Wall clock time and date at job start Tue Mar 31 2020 18:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00059 * 2 1 4 4 H 1.48503 * 109.47184 * 273.70590 * 3 2 1 5 5 H 1.48497 * 109.47215 * 33.70599 * 3 2 1 6 6 H 1.48503 * 109.47084 * 153.70977 * 3 2 1 7 7 C 1.38812 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99838 * 354.52452 * 7 2 1 9 9 N 1.36941 * 119.99887 * 174.53163 * 7 2 1 10 10 C 1.46502 * 119.99929 * 162.71039 * 9 7 2 11 11 H 1.09003 * 109.17482 * 17.60921 * 10 9 7 12 12 C 1.53028 * 109.32329 * 258.05599 * 10 9 7 13 13 C 1.53972 * 108.82633 * 295.14003 * 12 10 9 14 14 H 1.09000 * 112.99519 * 169.00282 * 13 12 10 15 15 C 1.55426 * 106.41632 * 293.82390 * 13 12 10 16 16 C 1.55166 * 100.35434 * 73.37534 * 15 13 12 17 17 H 1.08999 * 113.04745 * 162.99259 * 16 15 13 18 18 C 1.52984 * 109.32587 * 137.16753 * 10 9 7 19 19 N 1.47793 * 104.25584 * 40.55463 * 16 15 13 20 20 C 1.34772 * 125.85632 * 153.50543 * 19 16 15 21 21 O 1.21287 * 120.00192 * 8.27854 * 20 19 16 22 22 C 1.50703 * 120.00096 * 188.27612 * 20 19 16 23 23 C 1.52995 * 109.47147 * 198.14196 * 22 20 19 24 24 C 1.53003 * 109.47070 * 185.58871 * 23 22 20 25 25 N 1.46496 * 109.47237 * 180.02562 * 24 23 22 26 26 C 1.35318 * 125.87096 * 125.00082 * 25 24 23 27 27 C 1.35344 * 106.17605 * 179.97438 * 26 25 24 28 28 N 1.33773 * 106.50017 * 359.97438 * 27 26 25 29 29 N 1.28641 * 108.88295 * 359.73098 * 28 27 26 30 30 C 1.47080 * 108.28386 * 333.77234 * 19 16 15 31 31 H 0.97005 * 119.99647 * 0.02562 * 1 2 3 32 32 H 0.96998 * 119.99933 * 342.70510 * 9 7 2 33 33 H 1.08997 * 109.58374 * 54.94547 * 12 10 9 34 34 H 1.08998 * 109.57722 * 175.34379 * 12 10 9 35 35 H 1.08998 * 111.23402 * 315.59710 * 15 13 12 36 36 H 1.09003 * 111.23623 * 191.15642 * 15 13 12 37 37 H 1.09000 * 109.53045 * 305.28873 * 18 10 9 38 38 H 1.09002 * 109.53274 * 185.06589 * 18 10 9 39 39 H 1.09000 * 109.46908 * 78.13884 * 22 20 19 40 40 H 1.09000 * 109.46984 * 318.14377 * 22 20 19 41 41 H 1.08999 * 109.46957 * 305.58412 * 23 22 20 42 42 H 1.08995 * 109.47258 * 65.58665 * 23 22 20 43 43 H 1.09005 * 109.47154 * 299.99905 * 24 23 22 44 44 H 1.09000 * 109.47568 * 59.99445 * 24 23 22 45 45 H 1.08001 * 126.90916 * 0.02562 * 26 25 24 46 46 H 1.07998 * 126.75385 * 179.97438 * 27 26 25 47 47 H 1.09002 * 109.97545 * 120.22399 * 30 19 16 48 48 H 1.08994 * 109.97316 * 241.50725 * 30 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4194 2.0917 -1.3972 5 1 1.4891 2.6288 0.7769 6 1 3.5848 1.4188 0.6201 7 6 2.0102 -1.2022 -0.0005 8 1 1.4739 -2.1353 0.0883 9 7 3.3750 -1.2048 -0.1136 10 6 4.1385 -2.3985 0.2585 11 1 3.4667 -3.2561 0.2952 12 6 4.7668 -2.1881 1.6379 13 6 5.7937 -1.0444 1.5468 14 1 6.1440 -0.7080 2.5226 15 6 6.9388 -1.5543 0.6279 16 6 6.2362 -1.4914 -0.7542 17 1 6.9349 -1.5255 -1.5901 18 6 5.2253 -2.6510 -0.7881 19 7 5.4656 -0.2308 -0.7137 20 6 5.1093 0.5113 -1.7807 21 8 5.2902 0.0867 -2.9024 22 6 4.4861 1.8687 -1.5803 23 6 3.7762 2.2987 -2.8656 24 6 3.2636 3.7319 -2.7101 25 7 2.5834 4.1434 -3.9405 26 6 1.3182 4.6156 -4.0271 27 6 1.0998 4.8704 -5.3383 28 7 2.2272 4.5465 -5.9812 29 7 3.0888 4.1247 -5.1241 30 6 5.1599 0.0781 0.6915 31 1 -0.4850 0.8401 -0.0004 32 1 3.8361 -0.4164 -0.4400 33 1 3.9907 -1.9257 2.3568 34 1 5.2668 -3.1033 1.9550 35 1 7.2224 -2.5760 0.8804 36 1 7.8003 -0.8875 0.6636 37 1 4.7717 -2.7102 -1.7775 38 1 5.7368 -3.5871 -0.5639 39 1 5.2632 2.5925 -1.3348 40 1 3.7641 1.8202 -0.7652 41 1 4.4757 2.2516 -3.7002 42 1 2.9362 1.6312 -3.0574 43 1 2.5641 3.7791 -1.8754 44 1 4.1037 4.3994 -2.5182 45 1 0.6229 4.7608 -3.2135 46 1 0.1935 5.2588 -5.7789 47 1 5.5890 1.0428 0.9625 48 1 4.0807 0.0945 0.8427 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108704276.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:41 Heat of formation + Delta-G solvation = 216.151457 kcal Electronic energy + Delta-G solvation = -31179.224695 eV Core-core repulsion = 27277.581316 eV Total energy + Delta-G solvation = -3901.643379 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.15125 -41.66871 -38.54276 -35.96901 -34.32232 -33.55172 -32.58799 -31.45139 -31.08564 -30.94795 -28.43379 -27.55888 -25.62503 -23.62910 -23.36596 -22.59918 -21.71000 -21.23787 -21.07836 -19.95869 -18.94457 -17.99576 -17.81882 -17.34185 -16.39101 -16.08561 -15.30147 -15.08577 -14.81782 -14.74950 -14.46135 -14.05752 -13.75526 -13.55146 -13.35088 -12.91612 -12.88211 -12.70529 -12.31995 -12.22353 -12.10721 -12.08731 -11.82718 -11.70153 -11.54933 -11.39275 -11.11619 -10.99262 -10.84073 -10.63421 -10.30844 -10.08603 -9.98036 -9.72404 -9.57568 -9.47774 -9.32380 -9.16358 -8.75327 -8.26118 -7.12288 -5.91651 -3.29125 1.67357 2.35761 2.65656 2.77695 2.86173 2.93219 3.14058 3.15540 4.30593 4.35893 4.48479 4.60915 4.67773 4.73802 4.84215 4.90455 4.99988 5.10822 5.14877 5.25329 5.28047 5.28689 5.33107 5.40755 5.45311 5.46800 5.56728 5.58821 5.70059 5.76725 5.84529 5.88446 6.00867 6.04143 6.10630 6.19328 6.22392 6.28290 6.35946 6.38416 6.53324 6.58947 6.62182 6.69584 6.90063 7.71171 7.97642 8.27606 8.34792 8.58184 9.09659 9.77872 10.03944 11.24589 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015471 B = 0.004499 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.387186 B = 6222.053854 C = 7198.475649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.809 3.191 4 H -0.244 1.244 5 H -0.293 1.293 6 H -0.236 1.236 7 C -0.250 4.250 8 H 0.084 0.916 9 N -0.752 5.752 10 C 0.174 3.826 11 H 0.065 0.935 12 C -0.134 4.134 13 C -0.093 4.093 14 H 0.093 0.907 15 C -0.128 4.128 16 C 0.135 3.865 17 H 0.092 0.908 18 C -0.142 4.142 19 N -0.604 5.604 20 C 0.536 3.464 21 O -0.534 6.534 22 C -0.175 4.175 23 C -0.110 4.110 24 C 0.111 3.889 25 N -0.284 5.284 26 C -0.048 4.048 27 C -0.056 4.056 28 N -0.277 5.277 29 N -0.083 5.083 30 C 0.042 3.958 31 H 0.259 0.741 32 H 0.376 0.624 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.109 0.891 44 H 0.099 0.901 45 H 0.190 0.810 46 H 0.189 0.811 47 H 0.048 0.952 48 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.468 5.152 3.316 12.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.188 4.188 3 Si 0.645 3.355 4 H -0.172 1.172 5 H -0.221 1.221 6 H -0.166 1.166 7 C -0.380 4.380 8 H 0.102 0.898 9 N -0.409 5.409 10 C 0.064 3.936 11 H 0.083 0.917 12 C -0.174 4.174 13 C -0.112 4.112 14 H 0.111 0.889 15 C -0.166 4.166 16 C 0.032 3.968 17 H 0.110 0.890 18 C -0.181 4.181 19 N -0.341 5.341 20 C 0.325 3.675 21 O -0.410 6.410 22 C -0.214 4.214 23 C -0.149 4.149 24 C -0.010 4.010 25 N -0.078 5.078 26 C -0.199 4.199 27 C -0.214 4.214 28 N -0.143 5.143 29 N -0.063 5.063 30 C -0.080 4.080 31 H 0.070 0.930 32 H 0.225 0.775 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.113 0.887 42 H 0.105 0.895 43 H 0.127 0.873 44 H 0.118 0.882 45 H 0.207 0.793 46 H 0.206 0.794 47 H 0.067 0.933 48 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 11.534 4.621 1.824 12.558 hybrid contribution -0.600 1.359 0.925 1.750 sum 10.934 5.980 2.749 12.762 Atomic orbital electron populations 1.69683 1.05021 1.25544 1.57100 1.24866 0.95138 0.96769 1.01980 0.88680 0.79202 0.87852 0.79789 1.17240 1.22100 1.16615 1.19308 0.81846 0.94522 1.42365 0.89845 1.44644 1.04505 1.14567 1.77173 1.20226 0.91475 0.91529 0.90336 0.91672 1.22400 0.97952 0.96513 1.00497 1.22528 0.95268 0.95779 0.97620 0.88914 1.23061 0.97187 1.01856 0.94533 1.22246 0.92886 0.83919 0.97711 0.88987 1.22495 0.97486 0.96688 1.01473 1.48745 1.54267 1.24222 1.06843 1.19926 0.78060 0.85941 0.83579 1.90691 1.54914 1.72425 1.22982 1.22851 1.02332 0.95461 1.00803 1.21550 1.01956 0.93410 0.97938 1.22492 0.98695 0.98008 0.81794 1.47495 1.10611 1.40879 1.08770 1.23770 0.88876 1.06160 1.01074 1.23586 0.99708 1.07168 0.90898 1.75095 1.00266 1.13986 1.24989 1.78291 1.22072 1.19049 0.86879 1.24052 1.07533 0.96928 0.79445 0.93047 0.77477 0.91068 0.92429 0.89706 0.91440 0.91246 0.91349 0.88131 0.88401 0.88725 0.89477 0.87251 0.88242 0.79340 0.79418 0.93342 0.82858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.37 13.97 55.49 0.78 -26.59 16 2 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 3 Si 0.81 16.83 21.86 -169.99 -3.72 13.11 16 4 H -0.24 -4.54 1.72 56.52 0.10 -4.44 16 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.24 -4.34 2.92 56.52 0.17 -4.18 16 7 C -0.25 -6.64 10.38 -15.06 -0.16 -6.79 16 8 H 0.08 2.44 7.95 -52.49 -0.42 2.02 16 9 N -0.75 -16.50 2.95 -53.42 -0.16 -16.66 16 10 C 0.17 3.16 3.14 -67.92 -0.21 2.95 16 11 H 0.07 1.25 7.86 -51.93 -0.41 0.84 16 12 C -0.13 -1.99 5.38 -26.21 -0.14 -2.13 16 13 C -0.09 -1.24 4.32 -87.93 -0.38 -1.62 16 14 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 15 C -0.13 -1.51 6.18 -24.30 -0.15 -1.66 16 16 C 0.14 2.04 3.96 -65.62 -0.26 1.78 16 17 H 0.09 1.37 8.09 -51.93 -0.42 0.95 16 18 C -0.14 -2.28 5.49 -26.28 -0.14 -2.43 16 19 N -0.60 -10.37 1.79 -161.88 -0.29 -10.66 16 20 C 0.54 10.08 6.50 -10.99 -0.07 10.01 16 21 O -0.53 -11.58 16.22 5.55 0.09 -11.49 16 22 C -0.18 -2.82 4.22 -27.88 -0.12 -2.94 16 23 C -0.11 -1.81 3.91 -26.73 -0.10 -1.91 16 24 C 0.11 1.48 6.18 -4.04 -0.02 1.46 16 25 N -0.28 -4.29 3.44 -61.26 -0.21 -4.50 16 26 C -0.05 -0.62 11.57 -17.05 -0.20 -0.82 16 27 C -0.06 -0.76 12.05 -17.74 -0.21 -0.97 16 28 N -0.28 -4.72 12.41 30.23 0.38 -4.34 16 29 N -0.08 -1.44 12.93 60.35 0.78 -0.66 16 30 C 0.04 0.67 3.59 -2.83 -0.01 0.66 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.38 7.75 0.71 -68.48 -0.05 7.70 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.06 0.71 7.97 -51.93 -0.41 0.30 16 35 H 0.08 0.84 7.75 -51.93 -0.40 0.44 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.07 0.89 8.00 -51.93 -0.42 0.47 16 39 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.10 1.68 0.28 -51.93 -0.01 1.67 16 41 H 0.09 1.63 7.68 -51.93 -0.40 1.23 16 42 H 0.09 1.70 7.40 -51.93 -0.38 1.32 16 43 H 0.11 1.36 5.99 -51.93 -0.31 1.05 16 44 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.19 1.81 8.06 -52.49 -0.42 1.38 16 46 H 0.19 1.79 8.06 -52.49 -0.42 1.37 16 47 H 0.05 0.69 8.01 -51.93 -0.42 0.27 16 48 H 0.16 2.95 2.26 -56.66 -0.13 2.82 16 LS Contribution 342.93 15.07 5.17 5.17 Total: -1.00 -34.07 342.93 -6.70 -40.78 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: -7.24 Total: 20.13 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -2.28 Total: -4.29 kcal Atomic # 7 Polarization: -64.68 SS G_CDS: 1.27 Total: -63.41 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.09 Total: -11.49 kcal Atomic # 14 Polarization: 16.83 SS G_CDS: -3.72 Total: 13.11 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.07 -6.70 -40.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108704276.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 256.929 kcal (2) G-P(sol) polarization free energy of solvation -34.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 222.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 216.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds