Wall clock time and date at job start Tue Mar 31 2020 18:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00059 * 2 1 4 4 H 1.48503 * 109.47184 * 273.70590 * 3 2 1 5 5 H 1.48497 * 109.47215 * 33.70599 * 3 2 1 6 6 H 1.48503 * 109.47084 * 153.70977 * 3 2 1 7 7 C 1.38812 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99838 * 354.52452 * 7 2 1 9 9 N 1.36941 * 119.99887 * 174.53163 * 7 2 1 10 10 C 1.46502 * 119.99929 * 162.71039 * 9 7 2 11 11 H 1.09003 * 109.17482 * 17.60921 * 10 9 7 12 12 C 1.53028 * 109.32329 * 258.05599 * 10 9 7 13 13 C 1.53972 * 108.82633 * 295.14003 * 12 10 9 14 14 H 1.09000 * 112.99519 * 169.00282 * 13 12 10 15 15 C 1.55426 * 106.41632 * 293.82390 * 13 12 10 16 16 C 1.55166 * 100.35434 * 73.37534 * 15 13 12 17 17 H 1.08999 * 113.04745 * 162.99259 * 16 15 13 18 18 C 1.52984 * 109.32587 * 137.16753 * 10 9 7 19 19 N 1.47793 * 104.25584 * 40.55463 * 16 15 13 20 20 C 1.34772 * 125.85632 * 153.50543 * 19 16 15 21 21 O 1.21287 * 120.00192 * 8.27854 * 20 19 16 22 22 C 1.50703 * 120.00096 * 188.27612 * 20 19 16 23 23 C 1.52995 * 109.47147 * 198.14196 * 22 20 19 24 24 C 1.53003 * 109.47070 * 185.58871 * 23 22 20 25 25 N 1.46496 * 109.47237 * 180.02562 * 24 23 22 26 26 C 1.35318 * 125.87096 * 125.00082 * 25 24 23 27 27 C 1.35344 * 106.17605 * 179.97438 * 26 25 24 28 28 N 1.33773 * 106.50017 * 359.97438 * 27 26 25 29 29 N 1.28641 * 108.88295 * 359.73098 * 28 27 26 30 30 C 1.47080 * 108.28386 * 333.77234 * 19 16 15 31 31 H 0.97005 * 119.99647 * 0.02562 * 1 2 3 32 32 H 0.96998 * 119.99933 * 342.70510 * 9 7 2 33 33 H 1.08997 * 109.58374 * 54.94547 * 12 10 9 34 34 H 1.08998 * 109.57722 * 175.34379 * 12 10 9 35 35 H 1.08998 * 111.23402 * 315.59710 * 15 13 12 36 36 H 1.09003 * 111.23623 * 191.15642 * 15 13 12 37 37 H 1.09000 * 109.53045 * 305.28873 * 18 10 9 38 38 H 1.09002 * 109.53274 * 185.06589 * 18 10 9 39 39 H 1.09000 * 109.46908 * 78.13884 * 22 20 19 40 40 H 1.09000 * 109.46984 * 318.14377 * 22 20 19 41 41 H 1.08999 * 109.46957 * 305.58412 * 23 22 20 42 42 H 1.08995 * 109.47258 * 65.58665 * 23 22 20 43 43 H 1.09005 * 109.47154 * 299.99905 * 24 23 22 44 44 H 1.09000 * 109.47568 * 59.99445 * 24 23 22 45 45 H 1.08001 * 126.90916 * 0.02562 * 26 25 24 46 46 H 1.07998 * 126.75385 * 179.97438 * 27 26 25 47 47 H 1.09002 * 109.97545 * 120.22399 * 30 19 16 48 48 H 1.08994 * 109.97316 * 241.50725 * 30 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4194 2.0917 -1.3972 5 1 1.4891 2.6288 0.7769 6 1 3.5848 1.4188 0.6201 7 6 2.0102 -1.2022 -0.0005 8 1 1.4739 -2.1353 0.0883 9 7 3.3750 -1.2048 -0.1136 10 6 4.1385 -2.3985 0.2585 11 1 3.4667 -3.2561 0.2952 12 6 4.7668 -2.1881 1.6379 13 6 5.7937 -1.0444 1.5468 14 1 6.1440 -0.7080 2.5226 15 6 6.9388 -1.5543 0.6279 16 6 6.2362 -1.4914 -0.7542 17 1 6.9349 -1.5255 -1.5901 18 6 5.2253 -2.6510 -0.7881 19 7 5.4656 -0.2308 -0.7137 20 6 5.1093 0.5113 -1.7807 21 8 5.2902 0.0867 -2.9024 22 6 4.4861 1.8687 -1.5803 23 6 3.7762 2.2987 -2.8656 24 6 3.2636 3.7319 -2.7101 25 7 2.5834 4.1434 -3.9405 26 6 1.3182 4.6156 -4.0271 27 6 1.0998 4.8704 -5.3383 28 7 2.2272 4.5465 -5.9812 29 7 3.0888 4.1247 -5.1241 30 6 5.1599 0.0781 0.6915 31 1 -0.4850 0.8401 -0.0004 32 1 3.8361 -0.4164 -0.4400 33 1 3.9907 -1.9257 2.3568 34 1 5.2668 -3.1033 1.9550 35 1 7.2224 -2.5760 0.8804 36 1 7.8003 -0.8875 0.6636 37 1 4.7717 -2.7102 -1.7775 38 1 5.7368 -3.5871 -0.5639 39 1 5.2632 2.5925 -1.3348 40 1 3.7641 1.8202 -0.7652 41 1 4.4757 2.2516 -3.7002 42 1 2.9362 1.6312 -3.0574 43 1 2.5641 3.7791 -1.8754 44 1 4.1037 4.3994 -2.5182 45 1 0.6229 4.7608 -3.2135 46 1 0.1935 5.2588 -5.7789 47 1 5.5890 1.0428 0.9625 48 1 4.0807 0.0945 0.8427 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108704276.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:40 Heat of formation + Delta-G solvation = 190.913706 kcal Electronic energy + Delta-G solvation = -31180.319086 eV Core-core repulsion = 27277.581316 eV Total energy + Delta-G solvation = -3902.737770 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.24984 -42.97482 -39.92542 -37.18466 -36.00785 -34.90974 -33.90477 -33.18949 -32.34863 -32.02218 -29.88574 -28.73563 -26.94553 -25.15226 -24.84626 -23.67402 -22.92702 -22.62037 -22.23239 -21.27209 -20.28064 -19.54786 -19.23641 -18.48794 -17.74678 -17.27038 -16.87189 -16.48602 -16.15152 -15.86301 -15.72905 -15.43683 -15.13171 -14.82910 -14.75764 -14.25734 -14.04907 -13.91235 -13.71491 -13.59941 -13.48506 -13.32311 -13.14159 -13.04387 -12.74000 -12.68373 -12.44707 -12.38462 -12.22245 -11.98691 -11.70547 -11.48223 -11.24067 -11.18880 -10.99914 -10.86154 -10.72934 -10.42150 -10.39121 -9.66510 -8.92404 -7.99702 -5.37680 0.58988 1.09472 1.26735 1.35616 1.43905 1.45184 1.57395 1.89766 2.50197 3.18254 3.25762 3.40934 3.53394 3.55392 3.60549 3.66286 3.73027 3.79591 3.97146 4.02570 4.13484 4.14936 4.21694 4.26000 4.27197 4.27995 4.36838 4.42807 4.56783 4.58021 4.74715 4.78945 4.81040 4.85661 4.96861 4.98822 5.04007 5.08915 5.22191 5.22694 5.32463 5.36596 5.39602 5.57405 5.61570 5.83819 6.21548 6.38707 6.96337 7.12147 7.45723 7.86141 8.13038 9.18950 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015471 B = 0.004499 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.387186 B = 6222.053854 C = 7198.475649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.071 4.071 3 Si 0.882 3.118 4 H -0.216 1.216 5 H -0.300 1.300 6 H -0.190 1.190 7 C -0.253 4.253 8 H 0.029 0.971 9 N -0.754 5.754 10 C 0.161 3.839 11 H 0.034 0.966 12 C -0.126 4.126 13 C -0.084 4.084 14 H 0.132 0.868 15 C -0.108 4.108 16 C 0.124 3.876 17 H 0.093 0.907 18 C -0.136 4.136 19 N -0.606 5.606 20 C 0.521 3.479 21 O -0.577 6.577 22 C -0.172 4.172 23 C -0.105 4.105 24 C 0.109 3.891 25 N -0.289 5.289 26 C -0.045 4.045 27 C -0.060 4.060 28 N -0.312 5.312 29 N -0.122 5.122 30 C 0.029 3.971 31 H 0.257 0.743 32 H 0.384 0.616 33 H 0.050 0.950 34 H 0.092 0.908 35 H 0.112 0.888 36 H 0.094 0.906 37 H 0.025 0.975 38 H 0.105 0.895 39 H 0.151 0.849 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.044 0.956 43 H 0.124 0.876 44 H 0.138 0.862 45 H 0.225 0.775 46 H 0.222 0.778 47 H 0.084 0.916 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.214 7.506 5.605 17.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.262 4.262 3 Si 0.712 3.288 4 H -0.142 1.142 5 H -0.228 1.228 6 H -0.117 1.117 7 C -0.385 4.385 8 H 0.047 0.953 9 N -0.414 5.414 10 C 0.053 3.947 11 H 0.053 0.947 12 C -0.166 4.166 13 C -0.102 4.102 14 H 0.150 0.850 15 C -0.146 4.146 16 C 0.022 3.978 17 H 0.111 0.889 18 C -0.176 4.176 19 N -0.341 5.341 20 C 0.312 3.688 21 O -0.457 6.457 22 C -0.210 4.210 23 C -0.144 4.144 24 C -0.011 4.011 25 N -0.083 5.083 26 C -0.196 4.196 27 C -0.218 4.218 28 N -0.177 5.177 29 N -0.101 5.101 30 C -0.092 4.092 31 H 0.065 0.935 32 H 0.235 0.765 33 H 0.069 0.931 34 H 0.110 0.890 35 H 0.130 0.870 36 H 0.112 0.888 37 H 0.044 0.956 38 H 0.123 0.877 39 H 0.169 0.831 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.062 0.938 43 H 0.142 0.858 44 H 0.156 0.844 45 H 0.242 0.758 46 H 0.239 0.761 47 H 0.102 0.898 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 15.354 6.927 4.134 17.344 hybrid contribution -1.903 0.403 0.173 1.953 sum 13.451 7.330 4.307 15.913 Atomic orbital electron populations 1.69963 1.07790 1.26771 1.58945 1.25943 0.96315 1.02337 1.01578 0.87981 0.79491 0.79853 0.81484 1.14246 1.22806 1.11729 1.19190 0.84204 0.92836 1.42232 0.95336 1.44692 1.02563 1.16227 1.77912 1.20496 0.91562 0.89156 0.93528 0.94738 1.22263 0.98202 0.99337 0.96755 1.22615 0.94764 0.93585 0.99238 0.84978 1.23058 0.96773 1.04193 0.90566 1.22499 0.92524 0.82284 1.00529 0.88903 1.22433 0.97342 0.99544 0.98243 1.48933 1.53565 1.24511 1.07106 1.20526 0.77825 0.87061 0.83419 1.90674 1.56787 1.73525 1.24677 1.22870 1.03197 0.95218 0.99732 1.21413 1.00180 0.94750 0.98034 1.22654 1.00412 0.96516 0.81504 1.47689 1.11370 1.40608 1.08611 1.24454 0.88471 1.04639 1.02052 1.24252 0.99863 1.06475 0.91222 1.75036 1.01667 1.14976 1.26010 1.78245 1.23061 1.20934 0.87861 1.24028 1.05726 1.00189 0.79249 0.93478 0.76461 0.93124 0.88971 0.86962 0.88787 0.95583 0.87665 0.83090 0.89395 0.90030 0.93756 0.85798 0.84380 0.75829 0.76137 0.89789 0.86454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -61.93 13.97 21.65 0.30 -61.63 16 2 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 3 Si 0.88 35.23 21.86 68.60 1.50 36.73 16 4 H -0.22 -7.59 1.72 99.48 0.17 -7.42 16 5 H -0.30 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.19 -6.21 2.92 99.48 0.29 -5.92 16 7 C -0.25 -14.45 10.38 84.03 0.87 -13.57 16 8 H 0.03 1.86 7.95 -2.91 -0.02 1.84 16 9 N -0.75 -34.10 2.95 -322.91 -0.95 -35.06 16 10 C 0.16 5.92 3.14 44.99 0.14 6.06 16 11 H 0.03 1.43 7.86 -2.39 -0.02 1.41 16 12 C -0.13 -3.41 5.38 30.93 0.17 -3.25 16 13 C -0.08 -1.76 4.32 -9.05 -0.04 -1.80 16 14 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 15 C -0.11 -1.88 6.18 32.17 0.20 -1.68 16 16 C 0.12 3.38 3.96 45.78 0.18 3.56 16 17 H 0.09 2.55 8.09 -2.39 -0.02 2.53 16 18 C -0.14 -4.30 5.49 30.88 0.17 -4.13 16 19 N -0.61 -19.15 1.79 -784.47 -1.41 -20.56 16 20 C 0.52 18.81 6.50 87.66 0.57 19.38 16 21 O -0.58 -25.27 16.22 -3.05 -0.05 -25.32 16 22 C -0.17 -4.97 4.22 29.85 0.13 -4.84 16 23 C -0.11 -3.31 3.91 30.59 0.12 -3.19 16 24 C 0.11 2.58 6.18 86.38 0.53 3.11 16 25 N -0.29 -8.21 3.44 -347.73 -1.20 -9.41 16 26 C -0.04 -1.06 11.57 83.49 0.97 -0.10 16 27 C -0.06 -1.53 12.05 83.73 1.01 -0.52 16 28 N -0.31 -10.51 12.41 -58.26 -0.72 -11.23 16 29 N -0.12 -4.19 12.93 37.02 0.48 -3.71 16 30 C 0.03 0.81 3.59 86.85 0.31 1.12 16 31 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 32 H 0.38 15.70 0.71 -147.24 -0.11 15.60 16 33 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.09 1.88 7.97 -2.39 -0.02 1.86 16 35 H 0.11 1.43 7.75 -2.39 -0.02 1.41 16 36 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.11 2.49 8.00 -2.39 -0.02 2.47 16 39 H 0.15 2.86 8.14 -2.39 -0.02 2.84 16 40 H 0.09 2.72 0.28 -2.39 0.00 2.72 16 41 H 0.08 2.80 7.68 -2.39 -0.02 2.78 16 42 H 0.04 1.75 7.40 -2.39 -0.02 1.73 16 43 H 0.12 2.57 5.99 -2.38 -0.01 2.55 16 44 H 0.14 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.23 3.47 8.06 -2.91 -0.02 3.45 16 46 H 0.22 3.69 8.06 -2.91 -0.02 3.67 16 47 H 0.08 1.81 8.01 -2.39 -0.02 1.79 16 48 H 0.12 4.20 2.26 -11.72 -0.03 4.18 16 Total: -1.00 -87.02 342.93 3.66 -83.36 By element: Atomic # 1 Polarization: 50.34 SS G_CDS: -0.08 Total: 50.26 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: 5.79 Total: -3.43 kcal Atomic # 7 Polarization: -138.10 SS G_CDS: -3.50 Total: -141.60 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.05 Total: -25.32 kcal Atomic # 14 Polarization: 35.23 SS G_CDS: 1.50 Total: 36.73 kcal Total: -87.02 3.66 -83.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108704276.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 274.270 kcal (2) G-P(sol) polarization free energy of solvation -87.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 187.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 190.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds