Wall clock time and date at job start Tue Mar 31 2020 18:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 119.99939 * 2 1 4 4 H 1.48504 * 109.47153 * 239.99895 * 3 2 1 5 5 H 1.48502 * 109.47040 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47138 * 119.99891 * 3 2 1 7 7 C 1.38812 * 119.99730 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99651 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00437 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00009 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46970 * 180.02562 * 10 9 7 12 12 N 1.30971 * 126.60729 * 269.97997 * 11 10 9 13 13 N 1.29033 * 109.70613 * 179.97438 * 12 11 10 14 14 C 1.29897 * 109.22251 * 359.92690 * 13 12 11 15 15 N 1.34600 * 107.61856 * 0.19288 * 14 13 12 16 16 C 1.47498 * 125.03394 * 179.65906 * 15 14 13 17 17 C 1.53637 * 107.07454 * 65.96985 * 16 15 14 18 18 C 1.50867 * 111.12881 * 279.66476 * 17 16 15 19 19 H 1.08996 * 108.02571 * 310.88815 * 18 17 16 20 20 N 1.46506 * 108.02627 * 194.43909 * 18 17 16 21 21 C 1.34777 * 119.99873 * 151.55175 * 20 18 17 22 22 O 1.21284 * 119.99754 * 359.97438 * 21 20 18 23 23 C 1.50696 * 120.00137 * 179.97438 * 21 20 18 24 24 C 1.53002 * 109.47300 * 179.97438 * 23 21 20 25 25 C 1.53003 * 117.49756 * 243.62113 * 24 23 21 26 26 C 1.52995 * 117.49779 * 175.00007 * 24 23 21 27 27 C 1.50951 * 116.56201 * 72.66471 * 18 17 16 28 28 C 1.51881 * 127.80681 * 180.38881 * 14 13 12 29 29 H 0.97000 * 120.00023 * 359.97438 * 1 2 3 30 30 H 0.96998 * 119.99672 * 0.02562 * 9 7 2 31 31 H 1.08999 * 109.46816 * 60.00956 * 10 9 7 32 32 H 1.08996 * 109.47587 * 300.00525 * 10 9 7 33 33 H 1.08994 * 109.93334 * 306.58256 * 16 15 14 34 34 H 1.08995 * 109.93436 * 185.35654 * 16 15 14 35 35 H 1.09001 * 109.14844 * 159.23986 * 17 16 15 36 36 H 1.09010 * 109.14991 * 40.08668 * 17 16 15 37 37 H 0.96995 * 120.00050 * 331.27289 * 20 18 17 38 38 H 1.09004 * 109.47043 * 299.99732 * 23 21 20 39 39 H 1.09000 * 109.46978 * 59.99653 * 23 21 20 40 40 H 1.08992 * 115.55034 * 29.32590 * 24 23 21 41 41 H 1.09006 * 117.49486 * 0.02562 * 25 24 23 42 42 H 1.08996 * 117.49867 * 145.01923 * 25 24 23 43 43 H 1.08996 * 117.49758 * 214.97652 * 26 24 23 44 44 H 1.09002 * 117.50380 * 359.97438 * 26 24 23 45 45 H 1.09004 * 109.18154 * 47.86599 * 27 18 17 46 46 H 1.09000 * 109.18484 * 167.10420 * 27 18 17 47 47 H 1.09001 * 109.97199 * 234.03698 * 28 14 13 48 48 H 1.09007 * 109.96691 * 355.24926 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 1.0788 -4.8023 -0.0021 12 7 0.5720 -5.3968 1.0491 13 7 -0.2310 -6.3345 0.6737 14 6 -0.2675 -6.3721 -0.6243 15 7 0.5572 -5.4123 -1.0830 16 6 0.8108 -5.1234 -2.5070 17 6 -0.5054 -4.6007 -3.1026 18 6 -1.4424 -5.7365 -3.4314 19 1 -0.8841 -6.4806 -3.9994 20 7 -2.5030 -5.2133 -4.2962 21 6 -3.1140 -6.0266 -5.1804 22 8 -2.7854 -7.1913 -5.2605 23 6 -4.2053 -5.4887 -6.0696 24 6 -4.7262 -6.6088 -6.9723 25 6 -4.5286 -6.4496 -8.4812 26 6 -5.9230 -6.2926 -7.8714 27 6 -2.0944 -6.4337 -2.2621 28 6 -1.0788 -7.3052 -1.5062 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 2.6853 -3.7149 0.8879 32 1 2.6842 -3.7142 -0.8921 33 1 1.1161 -6.0340 -3.0223 34 1 1.5877 -4.3645 -2.5995 35 1 -0.2887 -4.0411 -4.0126 36 1 -0.9856 -3.9382 -2.3824 37 1 -2.7682 -4.2827 -4.2296 38 1 -5.0209 -5.1085 -5.4544 39 1 -3.8077 -4.6817 -6.6851 40 1 -4.6592 -7.6151 -6.5591 41 1 -4.0271 -5.5471 -8.8306 42 1 -4.3314 -7.3514 -9.0608 43 1 -6.6432 -7.0910 -8.0499 44 1 -6.3397 -5.2867 -7.8195 45 1 -2.5024 -5.6863 -1.5816 46 1 -2.9049 -7.0643 -2.6276 47 1 -0.4232 -7.8122 -2.2141 48 1 -1.6005 -8.0387 -0.8913 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127919335.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:40 Heat of formation + Delta-G solvation = 74.285791 kcal Electronic energy + Delta-G solvation = -28754.072322 eV Core-core repulsion = 24846.277186 eV Total energy + Delta-G solvation = -3907.795136 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.00193 -40.33799 -38.03282 -36.99581 -35.20559 -34.52774 -33.43815 -31.57139 -31.39170 -29.75092 -29.19650 -26.31760 -25.67515 -24.21201 -22.89791 -22.73086 -21.87228 -21.19191 -20.51004 -20.33699 -19.88247 -17.66343 -17.48321 -16.95563 -16.49797 -15.92855 -15.77471 -15.35950 -14.94471 -14.72251 -14.46038 -14.37633 -14.06873 -13.88555 -13.57535 -13.27430 -12.91951 -12.90673 -12.73227 -12.57341 -12.27012 -11.87998 -11.85239 -11.80416 -11.71949 -11.44356 -11.10713 -11.02347 -10.91097 -10.86576 -10.72090 -10.40246 -10.24510 -10.10459 -9.97249 -9.89025 -9.81009 -9.37517 -9.02659 -8.68250 -7.10322 -5.87690 -3.19395 2.14433 2.40028 2.71187 2.80095 3.23243 3.37230 3.42848 3.43432 3.46305 4.18948 4.29804 4.35571 4.37599 4.48438 4.53008 4.56221 4.66135 4.74950 4.82239 4.91352 4.97291 5.05250 5.13406 5.14670 5.19383 5.28121 5.29328 5.33397 5.36052 5.46928 5.54665 5.58438 5.75309 5.75646 5.78253 5.87300 5.93424 5.94725 6.00512 6.18351 6.20613 6.29676 6.53671 6.57799 7.16112 7.22640 7.57583 7.96870 8.27776 9.13459 9.40525 9.91105 10.27802 11.34341 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011407 B = 0.002836 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.041448 B = 9871.808979 C =11771.657881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.246 4.246 8 H 0.074 0.926 9 N -0.723 5.723 10 C 0.236 3.764 11 C 0.192 3.808 12 N -0.294 5.294 13 N -0.297 5.297 14 C 0.159 3.841 15 N -0.463 5.463 16 C 0.113 3.887 17 C -0.144 4.144 18 C 0.146 3.854 19 H 0.084 0.916 20 N -0.731 5.731 21 C 0.517 3.483 22 O -0.538 6.538 23 C -0.113 4.113 24 C -0.140 4.140 25 C -0.179 4.179 26 C -0.181 4.181 27 C -0.127 4.127 28 C -0.022 4.022 29 H 0.257 0.743 30 H 0.386 0.614 31 H 0.057 0.943 32 H 0.037 0.963 33 H 0.094 0.906 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.403 0.597 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.118 0.882 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.072 0.928 46 H 0.083 0.917 47 H 0.086 0.914 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.807 -12.970 -16.955 22.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.377 4.377 8 H 0.092 0.908 9 N -0.369 5.369 10 C 0.107 3.893 11 C -0.075 4.075 12 N -0.134 5.134 13 N -0.137 5.137 14 C -0.109 4.109 15 N -0.154 5.154 16 C -0.010 4.010 17 C -0.183 4.183 18 C 0.042 3.958 19 H 0.102 0.898 20 N -0.382 5.382 21 C 0.304 3.696 22 O -0.415 6.415 23 C -0.152 4.152 24 C -0.159 4.159 25 C -0.216 4.216 26 C -0.218 4.218 27 C -0.167 4.167 28 C -0.062 4.062 29 H 0.067 0.933 30 H 0.220 0.780 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.112 0.888 34 H 0.132 0.868 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.237 0.763 38 H 0.117 0.883 39 H 0.113 0.887 40 H 0.136 0.864 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.090 0.910 46 H 0.101 0.899 47 H 0.104 0.896 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.714 -14.008 -15.570 22.319 hybrid contribution 0.222 1.873 -1.235 2.255 sum -7.492 -12.135 -16.805 22.041 Atomic orbital electron populations 1.69668 1.05192 1.25990 1.56846 1.24766 0.95536 0.97780 1.02372 0.86220 0.78507 0.83163 0.77960 1.21176 1.21649 1.21032 1.19142 0.91088 0.83509 1.43942 0.90806 1.42261 1.05956 0.98928 1.89756 1.19058 0.89451 0.80646 1.00188 1.25240 1.00821 0.99320 0.82156 1.74575 1.09267 1.05619 1.23904 1.74192 1.16158 1.15544 1.07771 1.24637 0.97819 0.95336 0.93114 1.46064 1.33926 1.26767 1.08621 1.22267 0.98800 1.02915 0.77051 1.21903 0.94863 0.98163 1.03333 1.20346 0.88070 0.96023 0.91329 0.89788 1.46288 1.38927 1.14195 1.38806 1.20593 0.82764 0.86256 0.80038 1.90691 1.64540 1.17101 1.69161 1.21246 0.97451 0.98659 0.97884 1.22046 1.01991 1.00243 0.91590 1.23038 0.99599 1.03315 0.95624 1.23005 0.91397 1.02948 1.04464 1.21714 0.98642 0.99542 0.96768 1.20351 0.95466 0.94587 0.95784 0.93318 0.77990 0.92528 0.94574 0.88825 0.86781 0.88624 0.89408 0.76271 0.88334 0.88695 0.86379 0.88825 0.88765 0.88671 0.88718 0.90959 0.89880 0.89584 0.87871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.16 13.06 55.49 0.72 -26.43 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 3 Si 0.91 21.55 29.55 -169.99 -5.02 16.52 16 4 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.25 -6.55 9.99 -15.06 -0.15 -6.70 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 N -0.72 -17.73 5.59 -61.09 -0.34 -18.07 16 10 C 0.24 4.71 6.55 -5.19 -0.03 4.68 16 11 C 0.19 3.68 7.45 -155.39 -1.16 2.52 16 12 N -0.29 -6.31 12.25 32.71 0.40 -5.91 16 13 N -0.30 -5.83 12.23 32.84 0.40 -5.42 16 14 C 0.16 2.48 7.02 -155.74 -1.09 1.39 16 15 N -0.46 -7.09 2.72 -109.59 -0.30 -7.39 16 16 C 0.11 1.27 6.48 -3.16 -0.02 1.24 16 17 C -0.14 -1.49 5.07 -27.47 -0.14 -1.63 16 18 C 0.15 1.41 1.91 -70.03 -0.13 1.28 16 19 H 0.08 0.85 7.01 -51.93 -0.36 0.48 16 20 N -0.73 -6.17 4.94 -55.86 -0.28 -6.44 16 21 C 0.52 4.92 7.48 -10.99 -0.08 4.83 16 22 O -0.54 -6.99 14.89 5.55 0.08 -6.90 16 23 C -0.11 -0.77 5.98 -27.88 -0.17 -0.93 16 24 C -0.14 -1.08 5.41 -90.62 -0.49 -1.57 16 25 C -0.18 -1.22 10.18 -26.73 -0.27 -1.49 16 26 C -0.18 -1.13 10.25 -26.73 -0.27 -1.40 16 27 C -0.13 -1.36 5.12 -27.40 -0.14 -1.50 16 28 C -0.02 -0.24 6.02 -26.94 -0.16 -0.40 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.39 10.31 7.66 -40.82 -0.31 10.00 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.04 0.65 7.28 -51.93 -0.38 0.27 16 33 H 0.09 0.80 7.87 -51.93 -0.41 0.40 16 34 H 0.11 1.30 7.04 -51.93 -0.37 0.93 16 35 H 0.10 0.84 8.12 -51.93 -0.42 0.42 16 36 H 0.09 1.17 8.08 -51.92 -0.42 0.75 16 37 H 0.40 2.72 8.58 -40.82 -0.35 2.37 16 38 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.09 0.51 7.87 -51.93 -0.41 0.10 16 40 H 0.12 1.12 7.30 -51.93 -0.38 0.74 16 41 H 0.09 0.57 8.03 -51.93 -0.42 0.16 16 42 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.90 7.91 -51.93 -0.41 0.49 16 46 H 0.08 0.88 7.54 -51.93 -0.39 0.49 16 47 H 0.09 0.81 7.89 -51.93 -0.41 0.40 16 48 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 390.17 15.07 5.88 5.88 Total: -1.00 -34.44 390.17 -10.38 -44.82 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -7.52 Total: 9.35 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -4.41 Total: 0.00 kcal Atomic # 7 Polarization: -70.28 SS G_CDS: 0.61 Total: -69.67 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: 0.08 Total: -6.90 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.44 -10.38 -44.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127919335.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.106 kcal (2) G-P(sol) polarization free energy of solvation -34.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds