Wall clock time and date at job start Tue Mar 31 2020 17:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 120.00033 * 2 1 4 4 H 1.48504 * 109.46876 * 269.99835 * 3 2 1 5 5 H 1.48497 * 109.46966 * 30.00171 * 3 2 1 6 6 H 1.48494 * 109.46785 * 149.99968 * 3 2 1 7 7 C 1.37882 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99864 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99882 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46890 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46937 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.47037 * 179.97438 * 11 10 9 13 13 N 1.30286 * 126.35123 * 270.04353 * 12 11 10 14 14 N 1.28531 * 110.05484 * 179.97438 * 13 12 11 15 15 C 1.31217 * 109.86037 * 359.97438 * 14 13 12 16 16 N 1.38580 * 126.47563 * 179.97438 * 15 14 13 17 17 C 1.47192 * 110.99766 * 257.11873 * 16 15 14 18 18 C 1.52988 * 108.72878 * 54.36532 * 17 16 15 19 19 N 1.46003 * 110.04076 * 50.29286 * 18 17 16 20 20 C 1.33718 * 122.93001 * 341.83464 * 19 18 17 21 21 O 1.21286 * 118.62718 * 181.68392 * 20 19 18 22 22 C 1.46902 * 111.00147 * 20.00443 * 16 15 14 23 23 N 1.36453 * 107.05328 * 359.97438 * 15 14 13 24 24 C 1.46494 * 127.13731 * 180.26182 * 23 15 14 25 25 C 1.53006 * 109.47172 * 271.50976 * 24 23 15 26 26 C 1.53004 * 117.49871 * 243.62098 * 25 24 23 27 27 C 1.52996 * 117.49777 * 174.99914 * 25 24 23 28 28 H 0.97001 * 119.99809 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47177 * 59.99849 * 9 7 2 30 30 H 1.08998 * 109.47256 * 300.00175 * 9 7 2 31 31 H 1.08997 * 109.47454 * 59.99872 * 10 9 7 32 32 H 1.09000 * 109.46774 * 299.99767 * 10 9 7 33 33 H 1.09000 * 109.47271 * 60.00210 * 11 10 9 34 34 H 1.08998 * 109.47306 * 300.00088 * 11 10 9 35 35 H 1.08998 * 109.59657 * 174.13897 * 17 16 15 36 36 H 1.08998 * 109.59241 * 294.59748 * 17 16 15 37 37 H 1.09003 * 109.37853 * 170.46784 * 18 17 16 38 38 H 1.08997 * 109.37754 * 290.23177 * 18 17 16 39 39 H 0.97001 * 118.53794 * 161.81633 * 19 18 17 40 40 H 1.09007 * 109.37985 * 47.09440 * 22 16 15 41 41 H 1.08999 * 109.38638 * 166.77636 * 22 16 15 42 42 H 1.08997 * 109.47362 * 31.50791 * 24 23 15 43 43 H 1.09004 * 109.47567 * 151.50994 * 24 23 15 44 44 H 1.08997 * 115.54560 * 29.33098 * 25 24 23 45 45 H 1.08998 * 117.49600 * 0.02562 * 26 25 24 46 46 H 1.08998 * 117.49681 * 145.02147 * 26 25 24 47 47 H 1.09004 * 117.49877 * 214.98040 * 27 25 24 48 48 H 1.09006 * 117.50233 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0010 11 6 5.5515 -2.6365 0.0009 12 6 6.0539 -4.0573 0.0015 13 7 6.3106 -4.7853 1.0510 14 7 6.7216 -5.9486 0.6908 15 6 6.7488 -6.0260 -0.6188 16 7 7.1368 -7.1230 -1.3714 17 6 8.4919 -6.9369 -1.9152 18 6 9.4447 -6.6182 -0.7615 19 7 9.2815 -7.5990 0.3077 20 6 8.2044 -8.3838 0.4160 21 8 8.1358 -9.1504 1.3534 22 6 7.0755 -8.3560 -0.5751 23 7 6.3228 -4.8222 -1.0997 24 6 6.1788 -4.4317 -2.5043 25 6 7.5010 -3.8514 -3.0105 26 6 7.5091 -2.3835 -3.4418 27 6 7.5920 -3.4907 -4.4945 28 1 -0.4850 0.8401 -0.0004 29 1 3.8745 -0.6800 0.8911 30 1 3.8752 -0.6804 -0.8888 31 1 3.6586 -3.1502 -0.8892 32 1 3.6579 -3.1505 0.8908 33 1 5.9149 -2.1228 0.8910 34 1 5.9149 -2.1226 -0.8890 35 1 8.8144 -7.8510 -2.4138 36 1 8.4900 -6.1110 -2.6265 37 1 10.4726 -6.6453 -1.1233 38 1 9.2238 -5.6235 -0.3743 39 1 9.9861 -7.6853 0.9688 40 1 6.1253 -8.3957 -0.0425 41 1 7.1537 -9.2185 -1.2371 42 1 5.9144 -5.3060 -3.0992 43 1 5.3943 -3.6804 -2.5941 44 1 8.3992 -4.2405 -2.5311 45 1 6.5726 -1.8311 -3.3646 46 1 8.4129 -1.8064 -3.2461 47 1 8.5503 -3.6420 -4.9914 48 1 6.7098 -3.6663 -5.1103 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123492071.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:10 Heat of formation + Delta-G solvation = 78.521391 kcal Electronic energy + Delta-G solvation = -29677.433374 eV Core-core repulsion = 25769.821907 eV Total energy + Delta-G solvation = -3907.611467 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.17609 -40.68820 -38.16421 -37.67760 -35.23070 -34.77455 -34.16259 -32.42401 -30.44231 -30.16426 -28.18775 -27.43175 -26.38589 -24.16450 -23.58119 -22.80934 -22.12023 -21.31639 -20.66636 -20.18296 -19.65391 -18.02311 -17.29474 -17.14826 -16.70073 -16.36256 -16.12301 -15.67488 -15.32830 -15.02929 -14.72856 -14.39212 -14.28421 -14.10751 -13.87545 -13.59529 -13.27352 -12.94431 -12.74195 -12.43590 -12.34477 -12.20646 -11.98391 -11.91151 -11.84721 -11.56500 -11.22583 -11.13006 -10.90563 -10.86516 -10.55166 -10.28643 -10.16167 -10.01099 -9.91565 -9.79403 -9.47072 -9.39910 -9.24143 -8.57449 -8.48195 -6.07120 -4.05833 1.64859 2.00690 2.42071 2.77413 2.92761 3.26128 3.26526 3.35495 3.37415 3.38057 3.99985 4.15979 4.23685 4.30843 4.38762 4.41558 4.45293 4.52621 4.62542 4.68335 4.79367 4.84628 4.98289 5.02961 5.09640 5.15486 5.23084 5.26484 5.26680 5.31740 5.51265 5.61460 5.66484 5.70072 5.75176 5.87314 5.92761 6.05025 6.38592 6.42743 6.47768 6.51555 6.77133 6.97452 6.99581 7.21627 7.34107 7.74593 7.93807 8.50319 8.78066 8.97938 9.54566 11.06384 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015119 B = 0.003090 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.488041 B = 9058.052412 C =10179.690571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.071 0.929 9 C -0.011 4.011 10 C -0.095 4.095 11 C -0.039 4.039 12 C 0.210 3.790 13 N -0.286 5.286 14 N -0.306 5.306 15 C 0.323 3.677 16 N -0.443 5.443 17 C 0.034 3.966 18 C 0.080 3.920 19 N -0.716 5.716 20 C 0.510 3.490 21 O -0.545 6.545 22 C 0.057 3.943 23 N -0.464 5.464 24 C 0.137 3.863 25 C -0.182 4.182 26 C -0.173 4.173 27 C -0.165 4.165 28 H 0.263 0.737 29 H 0.020 0.980 30 H 0.011 0.989 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.402 0.598 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.106 0.894 45 H 0.105 0.895 46 H 0.097 0.903 47 H 0.098 0.902 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.771 -11.647 -12.190 28.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.089 0.911 9 C -0.048 4.048 10 C -0.134 4.134 11 C -0.079 4.079 12 C -0.057 4.057 13 N -0.125 5.125 14 N -0.150 5.150 15 C -0.033 4.033 16 N -0.167 5.167 17 C -0.094 4.094 18 C -0.047 4.047 19 N -0.370 5.370 20 C 0.296 3.704 21 O -0.421 6.421 22 C -0.073 4.073 23 N -0.157 5.157 24 C 0.014 3.986 25 C -0.201 4.201 26 C -0.209 4.209 27 C -0.202 4.202 28 H 0.073 0.927 29 H 0.038 0.962 30 H 0.029 0.971 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.115 0.885 34 H 0.097 0.903 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.105 0.895 38 H 0.082 0.918 39 H 0.238 0.762 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.124 0.876 45 H 0.123 0.877 46 H 0.116 0.884 47 H 0.117 0.883 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 22.191 -12.388 -10.820 27.622 hybrid contribution 0.991 1.430 -0.644 1.855 sum 23.182 -10.958 -11.464 28.087 Atomic orbital electron populations 1.69915 1.06340 1.26914 1.50983 1.25039 0.94726 0.99169 0.94555 0.86782 0.80475 0.83657 0.78403 1.20360 1.21369 1.18876 1.21109 0.89394 0.94492 1.50956 0.91077 1.19563 0.97322 0.91542 0.96419 1.21482 0.89521 1.00577 1.01847 1.20392 0.98634 0.84706 1.04124 1.25255 1.01341 0.97622 0.81468 1.74087 1.16585 0.98087 1.23764 1.74660 1.19700 1.13932 1.06726 1.22289 1.04612 0.86696 0.89731 1.59142 1.25222 0.99285 1.33043 1.22885 0.84745 1.05218 0.96548 1.21989 1.01087 0.92911 0.88670 1.45349 1.22008 1.39007 1.30594 1.20630 0.83322 0.79653 0.86832 1.90770 1.78928 1.39805 1.32576 1.22376 0.99393 0.91243 0.94312 1.46153 1.49931 1.11134 1.08491 1.21535 0.97128 1.02338 0.77604 1.22645 0.98423 1.00034 0.98967 1.23163 1.04346 0.90725 1.02713 1.22976 1.03789 1.02977 0.90474 0.92703 0.96215 0.97051 0.92991 0.91759 0.88484 0.90256 0.87765 0.87684 0.89527 0.91792 0.76242 0.85913 0.85768 0.87744 0.87639 0.87556 0.87711 0.88434 0.88333 0.88068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.59 13.96 55.43 0.77 -26.81 16 2 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.07 27.47 -169.99 -4.67 16.40 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.26 -6.02 6.54 56.52 0.37 -5.65 16 7 C -0.52 -14.54 9.66 -34.44 -0.33 -14.87 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 10 C -0.10 -1.79 5.14 -26.73 -0.14 -1.93 16 11 C -0.04 -0.58 5.40 -27.88 -0.15 -0.73 16 12 C 0.21 3.20 7.32 -154.02 -1.13 2.07 16 13 N -0.29 -5.11 12.18 32.99 0.40 -4.71 16 14 N -0.31 -5.04 10.47 30.31 0.32 -4.72 16 15 C 0.32 4.12 5.23 -318.88 -1.67 2.45 16 16 N -0.44 -4.12 5.07 -175.91 -0.89 -5.01 16 17 C 0.03 0.20 6.02 -3.67 -0.02 0.18 16 18 C 0.08 0.55 6.64 -4.32 -0.03 0.52 16 19 N -0.72 -6.83 5.47 -61.07 -0.33 -7.17 16 20 C 0.51 6.23 6.52 -11.68 -0.08 6.15 16 21 O -0.54 -8.94 17.83 5.55 0.10 -8.84 16 22 C 0.06 0.56 5.61 -5.19 -0.03 0.53 16 23 N -0.46 -5.66 2.81 -114.08 -0.32 -5.98 16 24 C 0.14 1.21 6.14 -4.04 -0.02 1.19 16 25 C -0.18 -1.23 5.10 -90.62 -0.46 -1.69 16 26 C -0.17 -1.19 10.18 -26.73 -0.27 -1.47 16 27 C -0.16 -0.88 10.25 -26.73 -0.27 -1.16 16 28 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 30 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 34 H 0.08 1.00 7.88 -51.93 -0.41 0.59 16 35 H 0.10 0.40 8.08 -51.93 -0.42 -0.02 16 36 H 0.11 0.50 5.46 -51.93 -0.28 0.22 16 37 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 0.60 7.43 -51.93 -0.39 0.21 16 39 H 0.40 3.58 8.84 -40.82 -0.36 3.22 16 40 H 0.12 1.45 7.95 -51.93 -0.41 1.04 16 41 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.11 1.00 7.53 -51.93 -0.39 0.61 16 44 H 0.11 0.71 6.67 -51.93 -0.35 0.37 16 45 H 0.10 0.81 8.03 -51.93 -0.42 0.40 16 46 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 386.93 15.07 5.83 5.83 Total: -1.00 -36.43 386.93 -11.19 -47.62 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -7.58 Total: 0.69 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -4.82 Total: -7.31 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -0.05 Total: -54.40 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.10 Total: -8.84 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.43 -11.19 -47.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123492071.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.144 kcal (2) G-P(sol) polarization free energy of solvation -36.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds