Wall clock time and date at job start Tue Mar 31 2020 18:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99683 * 2 1 4 4 H 1.48509 * 109.47067 * 270.00539 * 3 2 1 5 5 H 1.48496 * 109.47375 * 30.00199 * 3 2 1 6 6 H 1.48499 * 109.47150 * 150.00536 * 3 2 1 7 7 C 1.38810 * 120.00334 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99671 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99831 * 179.97438 * 7 2 1 10 10 C 1.46504 * 119.99626 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.32399 * 34.64367 * 10 9 7 12 12 C 1.53600 * 109.84373 * 153.29231 * 10 9 7 13 13 C 1.53967 * 109.30685 * 174.88052 * 12 10 9 14 14 H 1.08999 * 113.67056 * 169.58676 * 13 12 10 15 15 C 1.55427 * 106.41494 * 294.85753 * 13 12 10 16 16 C 1.55167 * 100.35459 * 73.37925 * 15 13 12 17 17 H 1.09006 * 112.48472 * 162.66933 * 16 15 13 18 18 C 1.52981 * 109.32530 * 274.99671 * 10 9 7 19 19 N 1.47791 * 104.25689 * 40.55269 * 16 15 13 20 20 C 1.34772 * 125.85849 * 153.52818 * 19 16 15 21 21 O 1.21274 * 120.00002 * 0.02562 * 20 19 16 22 22 C 1.50703 * 119.99947 * 180.02562 * 20 19 16 23 23 C 1.52999 * 109.47172 * 180.02562 * 22 20 19 24 24 C 1.52997 * 109.47040 * 180.02562 * 23 22 20 25 25 N 1.46506 * 109.47019 * 179.97438 * 24 23 22 26 26 C 1.35309 * 125.86514 * 124.99848 * 25 24 23 27 27 C 1.35349 * 106.17526 * 180.02562 * 26 25 24 28 28 N 1.33777 * 106.49497 * 359.97438 * 27 26 25 29 29 N 1.28630 * 108.88282 * 359.74117 * 28 27 26 30 30 C 1.47087 * 108.28470 * 333.53069 * 19 16 15 31 31 H 0.97001 * 120.00677 * 359.97438 * 1 2 3 32 32 H 0.97000 * 120.00067 * 359.97438 * 9 7 2 33 33 H 1.08998 * 108.48640 * 55.43813 * 12 10 9 34 34 H 1.09002 * 110.18290 * 295.35214 * 12 10 9 35 35 H 1.09002 * 111.23113 * 191.15893 * 15 13 12 36 36 H 1.09006 * 111.23422 * 315.60104 * 15 13 12 37 37 H 1.09009 * 109.53116 * 64.93397 * 18 10 9 38 38 H 1.08997 * 109.53828 * 304.71063 * 18 10 9 39 39 H 1.09004 * 109.47069 * 300.00291 * 22 20 19 40 40 H 1.08999 * 109.47151 * 60.00317 * 22 20 19 41 41 H 1.09004 * 109.47000 * 299.99891 * 23 22 20 42 42 H 1.09001 * 109.47292 * 59.99356 * 23 22 20 43 43 H 1.08994 * 109.47148 * 299.99248 * 24 23 22 44 44 H 1.08999 * 109.47325 * 59.99849 * 24 23 22 45 45 H 1.07998 * 126.91834 * 0.02562 * 26 25 24 46 46 H 1.08001 * 126.75811 * 179.97438 * 27 26 25 47 47 H 1.09004 * 109.97595 * 241.75394 * 30 19 16 48 48 H 1.08996 * 109.97761 * 120.46287 * 30 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4974 2.0466 -1.4002 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2020 -0.0011 10 6 4.1122 -2.4707 -0.0011 11 1 3.5595 -3.2064 -0.5854 12 6 5.4904 -2.2771 -0.6510 13 6 6.2984 -3.5820 -0.5296 14 1 7.2143 -3.5862 -1.1205 15 6 6.5481 -3.8045 0.9883 16 6 5.1298 -4.2391 1.4435 17 1 5.1370 -4.7331 2.4151 18 6 4.2570 -2.9717 1.4371 19 7 4.6568 -5.1281 0.3617 20 6 3.7532 -6.1194 0.4929 21 8 3.2521 -6.3439 1.5741 22 6 3.3656 -6.9488 -0.7042 23 6 2.3314 -7.9959 -0.2859 24 6 1.9384 -8.8383 -1.5010 25 7 0.9485 -9.8414 -1.1003 26 6 -0.2698 -10.0210 -1.6610 27 6 -0.8471 -11.0441 -0.9887 28 7 0.0350 -11.4355 -0.0622 29 7 1.0906 -10.7069 -0.1583 30 6 5.3415 -4.7454 -0.8825 31 1 -0.4851 0.8400 0.0004 32 1 3.8646 -0.3619 -0.0014 33 1 6.0103 -1.4754 -0.1265 34 1 5.3766 -2.0143 -1.7027 35 1 7.2770 -4.5972 1.1564 36 1 6.8538 -2.8797 1.4778 37 1 3.2725 -3.2052 1.8426 38 1 4.7295 -2.2008 2.0458 39 1 2.9382 -6.3026 -1.4710 40 1 4.2491 -7.4487 -1.1013 41 1 2.7584 -8.6421 0.4811 42 1 1.4480 -7.4957 0.1111 43 1 1.5115 -8.1924 -2.2682 44 1 2.8219 -9.3385 -1.8975 45 1 -0.6959 -9.4608 -2.4801 46 1 -1.8270 -11.4623 -1.1655 47 1 4.6123 -4.4162 -1.6228 48 1 5.9102 -5.5908 -1.2698 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108704275.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:37 Heat of formation + Delta-G solvation = 54.999891 kcal Electronic energy + Delta-G solvation = -28950.430855 eV Core-core repulsion = 25041.799419 eV Total energy + Delta-G solvation = -3908.631436 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.16116 -41.99313 -39.71882 -36.83400 -36.65777 -34.31454 -33.65957 -32.97566 -31.99358 -31.91735 -30.00556 -28.54300 -26.69229 -25.36749 -24.68009 -23.57433 -22.70137 -22.41851 -21.94967 -20.72632 -19.97864 -19.47538 -18.73355 -17.96675 -17.58707 -17.15453 -16.68832 -16.29508 -16.16784 -15.87418 -15.67768 -15.27794 -15.16085 -14.83474 -14.61050 -14.41606 -14.02576 -13.80595 -13.65725 -13.51045 -13.38721 -13.15336 -12.97690 -12.91868 -12.78593 -12.76589 -12.59201 -12.31258 -12.08512 -12.05176 -11.87179 -11.79578 -11.60111 -11.34886 -11.10739 -11.01182 -10.91838 -10.82896 -10.32445 -9.62686 -9.30885 -8.05468 -5.39244 0.68523 1.34695 1.39749 1.47016 1.48504 1.63787 1.64362 2.06791 2.45845 3.24886 3.34168 3.47947 3.54838 3.57442 3.70260 3.74769 3.81265 4.04381 4.14864 4.17578 4.20535 4.28568 4.31170 4.34947 4.35558 4.38662 4.41221 4.56104 4.58078 4.67445 4.74244 4.76964 4.85511 4.92988 4.98889 5.06306 5.11614 5.13922 5.24999 5.29200 5.33488 5.40176 5.47390 5.53094 5.70391 5.73210 6.18846 6.60999 7.05760 7.18628 7.53764 7.82268 8.01887 9.16674 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011586 B = 0.002892 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.139183 B = 9678.578804 C =11397.962062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.988 5.988 2 C -0.068 4.068 3 Si 0.962 3.038 4 H -0.271 1.271 5 H -0.300 1.300 6 H -0.250 1.250 7 C -0.227 4.227 8 H 0.041 0.959 9 N -0.751 5.751 10 C 0.180 3.820 11 H 0.037 0.963 12 C -0.119 4.119 13 C -0.079 4.079 14 H 0.148 0.852 15 C -0.115 4.115 16 C 0.129 3.871 17 H 0.073 0.927 18 C -0.136 4.136 19 N -0.610 5.610 20 C 0.513 3.487 21 O -0.602 6.602 22 C -0.119 4.119 23 C -0.111 4.111 24 C 0.114 3.886 25 N -0.289 5.289 26 C -0.036 4.036 27 C -0.071 4.071 28 N -0.320 5.320 29 N -0.129 5.129 30 C 0.093 3.907 31 H 0.257 0.743 32 H 0.366 0.634 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.006 0.994 38 H 0.066 0.934 39 H 0.119 0.881 40 H 0.141 0.859 41 H 0.060 0.940 42 H 0.043 0.957 43 H 0.147 0.853 44 H 0.130 0.870 45 H 0.236 0.764 46 H 0.216 0.784 47 H 0.073 0.927 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.739 -14.990 -11.496 24.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.638 5.638 2 C -0.259 4.259 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.228 1.228 6 H -0.175 1.175 7 C -0.358 4.358 8 H 0.059 0.941 9 N -0.394 5.394 10 C 0.072 3.928 11 H 0.055 0.945 12 C -0.157 4.157 13 C -0.098 4.098 14 H 0.166 0.834 15 C -0.153 4.153 16 C 0.024 3.976 17 H 0.091 0.909 18 C -0.177 4.177 19 N -0.343 5.343 20 C 0.303 3.697 21 O -0.484 6.484 22 C -0.159 4.159 23 C -0.150 4.150 24 C -0.005 4.005 25 N -0.083 5.083 26 C -0.187 4.187 27 C -0.229 4.229 28 N -0.185 5.185 29 N -0.108 5.108 30 C -0.028 4.028 31 H 0.066 0.934 32 H 0.200 0.800 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.025 0.975 38 H 0.085 0.915 39 H 0.138 0.862 40 H 0.159 0.841 41 H 0.079 0.921 42 H 0.062 0.938 43 H 0.165 0.835 44 H 0.148 0.852 45 H 0.252 0.748 46 H 0.233 0.767 47 H 0.091 0.909 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 16.174 -15.780 -9.854 24.652 hybrid contribution -1.622 1.719 0.137 2.367 sum 14.552 -14.061 -9.717 22.448 Atomic orbital electron populations 1.69909 1.07392 1.26732 1.59785 1.25589 0.96159 1.01573 1.02611 0.85310 0.78468 0.78962 0.78373 1.19689 1.22755 1.17483 1.18898 0.82927 0.92782 1.41242 0.94084 1.42781 1.02198 1.04173 1.90216 1.20515 0.92950 0.86445 0.92905 0.94485 1.22189 0.93626 0.98631 1.01248 1.22686 0.98546 0.92086 0.96496 0.83442 1.23037 0.93230 1.02916 0.96117 1.22231 0.95188 0.88686 0.91457 0.90928 1.22613 0.97700 0.97153 1.00252 1.48767 1.41546 1.31969 1.12032 1.21099 0.77543 0.80073 0.90958 1.90706 1.55282 1.70963 1.31408 1.21550 1.01798 0.97094 0.95463 1.21439 0.99054 0.96994 0.97553 1.22503 0.92130 0.88080 0.97794 1.47830 1.14477 1.23810 1.22220 1.24488 0.86723 1.02831 1.04686 1.24276 1.02997 0.99518 0.96060 1.75049 0.99419 1.21981 1.22012 1.78245 1.20602 1.02142 1.09856 1.22551 0.95684 0.99099 0.85485 0.93384 0.80037 0.91122 0.90414 0.88598 0.88967 0.97475 0.91517 0.86249 0.84146 0.92084 0.93818 0.83521 0.85233 0.74803 0.76740 0.90858 0.87340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.33 13.97 21.65 0.30 -64.03 16 2 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 3 Si 0.96 45.12 27.73 68.60 1.90 47.03 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 6 H -0.25 -10.48 6.52 99.48 0.65 -9.83 16 7 C -0.23 -13.12 10.40 84.03 0.87 -12.24 16 8 H 0.04 2.69 8.06 -2.91 -0.02 2.66 16 9 N -0.75 -34.13 4.92 -322.00 -1.58 -35.71 16 10 C 0.18 6.32 2.40 45.19 0.11 6.43 16 11 H 0.04 1.42 5.97 -2.39 -0.01 1.41 16 12 C -0.12 -2.67 5.00 31.12 0.16 -2.51 16 13 C -0.08 -1.10 4.33 -9.05 -0.04 -1.14 16 14 H 0.15 0.90 8.14 -2.39 -0.02 0.88 16 15 C -0.12 -1.91 6.18 32.17 0.20 -1.71 16 16 C 0.13 3.52 3.94 45.79 0.18 3.70 16 17 H 0.07 2.24 8.02 -2.38 -0.02 2.22 16 18 C -0.14 -4.90 5.31 30.89 0.16 -4.73 16 19 N -0.61 -15.14 2.40 -784.23 -1.88 -17.01 16 20 C 0.51 14.78 7.86 87.66 0.69 15.47 16 21 O -0.60 -24.50 16.24 -3.01 -0.05 -24.55 16 22 C -0.12 -1.95 4.91 29.85 0.15 -1.81 16 23 C -0.11 -2.26 4.63 30.59 0.14 -2.12 16 24 C 0.11 1.33 6.45 86.38 0.56 1.89 16 25 N -0.29 -5.68 3.44 -347.74 -1.20 -6.87 16 26 C -0.04 -0.54 11.57 83.49 0.97 0.43 16 27 C -0.07 -1.38 12.05 83.73 1.01 -0.37 16 28 N -0.32 -9.22 12.41 -58.25 -0.72 -9.94 16 29 N -0.13 -3.67 12.92 37.02 0.48 -3.19 16 30 C 0.09 1.41 5.24 86.85 0.46 1.87 16 31 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 32 H 0.37 15.65 5.69 -92.71 -0.53 15.12 16 33 H 0.07 1.53 7.97 -2.39 -0.02 1.51 16 34 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.09 1.47 7.73 -2.38 -0.02 1.45 16 37 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 38 H 0.07 2.31 7.99 -2.39 -0.02 2.29 16 39 H 0.12 1.52 8.14 -2.38 -0.02 1.50 16 40 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.06 1.58 8.08 -2.38 -0.02 1.56 16 42 H 0.04 1.21 8.10 -2.39 -0.02 1.19 16 43 H 0.15 0.64 8.07 -2.39 -0.02 0.62 16 44 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.24 1.15 8.06 -2.91 -0.02 1.13 16 46 H 0.22 2.57 8.06 -2.91 -0.02 2.55 16 47 H 0.07 1.21 6.83 -2.38 -0.02 1.19 16 48 H 0.11 0.79 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -95.26 382.62 3.70 -91.56 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: 0.37 Total: 23.16 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: 6.07 Total: -0.44 kcal Atomic # 7 Polarization: -132.16 SS G_CDS: -4.60 Total: -136.76 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.05 Total: -24.55 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.90 Total: 47.03 kcal Total: -95.26 3.70 -91.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108704275.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.562 kcal (2) G-P(sol) polarization free energy of solvation -95.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds