Wall clock time and date at job start Tue Mar 31 2020 18:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00025 * 2 1 4 4 H 1.48499 * 109.46968 * 269.99932 * 3 2 1 5 5 H 1.48503 * 109.47185 * 30.00002 * 3 2 1 6 6 H 1.48501 * 109.47174 * 149.99981 * 3 2 1 7 7 C 1.38807 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00327 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99921 * 359.97438 * 7 2 1 10 10 C 1.50243 * 130.84131 * 359.97438 * 9 7 2 11 11 H 1.09007 * 115.85084 * 0.38700 * 10 9 7 12 12 C 1.55842 * 101.05139 * 234.00032 * 10 9 7 13 13 C 1.54851 * 103.44674 * 327.06064 * 12 10 9 14 14 C 1.50242 * 130.84001 * 180.02562 * 9 7 2 15 15 H 1.09002 * 115.85622 * 359.60605 * 14 9 7 16 16 C 1.55843 * 101.05085 * 233.93706 * 14 9 7 17 17 H 1.09007 * 110.62648 * 85.54914 * 16 14 9 18 18 N 1.46495 * 110.62623 * 208.57001 * 16 14 9 19 19 C 1.34778 * 120.00342 * 269.99257 * 18 16 14 20 20 O 1.21288 * 119.99747 * 0.02562 * 19 18 16 21 21 C 1.50696 * 120.00265 * 180.02562 * 19 18 16 22 22 C 1.53006 * 109.47096 * 180.02562 * 21 19 18 23 23 C 1.52994 * 109.46795 * 179.97438 * 22 21 19 24 24 C 1.53006 * 109.46795 * 180.02562 * 23 22 21 25 25 C 1.50705 * 109.46900 * 179.97438 * 24 23 22 26 26 C 1.35356 * 126.91129 * 84.99895 * 25 24 23 27 27 N 1.33768 * 106.49385 * 179.97438 * 26 25 24 28 28 N 1.28633 * 108.88872 * 0.02562 * 27 26 25 29 29 N 1.28712 * 110.17745 * 359.74558 * 28 27 26 30 30 H 0.97001 * 125.86962 * 180.24514 * 29 28 27 31 31 C 1.54851 * 103.44659 * 327.06093 * 16 14 9 32 32 H 0.97002 * 120.00187 * 359.97438 * 1 2 3 33 33 H 1.08997 * 110.62792 * 85.54919 * 12 10 9 34 34 H 1.08994 * 110.62660 * 208.56995 * 12 10 9 35 35 H 1.09001 * 110.62563 * 241.51589 * 13 12 10 36 36 H 1.08998 * 110.76598 * 118.55474 * 13 12 10 37 37 H 0.97001 * 120.00152 * 89.99791 * 18 16 14 38 38 H 1.09002 * 109.46750 * 300.00231 * 21 19 18 39 39 H 1.08997 * 109.46908 * 60.00274 * 21 19 18 40 40 H 1.08995 * 109.47026 * 299.99936 * 22 21 19 41 41 H 1.08998 * 109.46645 * 60.00026 * 22 21 19 42 42 H 1.09002 * 109.47678 * 300.00002 * 23 22 21 43 43 H 1.09001 * 109.47825 * 60.00276 * 23 22 21 44 44 H 1.09002 * 109.47145 * 299.99636 * 24 23 22 45 45 H 1.08997 * 109.47383 * 60.00212 * 24 23 22 46 46 H 1.07997 * 126.75068 * 359.94474 * 26 25 24 47 47 H 1.09007 * 110.62873 * 118.48889 * 31 16 14 48 48 H 1.08996 * 110.62591 * 241.35222 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1501 -2.6706 0.0005 11 1 -0.8014 -1.7965 -0.0053 12 6 -0.2734 -3.6103 1.2376 13 6 1.0677 -4.3846 1.2368 14 6 1.8187 -3.8072 -0.0005 15 1 2.9012 -3.9343 -0.0073 16 6 1.0662 -4.3849 -1.2370 17 1 1.6235 -4.1869 -2.1527 18 7 0.8325 -5.8219 -1.0738 19 6 1.7470 -6.7078 -1.5159 20 8 2.7636 -6.3153 -2.0483 21 6 1.5064 -8.1860 -1.3486 22 6 2.6885 -8.9642 -1.9302 23 6 2.4444 -10.4649 -1.7597 24 6 3.6268 -11.2430 -2.3407 25 6 3.3867 -12.7213 -2.1723 26 6 2.6836 -13.5301 -2.9991 27 7 2.7317 -14.7549 -2.4636 28 7 3.4184 -14.7076 -1.3769 29 7 3.8347 -13.5080 -1.1667 30 1 4.3751 -13.2174 -0.4153 31 6 -0.2749 -3.6106 -1.2364 32 1 -0.4850 0.8400 0.0004 33 1 -0.3801 -3.0282 2.1529 34 1 -1.1124 -4.2955 1.1171 35 1 0.8937 -5.4538 1.1158 36 1 1.6274 -4.1889 2.1513 37 1 0.0196 -6.1358 -0.6478 38 1 1.4040 -8.4197 -0.2889 39 1 0.5929 -8.4670 -1.8726 40 1 2.7913 -8.7304 -2.9898 41 1 3.6017 -8.6830 -1.4058 42 1 2.3418 -10.6983 -0.6999 43 1 1.5310 -10.7464 -2.2838 44 1 3.7297 -11.0097 -3.4005 45 1 4.5399 -10.9616 -1.8163 46 1 2.1820 -13.2428 -3.9114 47 1 -0.3827 -3.0287 -2.1518 48 1 -1.1139 -4.2961 -1.1176 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109559479.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:33 Heat of formation + Delta-G solvation = 62.717708 kcal Electronic energy + Delta-G solvation = -27975.920549 eV Core-core repulsion = 24067.623783 eV Total energy + Delta-G solvation = -3908.296766 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.24486 -41.42489 -39.82519 -36.77847 -35.38523 -34.34293 -34.17501 -33.26006 -31.01752 -30.84654 -30.12969 -28.93023 -26.38895 -25.63808 -23.95796 -23.13793 -22.66304 -22.04312 -21.56613 -21.00300 -20.10977 -19.13303 -18.90649 -17.90095 -17.01551 -16.87268 -16.82553 -16.71346 -16.20603 -15.83076 -15.43706 -15.41305 -15.01023 -14.92104 -14.13645 -13.99268 -13.67516 -13.52311 -13.43275 -13.24400 -12.96349 -12.88361 -12.78692 -12.61153 -12.45623 -12.35845 -12.17523 -12.04562 -12.00223 -11.89058 -11.76607 -11.56489 -11.55273 -11.36772 -11.17006 -11.03582 -10.75970 -10.68820 -10.07743 -9.90766 -8.85058 -7.80129 -5.19271 0.62112 1.45388 1.46602 1.54624 1.57407 1.82282 1.92913 2.32731 2.51987 3.33280 3.50086 3.56400 3.77216 3.89279 3.99061 4.03833 4.08643 4.14489 4.17715 4.24467 4.42534 4.45218 4.48289 4.57647 4.62767 4.65141 4.71362 4.76083 4.83709 4.89106 4.93476 5.01003 5.04649 5.08689 5.16558 5.18120 5.26141 5.29261 5.35053 5.43486 5.47835 5.55176 5.59480 5.80263 5.90652 6.02915 6.28304 6.76891 7.05458 7.46661 7.47158 7.69148 8.55121 9.26570 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.032292 B = 0.001781 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.891231 B =15715.451730 C =15964.525676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.065 4.065 3 Si 0.975 3.025 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.224 4.224 8 H 0.070 0.930 9 N -0.620 5.620 10 C 0.136 3.864 11 H 0.119 0.881 12 C -0.125 4.125 13 C -0.114 4.114 14 C 0.118 3.882 15 H 0.064 0.936 16 C 0.146 3.854 17 H 0.049 0.951 18 N -0.702 5.702 19 C 0.501 3.499 20 O -0.594 6.594 21 C -0.131 4.131 22 C -0.101 4.101 23 C -0.105 4.105 24 C -0.046 4.046 25 C 0.012 3.988 26 C -0.062 4.062 27 N -0.306 5.306 28 N -0.120 5.120 29 N -0.378 5.378 30 H 0.461 0.539 31 C -0.127 4.127 32 H 0.249 0.751 33 H 0.033 0.967 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.040 0.960 37 H 0.415 0.585 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.107 0.893 45 H 0.092 0.908 46 H 0.212 0.788 47 H 0.041 0.959 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.801 -24.054 -1.655 24.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.257 4.257 3 Si 0.804 3.196 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.201 1.201 7 C -0.353 4.353 8 H 0.088 0.912 9 N -0.342 5.342 10 C 0.030 3.970 11 H 0.136 0.864 12 C -0.164 4.164 13 C -0.154 4.154 14 C 0.010 3.990 15 H 0.082 0.918 16 C 0.038 3.962 17 H 0.067 0.933 18 N -0.355 5.355 19 C 0.290 3.710 20 O -0.475 6.475 21 C -0.171 4.171 22 C -0.139 4.139 23 C -0.143 4.143 24 C -0.086 4.086 25 C -0.123 4.123 26 C -0.220 4.220 27 N -0.172 5.172 28 N -0.099 5.099 29 N -0.101 5.101 30 H 0.310 0.690 31 C -0.167 4.167 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.059 0.941 37 H 0.252 0.748 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.089 0.911 43 H 0.098 0.902 44 H 0.125 0.875 45 H 0.110 0.890 46 H 0.229 0.771 47 H 0.060 0.940 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.457 -25.005 -1.592 25.098 hybrid contribution 0.711 2.579 0.184 2.681 sum 2.168 -22.426 -1.408 22.575 Atomic orbital electron populations 1.69667 1.05840 1.25028 1.58788 1.25412 0.96580 1.00188 1.03561 0.85120 0.77548 0.79646 0.77267 1.21688 1.21725 1.20139 1.19289 0.90456 0.83653 1.41902 0.91181 1.46761 1.03122 0.99565 1.84795 1.23697 0.85885 0.95515 0.91878 0.86397 1.22930 0.97085 0.97972 0.98430 1.22798 0.96310 0.99487 0.96763 1.23338 0.95698 0.84711 0.95261 0.91792 1.22000 0.96817 0.79887 0.97466 0.93296 1.46059 1.23505 1.05112 1.60796 1.21635 0.82350 0.90411 0.76600 1.90695 1.29368 1.81965 1.45481 1.21739 1.02167 0.87695 1.05453 1.21267 0.97219 0.93890 1.01512 1.21525 0.98134 0.92734 1.01906 1.20290 1.00217 0.83242 1.04833 1.22658 1.01427 0.97359 0.90852 1.23953 1.05207 0.88679 1.04151 1.75058 1.15092 1.23602 1.03470 1.78243 1.14273 1.02933 1.14458 1.45202 1.37129 1.06436 1.21294 0.69027 1.23132 0.95723 0.98249 0.99557 0.94160 0.94804 0.89268 0.89003 0.94109 0.74753 0.86526 0.86288 0.92070 0.92403 0.91054 0.90188 0.87482 0.88971 0.77147 0.94004 0.88468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.56 10.46 21.65 0.23 -54.33 16 2 C -0.06 -3.64 5.50 84.86 0.47 -3.17 16 3 Si 0.97 46.00 29.55 68.60 2.03 48.03 16 4 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 7 C -0.22 -12.63 10.59 84.03 0.89 -11.74 16 8 H 0.07 3.92 7.83 -2.91 -0.02 3.89 16 9 N -0.62 -31.08 2.99 -615.23 -1.84 -32.91 16 10 C 0.14 5.97 4.72 46.23 0.22 6.19 16 11 H 0.12 6.12 5.52 -2.38 -0.01 6.11 16 12 C -0.12 -4.37 6.44 32.21 0.21 -4.16 16 13 C -0.11 -3.76 6.32 32.20 0.20 -3.56 16 14 C 0.12 4.78 5.35 46.22 0.25 5.03 16 15 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 16 C 0.15 5.11 3.14 46.61 0.15 5.25 16 17 H 0.05 2.06 7.58 -2.38 -0.02 2.04 16 18 N -0.70 -16.61 3.71 -434.91 -1.61 -18.22 16 19 C 0.50 11.95 7.83 87.66 0.69 12.64 16 20 O -0.59 -20.54 15.65 -3.05 -0.05 -20.59 16 21 C -0.13 -1.53 5.70 29.85 0.17 -1.36 16 22 C -0.10 -1.16 4.50 30.59 0.14 -1.02 16 23 C -0.10 -0.59 5.20 30.59 0.16 -0.43 16 24 C -0.05 -0.23 5.78 29.85 0.17 -0.06 16 25 C 0.01 0.12 6.56 41.36 0.27 0.39 16 26 C -0.06 -0.84 11.99 83.73 1.00 0.17 16 27 N -0.31 -6.37 12.41 -58.26 -0.72 -7.09 16 28 N -0.12 -2.27 13.38 37.02 0.50 -1.77 16 29 N -0.38 -4.03 6.98 -47.78 -0.33 -4.36 16 30 H 0.46 1.56 8.96 -219.96 -1.97 -0.41 16 31 C -0.13 -4.51 6.20 32.22 0.20 -4.31 16 32 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 33 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.09 2.34 7.82 -2.39 -0.02 2.32 16 35 H 0.09 2.25 6.39 -2.39 -0.02 2.23 16 36 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.41 6.67 7.92 -92.71 -0.73 5.94 16 38 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.06 0.88 8.10 -2.39 -0.02 0.86 16 41 H 0.06 0.85 8.10 -2.39 -0.02 0.83 16 42 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 44 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 46 H 0.21 1.59 8.06 -2.91 -0.02 1.57 16 47 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 48 H 0.10 2.57 7.39 -2.39 -0.02 2.56 16 Total: -1.00 -79.46 385.66 1.66 -77.80 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -1.72 Total: 13.60 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: 5.18 Total: -0.15 kcal Atomic # 7 Polarization: -114.91 SS G_CDS: -3.78 Total: -118.69 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -0.05 Total: -20.59 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -79.46 1.66 -77.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109559479.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.514 kcal (2) G-P(sol) polarization free energy of solvation -79.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds