Wall clock time and date at job start Tue Mar 31 2020 18:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00025 * 2 1 4 4 H 1.48499 * 109.46968 * 269.99932 * 3 2 1 5 5 H 1.48503 * 109.47185 * 30.00002 * 3 2 1 6 6 H 1.48501 * 109.47174 * 149.99981 * 3 2 1 7 7 C 1.38807 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00327 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99921 * 359.97438 * 7 2 1 10 10 C 1.50243 * 130.84131 * 359.97438 * 9 7 2 11 11 H 1.09007 * 115.85084 * 0.38700 * 10 9 7 12 12 C 1.55842 * 101.05139 * 234.00032 * 10 9 7 13 13 C 1.54851 * 103.44674 * 327.06064 * 12 10 9 14 14 C 1.50242 * 130.84001 * 180.02562 * 9 7 2 15 15 H 1.09002 * 115.85622 * 359.60605 * 14 9 7 16 16 C 1.55843 * 101.05085 * 233.93706 * 14 9 7 17 17 H 1.09007 * 110.62648 * 85.54914 * 16 14 9 18 18 N 1.46495 * 110.62623 * 208.57001 * 16 14 9 19 19 C 1.34778 * 120.00342 * 269.99257 * 18 16 14 20 20 O 1.21288 * 119.99747 * 0.02562 * 19 18 16 21 21 C 1.50696 * 120.00265 * 180.02562 * 19 18 16 22 22 C 1.53006 * 109.47096 * 180.02562 * 21 19 18 23 23 C 1.52994 * 109.46795 * 179.97438 * 22 21 19 24 24 C 1.53006 * 109.46795 * 180.02562 * 23 22 21 25 25 C 1.50705 * 109.46900 * 179.97438 * 24 23 22 26 26 C 1.35356 * 126.91129 * 84.99895 * 25 24 23 27 27 N 1.33768 * 106.49385 * 179.97438 * 26 25 24 28 28 N 1.28633 * 108.88872 * 0.02562 * 27 26 25 29 29 N 1.28712 * 110.17745 * 359.74558 * 28 27 26 30 30 H 0.97001 * 125.86962 * 180.24514 * 29 28 27 31 31 C 1.54851 * 103.44659 * 327.06093 * 16 14 9 32 32 H 0.97002 * 120.00187 * 359.97438 * 1 2 3 33 33 H 1.08997 * 110.62792 * 85.54919 * 12 10 9 34 34 H 1.08994 * 110.62660 * 208.56995 * 12 10 9 35 35 H 1.09001 * 110.62563 * 241.51589 * 13 12 10 36 36 H 1.08998 * 110.76598 * 118.55474 * 13 12 10 37 37 H 0.97001 * 120.00152 * 89.99791 * 18 16 14 38 38 H 1.09002 * 109.46750 * 300.00231 * 21 19 18 39 39 H 1.08997 * 109.46908 * 60.00274 * 21 19 18 40 40 H 1.08995 * 109.47026 * 299.99936 * 22 21 19 41 41 H 1.08998 * 109.46645 * 60.00026 * 22 21 19 42 42 H 1.09002 * 109.47678 * 300.00002 * 23 22 21 43 43 H 1.09001 * 109.47825 * 60.00276 * 23 22 21 44 44 H 1.09002 * 109.47145 * 299.99636 * 24 23 22 45 45 H 1.08997 * 109.47383 * 60.00212 * 24 23 22 46 46 H 1.07997 * 126.75068 * 359.94474 * 26 25 24 47 47 H 1.09007 * 110.62873 * 118.48889 * 31 16 14 48 48 H 1.08996 * 110.62591 * 241.35222 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1501 -2.6706 0.0005 11 1 -0.8014 -1.7965 -0.0053 12 6 -0.2734 -3.6103 1.2376 13 6 1.0677 -4.3846 1.2368 14 6 1.8187 -3.8072 -0.0005 15 1 2.9012 -3.9343 -0.0073 16 6 1.0662 -4.3849 -1.2370 17 1 1.6235 -4.1869 -2.1527 18 7 0.8325 -5.8219 -1.0738 19 6 1.7470 -6.7078 -1.5159 20 8 2.7636 -6.3153 -2.0483 21 6 1.5064 -8.1860 -1.3486 22 6 2.6885 -8.9642 -1.9302 23 6 2.4444 -10.4649 -1.7597 24 6 3.6268 -11.2430 -2.3407 25 6 3.3867 -12.7213 -2.1723 26 6 2.6836 -13.5301 -2.9991 27 7 2.7317 -14.7549 -2.4636 28 7 3.4184 -14.7076 -1.3769 29 7 3.8347 -13.5080 -1.1667 30 1 4.3751 -13.2174 -0.4153 31 6 -0.2749 -3.6106 -1.2364 32 1 -0.4850 0.8400 0.0004 33 1 -0.3801 -3.0282 2.1529 34 1 -1.1124 -4.2955 1.1171 35 1 0.8937 -5.4538 1.1158 36 1 1.6274 -4.1889 2.1513 37 1 0.0196 -6.1358 -0.6478 38 1 1.4040 -8.4197 -0.2889 39 1 0.5929 -8.4670 -1.8726 40 1 2.7913 -8.7304 -2.9898 41 1 3.6017 -8.6830 -1.4058 42 1 2.3418 -10.6983 -0.6999 43 1 1.5310 -10.7464 -2.2838 44 1 3.7297 -11.0097 -3.4005 45 1 4.5399 -10.9616 -1.8163 46 1 2.1820 -13.2428 -3.9114 47 1 -0.3827 -3.0287 -2.1518 48 1 -1.1139 -4.2961 -1.1176 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109559479.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:34 Heat of formation + Delta-G solvation = 85.598688 kcal Electronic energy + Delta-G solvation = -27974.928355 eV Core-core repulsion = 24067.623783 eV Total energy + Delta-G solvation = -3907.304572 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.69449 -40.06961 -38.52158 -36.25239 -33.92986 -33.75561 -32.72030 -32.31454 -29.78683 -29.21612 -28.97450 -27.55007 -25.35437 -24.12860 -23.36860 -22.38524 -21.61436 -21.26237 -20.33070 -19.52964 -18.64840 -18.53049 -17.20650 -16.76305 -16.39867 -16.21344 -15.48552 -15.13339 -14.93535 -14.83464 -14.61700 -14.27051 -13.97226 -13.81699 -13.09871 -12.96082 -12.62262 -12.33723 -12.19577 -11.96507 -11.76067 -11.67669 -11.55179 -11.49126 -11.22054 -11.07093 -10.99466 -10.94282 -10.92298 -10.90735 -10.86009 -10.25971 -10.12597 -9.89200 -9.67644 -9.52695 -9.38401 -9.26152 -8.96206 -8.52289 -6.94331 -5.75597 -3.13685 1.13662 2.15576 2.32324 2.85331 3.37187 3.40916 3.43604 3.45640 3.97979 4.21267 4.42391 4.46982 4.48660 4.73345 4.75048 4.94441 5.04011 5.10989 5.13551 5.17801 5.35424 5.35922 5.43965 5.46339 5.55921 5.58915 5.72862 5.77835 5.81611 5.91147 5.93714 6.03341 6.06338 6.08628 6.27721 6.29708 6.40172 6.50436 6.56319 6.66441 6.78328 6.93052 6.96542 7.24465 7.49560 7.72264 7.83380 8.04313 8.14153 8.49542 9.07613 9.70248 10.50408 11.34014 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.032292 B = 0.001781 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.891231 B =15715.451730 C =15964.525676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.013 4.013 3 Si 0.917 3.083 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.210 4.210 8 H 0.079 0.921 9 N -0.590 5.590 10 C 0.154 3.846 11 H 0.155 0.845 12 C -0.136 4.136 13 C -0.130 4.130 14 C 0.128 3.872 15 H 0.084 0.916 16 C 0.126 3.874 17 H 0.083 0.917 18 N -0.713 5.713 19 C 0.505 3.495 20 O -0.546 6.546 21 C -0.141 4.141 22 C -0.103 4.103 23 C -0.115 4.115 24 C -0.050 4.050 25 C -0.003 4.003 26 C -0.050 4.050 27 N -0.266 5.266 28 N -0.086 5.086 29 N -0.391 5.391 30 H 0.447 0.553 31 C -0.142 4.142 32 H 0.254 0.746 33 H 0.055 0.945 34 H 0.045 0.955 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.395 0.605 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.098 0.902 45 H 0.081 0.919 46 H 0.191 0.809 47 H 0.064 0.936 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.640 -21.920 -2.132 22.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.208 4.208 3 Si 0.748 3.252 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.338 4.338 8 H 0.097 0.903 9 N -0.311 5.311 10 C 0.047 3.953 11 H 0.171 0.829 12 C -0.176 4.176 13 C -0.169 4.169 14 C 0.019 3.981 15 H 0.102 0.898 16 C 0.020 3.980 17 H 0.101 0.899 18 N -0.364 5.364 19 C 0.291 3.709 20 O -0.423 6.423 21 C -0.182 4.182 22 C -0.141 4.141 23 C -0.154 4.154 24 C -0.090 4.090 25 C -0.137 4.137 26 C -0.207 4.207 27 N -0.134 5.134 28 N -0.066 5.066 29 N -0.111 5.111 30 H 0.293 0.707 31 C -0.182 4.182 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.229 0.771 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.117 0.883 45 H 0.099 0.901 46 H 0.208 0.792 47 H 0.083 0.917 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.309 -22.797 -2.105 23.010 hybrid contribution 0.390 1.899 0.371 1.974 sum 2.699 -20.897 -1.734 21.142 Atomic orbital electron populations 1.69431 1.04990 1.24998 1.57767 1.24701 0.95664 0.97530 1.02893 0.86026 0.78495 0.83134 0.77578 1.21634 1.21667 1.20773 1.19058 0.90365 0.81867 1.42508 0.90327 1.46486 1.01602 0.98829 1.84164 1.23771 0.87716 0.95193 0.88625 0.82866 1.23037 0.95070 0.98177 1.01312 1.22896 0.97641 0.97487 0.98912 1.23185 0.96102 0.86155 0.92653 0.89824 1.22631 0.98023 0.77076 1.00253 0.89922 1.46285 1.22395 1.07285 1.60440 1.20615 0.83611 0.88372 0.78275 1.90700 1.27266 1.80840 1.43540 1.21674 1.00817 0.92388 1.03280 1.21317 0.97959 0.92277 1.02582 1.21637 0.97699 0.94805 1.01226 1.20237 0.99858 0.84862 1.04034 1.22427 1.02752 0.96832 0.91731 1.23457 1.04757 0.89311 1.03149 1.75106 1.13902 1.21726 1.02622 1.78306 1.12951 1.01381 1.13984 1.45159 1.37842 1.07195 1.20946 0.70709 1.23308 0.94058 0.98456 1.02334 0.93551 0.92659 0.93649 0.93148 0.93130 0.77102 0.89212 0.89139 0.90744 0.90950 0.91859 0.91029 0.88341 0.90085 0.79220 0.91710 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.87 10.46 55.49 0.58 -25.29 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.92 21.80 29.55 -169.99 -5.02 16.78 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.21 -5.72 10.59 -15.06 -0.16 -5.88 16 8 H 0.08 2.11 7.83 -52.48 -0.41 1.69 16 9 N -0.59 -14.45 2.99 -145.81 -0.44 -14.88 16 10 C 0.15 3.37 4.72 -62.79 -0.30 3.08 16 11 H 0.15 3.88 5.52 -51.93 -0.29 3.59 16 12 C -0.14 -2.54 6.44 -24.24 -0.16 -2.70 16 13 C -0.13 -2.29 6.32 -24.24 -0.15 -2.44 16 14 C 0.13 2.61 5.35 -62.81 -0.34 2.27 16 15 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 16 C 0.13 2.27 3.14 -65.44 -0.21 2.06 16 17 H 0.08 1.70 7.58 -51.92 -0.39 1.31 16 18 N -0.71 -9.63 3.71 -51.40 -0.19 -9.82 16 19 C 0.51 6.72 7.83 -10.99 -0.09 6.63 16 20 O -0.55 -9.63 15.65 5.55 0.09 -9.54 16 21 C -0.14 -1.15 5.70 -27.88 -0.16 -1.31 16 22 C -0.10 -0.76 4.50 -26.73 -0.12 -0.88 16 23 C -0.12 -0.56 5.20 -26.73 -0.14 -0.69 16 24 C -0.05 -0.21 5.78 -27.88 -0.16 -0.37 16 25 C 0.00 -0.02 6.56 -82.08 -0.54 -0.56 16 26 C -0.05 -0.38 11.99 -17.74 -0.21 -0.59 16 27 N -0.27 -2.87 12.41 30.23 0.38 -2.49 16 28 N -0.09 -0.85 13.38 60.35 0.81 -0.04 16 29 N -0.39 -2.44 6.98 33.55 0.23 -2.21 16 30 H 0.45 1.21 8.96 -190.40 -1.71 -0.49 16 31 C -0.14 -2.61 6.20 -24.23 -0.15 -2.76 16 32 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 33 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.04 0.70 7.82 -51.93 -0.41 0.30 16 35 H 0.05 0.74 6.39 -51.93 -0.33 0.41 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.39 4.27 7.92 -40.82 -0.32 3.94 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 41 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 42 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 43 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 46 H 0.19 0.93 8.06 -52.49 -0.42 0.51 16 47 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 48 H 0.05 0.83 7.39 -51.93 -0.38 0.44 16 LS Contribution 385.66 15.07 5.81 5.81 Total: -1.00 -33.93 385.66 -9.59 -43.52 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -8.87 Total: 2.73 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -2.97 Total: -4.57 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: 1.37 Total: -54.73 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.09 Total: -9.54 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.93 -9.59 -43.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109559479.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.119 kcal (2) G-P(sol) polarization free energy of solvation -33.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds