 H 0.97001 * 120.00677 * 359.97438 * 1 2 3 32 32 H 0.97000 * 120.00067 * 359.97438 * 9 7 2 33 33 H 1.08998 * 108.48640 * 55.43813 * 12 10 9 34 34 H 1.09002 * 110.18290 * 295.35214 * 12 10 9 35 35 H 1.09002 * 111.23113 * 191.15893 * 15 13 12 36 36 H 1.09006 * 111.23422 * 315.60104 * 15 13 12 37 37 H 1.09009 * 109.53116 * 64.93397 * 18 10 9 38 38 H 1.08997 * 109.53828 * 304.71063 * 18 10 9 39 39 H 1.09004 * 109.47069 * 300.00291 * 22 20 19 40 40 H 1.08999 * 109.47151 * 60.00317 * 22 20 19 41 41 H 1.09004 * 109.47000 * 299.99891 * 23 22 20 42 42 H 1.09001 * 109.47292 * 59.99356 * 23 22 20 43 43 H 1.08994 * 109.47148 * 299.99248 * 24 23 22 44 44 H 1.08999 * 109.47325 * 59.99849 * 24 23 22 45 45 H 1.07998 * 126.91834 * 0.02562 * 26 25 24 46 46 H 1.08001 * 126.75811 * 179.97438 * 27 26 25 47 47 H 1.09004 * 109.97595 * 241.75394 * 30 19 16 48 48 H 1.08996 * 109.97761 * 120.46287 * 30 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4974 2.0466 -1.4002 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2020 -0.0011 10 6 4.1122 -2.4707 -0.0011 11 1 3.5595 -3.2064 -0.5854 12 6 5.4904 -2.2771 -0.6510 13 6 6.2984 -3.5820 -0.5296 14 1 7.2143 -3.5862 -1.1205 15 6 6.5481 -3.8045 0.9883 16 6 5.1298 -4.2391 1.4435 17 1 5.1370 -4.7331 2.4151 18 6 4.2570 -2.9717 1.4371 19 7 4.6568 -5.1281 0.3617 20 6 3.7532 -6.1194 0.4929 21 8 3.2521 -6.3439 1.5741 22 6 3.3656 -6.9488 -0.7042 23 6 2.3314 -7.9959 -0.2859 24 6 1.9384 -8.8383 -1.5010 25 7 0.9485 -9.8414 -1.1003 26 6 -0.2698 -10.0210 -1.6610 27 6 -0.8471 -11.0441 -0.9887 28 7 0.0350 -11.4355 -0.0622 29 7 1.0906 -10.7069 -0.1583 30 6 5.3415 -4.7454 -0.8825 31 1 -0.4851 0.8400 0.0004 32 1 3.8646 -0.3619 -0.0014 33 1 6.0103 -1.4754 -0.1265 34 1 5.3766 -2.0143 -1.7027 35 1 7.2770 -4.5972 1.1564 36 1 6.8538 -2.8797 1.4778 37 1 3.2725 -3.2052 1.8426 38 1 4.7295 -2.2008 2.0458 39 1 2.9382 -6.3026 -1.4710 40 1 4.2491 -7.4487 -1.1013 41 1 2.7584 -8.6421 0.4811 42 1 1.4480 -7.4957 0.1111 43 1 1.5115 -8.1924 -2.2682 44 1 2.8219 -9.3385 -1.8975 45 1 -0.6959 -9.4608 -2.4801 46 1 -1.8270 -11.4623 -1.1655 47 1 4.6123 -4.4162 -1.6228 48 1 5.9102 -5.5908 -1.2698 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108704275.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:38 Heat of formation + Delta-G solvation = 82.847534 kcal Electronic energy + Delta-G solvation = -28949.223290 eV Core-core repulsion = 25041.799419 eV Total energy + Delta-G solvation = -3907.423871 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.38420 -40.93662 -38.58993 -36.01268 -35.00999 -33.02779 -32.52051 -31.42141 -31.18950 -30.79250 -28.51693 -27.76493 -25.71092 -23.78745 -23.47365 -22.81057 -21.75680 -21.15826 -21.03648 -19.53246 -18.87040 -17.95077 -17.58373 -16.99294 -16.69266 -16.16715 -15.62576 -15.14051 -15.00309 -14.80254 -14.49072 -14.26789 -13.84260 -13.61083 -13.46197 -13.04092 -12.79465 -12.73286 -12.62239 -12.41761 -12.31129 -12.07950 -11.92258 -11.83332 -11.78440 -11.31582 -11.24166 -11.12063 -11.02184 -10.93928 -10.62736 -10.30066 -10.27221 -10.13679 -9.75111 -9.72264 -9.61939 -9.55967 -8.97331 -8.51461 -7.31703 -5.80867 -3.16981 1.42955 2.11507 2.43641 2.71154 3.00767 3.32729 3.35016 3.41298 4.06692 4.24084 4.36225 4.41256 4.51162 4.54446 4.59276 4.74870 4.82113 4.85798 4.93336 5.00150 5.05046 5.11436 5.19530 5.24644 5.30563 5.41371 5.46579 5.50601 5.57289 5.63555 5.71573 5.77521 5.79275 5.87528 5.93320 5.97092 6.01348 6.05898 6.14366 6.25022 6.36966 6.40005 6.53360 6.82699 6.93583 7.61521 7.95135 8.24742 8.35316 8.37943 9.16339 9.88736 10.08170 11.37495 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011586 B = 0.002892 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.139183 B = 9678.578804 C =11397.962062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.885 3.115 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.242 4.242 8 H 0.087 0.913 9 N -0.748 5.748 10 C 0.185 3.815 11 H 0.054 0.946 12 C -0.126 4.126 13 C -0.096 4.096 14 H 0.099 0.901 15 C -0.128 4.128 16 C 0.134 3.866 17 H 0.092 0.908 18 C -0.144 4.144 19 N -0.609 5.609 20 C 0.530 3.470 21 O -0.538 6.538 22 C -0.133 4.133 23 C -0.119 4.119 24 C 0.114 3.886 25 N -0.288 5.288 26 C -0.050 4.050 27 C -0.055 4.055 28 N -0.275 5.275 29 N -0.082 5.082 30 C 0.103 3.897 31 H 0.259 0.741 32 H 0.360 0.640 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.109 0.891 44 H 0.101 0.899 45 H 0.191 0.809 46 H 0.189 0.811 47 H 0.076 0.924 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.736 -15.603 -8.008 21.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.372 4.372 8 H 0.105 0.895 9 N -0.390 5.390 10 C 0.075 3.925 11 H 0.072 0.928 12 C -0.165 4.165 13 C -0.116 4.116 14 H 0.118 0.882 15 C -0.166 4.166 16 C 0.031 3.969 17 H 0.110 0.890 18 C -0.185 4.185 19 N -0.343 5.343 20 C 0.319 3.681 21 O -0.415 6.415 22 C -0.173 4.173 23 C -0.157 4.157 24 C -0.007 4.007 25 N -0.082 5.082 26 C -0.201 4.201 27 C -0.212 4.212 28 N -0.141 5.141 29 N -0.062 5.062 30 C -0.021 4.021 31 H 0.070 0.930 32 H 0.193 0.807 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.117 0.883 40 H 0.114 0.886 41 H 0.108 0.892 42 H 0.101 0.899 43 H 0.127 0.873 44 H 0.119 0.881 45 H 0.208 0.792 46 H 0.206 0.794 47 H 0.094 0.906 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.066 -16.368 -6.344 21.301 hybrid contribution -0.266 1.960 -0.986 2.210 sum 11.800 -14.409 -7.329 20.014 Atomic orbital electron populations 1.69699 1.05123 1.25834 1.57449 1.24676 0.95221 0.97194 1.02027 0.86546 0.79194 0.85027 0.77692 1.21128 1.21772 1.20367 1.19031 0.80535 0.94579 1.43045 0.89475 1.42772 1.04003 1.01938 1.90288 1.20257 0.90394 0.88989 0.92820 0.92815 1.22258 0.96833 0.95995 1.01395 1.22584 0.97640 0.94756 0.96579 0.88237 1.23061 0.96026 1.01823 0.95713 1.22294 0.93088 0.90408 0.91101 0.89014 1.22759 1.00064 0.94891 1.00754 1.48581 1.41914 1.32878 1.10918 1.20039 0.78215 0.79645 0.90228 1.90738 1.53088 1.69041 1.28619 1.21521 1.00390 0.97776 0.97660 1.21609 1.00470 0.97010 0.96631 1.22219 0.91060 0.88404 0.98975 1.47522 1.13418 1.24240 1.23009 1.23751 0.87870 1.03704 1.04741 1.23640 1.02171 0.98822 0.96608 1.75129 0.98298 1.20601 1.20111 1.78313 1.19836 1.00381 1.07663 1.22216 0.95450 0.97129 0.87257 0.93043 0.80747 0.91905 0.91361 0.91279 0.89620 0.91386 0.91638 0.88269 0.88608 0.89194 0.89867 0.87253 0.88112 0.79193 0.79411 0.90604 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.16 13.97 55.49 0.78 -28.39 16 2 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 3 Si 0.88 21.75 27.73 -169.99 -4.71 17.04 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.39 6.52 56.52 0.37 -6.03 16 7 C -0.24 -6.71 10.40 -15.06 -0.16 -6.86 16 8 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 9 N -0.75 -16.99 4.92 -53.13 -0.26 -17.25 16 10 C 0.18 3.28 2.40 -67.63 -0.16 3.12 16 11 H 0.05 1.02 5.97 -51.93 -0.31 0.71 16 12 C -0.13 -1.66 5.00 -25.92 -0.13 -1.79 16 13 C -0.10 -0.93 4.33 -87.92 -0.38 -1.31 16 14 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 15 C -0.13 -1.32 6.18 -24.30 -0.15 -1.47 16 16 C 0.13 1.85 3.94 -65.61 -0.26 1.59 16 17 H 0.09 1.34 8.02 -51.93 -0.42 0.92 16 18 C -0.14 -2.48 5.31 -26.28 -0.14 -2.61 16 19 N -0.61 -7.85 2.40 -161.81 -0.39 -8.24 16 20 C 0.53 7.46 7.86 -10.99 -0.09 7.38 16 21 O -0.54 -10.00 16.24 5.56 0.09 -9.91 16 22 C -0.13 -1.20 4.91 -27.88 -0.14 -1.33 16 23 C -0.12 -1.18 4.63 -26.73 -0.12 -1.30 16 24 C 0.11 0.79 6.45 -4.04 -0.03 0.76 16 25 N -0.29 -2.93 3.44 -61.26 -0.21 -3.14 16 26 C -0.05 -0.42 11.57 -17.05 -0.20 -0.62 16 27 C -0.06 -0.55 12.05 -17.73 -0.21 -0.76 16 28 N -0.28 -3.81 12.41 30.24 0.38 -3.44 16 29 N -0.08 -1.12 12.92 60.35 0.78 -0.34 16 30 C 0.10 1.00 5.24 -2.82 -0.01 0.99 16 31 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 32 H 0.36 8.02 5.69 -40.82 -0.23 7.79 16 33 H 0.06 0.82 7.97 -51.93 -0.41 0.41 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 0.86 7.73 -51.93 -0.40 0.46 16 37 H 0.07 1.43 8.14 -51.92 -0.42 1.01 16 38 H 0.06 1.11 7.99 -51.93 -0.42 0.69 16 39 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.09 1.07 8.08 -51.93 -0.42 0.65 16 42 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 43 H 0.11 0.46 8.07 -51.93 -0.42 0.04 16 44 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.19 0.84 8.06 -52.49 -0.42 0.41 16 46 H 0.19 1.22 8.06 -52.49 -0.42 0.80 16 47 H 0.08 0.77 6.83 -51.93 -0.35 0.42 16 48 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 382.62 15.07 5.77 5.77 Total: -1.00 -37.77 382.62 -7.68 -45.45 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -7.62 Total: 6.64 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -2.27 Total: -4.19 kcal Atomic # 7 Polarization: -61.86 SS G_CDS: 1.07 Total: -60.79 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.71 Total: 17.04 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.77 -7.68 -45.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108704275.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.300 kcal (2) G-P(sol) polarization free energy of solvation -37.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds