Wall clock time and date at job start Tue Mar 31 2020 18:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 119.99939 * 2 1 4 4 H 1.48504 * 109.47153 * 239.99895 * 3 2 1 5 5 H 1.48502 * 109.47040 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47138 * 119.99891 * 3 2 1 7 7 C 1.38812 * 119.99730 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99651 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00437 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00009 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46970 * 180.02562 * 10 9 7 12 12 N 1.30971 * 126.60729 * 269.97997 * 11 10 9 13 13 N 1.29033 * 109.70613 * 179.97438 * 12 11 10 14 14 C 1.29897 * 109.22251 * 359.92690 * 13 12 11 15 15 N 1.34600 * 107.61856 * 0.19288 * 14 13 12 16 16 C 1.47498 * 125.03394 * 179.65906 * 15 14 13 17 17 C 1.53637 * 107.07454 * 65.96985 * 16 15 14 18 18 C 1.50867 * 111.12881 * 279.66476 * 17 16 15 19 19 H 1.08996 * 108.02571 * 310.88815 * 18 17 16 20 20 N 1.46506 * 108.02627 * 194.43909 * 18 17 16 21 21 C 1.34777 * 119.99873 * 151.55175 * 20 18 17 22 22 O 1.21284 * 119.99754 * 359.97438 * 21 20 18 23 23 C 1.50696 * 120.00137 * 179.97438 * 21 20 18 24 24 C 1.53002 * 109.47300 * 179.97438 * 23 21 20 25 25 C 1.53003 * 117.49756 * 243.62113 * 24 23 21 26 26 C 1.52995 * 117.49779 * 175.00007 * 24 23 21 27 27 C 1.50951 * 116.56201 * 72.66471 * 18 17 16 28 28 C 1.51881 * 127.80681 * 180.38881 * 14 13 12 29 29 H 0.97000 * 120.00023 * 359.97438 * 1 2 3 30 30 H 0.96998 * 119.99672 * 0.02562 * 9 7 2 31 31 H 1.08999 * 109.46816 * 60.00956 * 10 9 7 32 32 H 1.08996 * 109.47587 * 300.00525 * 10 9 7 33 33 H 1.08994 * 109.93334 * 306.58256 * 16 15 14 34 34 H 1.08995 * 109.93436 * 185.35654 * 16 15 14 35 35 H 1.09001 * 109.14844 * 159.23986 * 17 16 15 36 36 H 1.09010 * 109.14991 * 40.08668 * 17 16 15 37 37 H 0.96995 * 120.00050 * 331.27289 * 20 18 17 38 38 H 1.09004 * 109.47043 * 299.99732 * 23 21 20 39 39 H 1.09000 * 109.46978 * 59.99653 * 23 21 20 40 40 H 1.08992 * 115.55034 * 29.32590 * 24 23 21 41 41 H 1.09006 * 117.49486 * 0.02562 * 25 24 23 42 42 H 1.08996 * 117.49867 * 145.01923 * 25 24 23 43 43 H 1.08996 * 117.49758 * 214.97652 * 26 24 23 44 44 H 1.09002 * 117.50380 * 359.97438 * 26 24 23 45 45 H 1.09004 * 109.18154 * 47.86599 * 27 18 17 46 46 H 1.09000 * 109.18484 * 167.10420 * 27 18 17 47 47 H 1.09001 * 109.97199 * 234.03698 * 28 14 13 48 48 H 1.09007 * 109.96691 * 355.24926 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 1.0788 -4.8023 -0.0021 12 7 0.5720 -5.3968 1.0491 13 7 -0.2310 -6.3345 0.6737 14 6 -0.2675 -6.3721 -0.6243 15 7 0.5572 -5.4123 -1.0830 16 6 0.8108 -5.1234 -2.5070 17 6 -0.5054 -4.6007 -3.1026 18 6 -1.4424 -5.7365 -3.4314 19 1 -0.8841 -6.4806 -3.9994 20 7 -2.5030 -5.2133 -4.2962 21 6 -3.1140 -6.0266 -5.1804 22 8 -2.7854 -7.1913 -5.2605 23 6 -4.2053 -5.4887 -6.0696 24 6 -4.7262 -6.6088 -6.9723 25 6 -4.5286 -6.4496 -8.4812 26 6 -5.9230 -6.2926 -7.8714 27 6 -2.0944 -6.4337 -2.2621 28 6 -1.0788 -7.3052 -1.5062 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 2.6853 -3.7149 0.8879 32 1 2.6842 -3.7142 -0.8921 33 1 1.1161 -6.0340 -3.0223 34 1 1.5877 -4.3645 -2.5995 35 1 -0.2887 -4.0411 -4.0126 36 1 -0.9856 -3.9382 -2.3824 37 1 -2.7682 -4.2827 -4.2296 38 1 -5.0209 -5.1085 -5.4544 39 1 -3.8077 -4.6817 -6.6851 40 1 -4.6592 -7.6151 -6.5591 41 1 -4.0271 -5.5471 -8.8306 42 1 -4.3314 -7.3514 -9.0608 43 1 -6.6432 -7.0910 -8.0499 44 1 -6.3397 -5.2867 -7.8195 45 1 -2.5024 -5.6863 -1.5816 46 1 -2.9049 -7.0643 -2.6276 47 1 -0.4232 -7.8122 -2.2141 48 1 -1.6005 -8.0387 -0.8913 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127919335.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:39 Heat of formation + Delta-G solvation = 52.220720 kcal Electronic energy + Delta-G solvation = -28755.029135 eV Core-core repulsion = 24846.277186 eV Total energy + Delta-G solvation = -3908.751950 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.34172 -41.10897 -38.80352 -37.71682 -36.91417 -35.68109 -34.60376 -33.27740 -32.40625 -30.97081 -30.16107 -27.83327 -26.78646 -25.38789 -24.73775 -23.21445 -22.67200 -22.25299 -21.57476 -21.23237 -20.82757 -19.43021 -18.36989 -18.05454 -17.42540 -17.17489 -16.60912 -16.47350 -16.12123 -15.99604 -15.79282 -15.28118 -15.12016 -14.93635 -14.65911 -14.44312 -14.34414 -14.11321 -13.86531 -13.46311 -13.24900 -13.12995 -12.94566 -12.74081 -12.67260 -12.51252 -12.37140 -12.30868 -12.19338 -12.15087 -11.90952 -11.87439 -11.35736 -11.28122 -11.18960 -10.99180 -10.93863 -10.69462 -10.20007 -10.07064 -9.10223 -7.95949 -5.28270 0.81763 1.49800 1.52815 1.53926 1.59252 1.67681 1.79805 2.10902 2.57132 2.94615 3.15569 3.35419 3.38725 3.47541 3.61725 3.73085 3.78491 3.80246 3.94831 4.02647 4.05168 4.07606 4.19065 4.19578 4.27815 4.30044 4.44663 4.56959 4.59399 4.64592 4.69008 4.79455 4.81771 4.82668 4.87762 5.00029 5.02685 5.06430 5.08033 5.10822 5.19717 5.28789 5.35739 5.47733 5.49354 5.93244 6.20978 6.55047 7.26446 7.29473 7.72582 7.93743 8.21836 9.26884 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011407 B = 0.002836 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.041448 B = 9871.808979 C =11771.657881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.069 4.069 3 Si 0.977 3.023 4 H -0.270 1.270 5 H -0.299 1.299 6 H -0.281 1.281 7 C -0.246 4.246 8 H 0.087 0.913 9 N -0.733 5.733 10 C 0.241 3.759 11 C 0.180 3.820 12 N -0.337 5.337 13 N -0.339 5.339 14 C 0.178 3.822 15 N -0.454 5.454 16 C 0.105 3.895 17 C -0.133 4.133 18 C 0.151 3.849 19 H 0.090 0.910 20 N -0.723 5.723 21 C 0.516 3.484 22 O -0.575 6.575 23 C -0.106 4.106 24 C -0.156 4.156 25 C -0.183 4.183 26 C -0.171 4.171 27 C -0.118 4.118 28 C -0.018 4.018 29 H 0.251 0.749 30 H 0.372 0.628 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.130 0.870 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.055 0.945 37 H 0.412 0.588 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.094 0.906 41 H 0.103 0.897 42 H 0.091 0.909 43 H 0.097 0.903 44 H 0.108 0.892 45 H 0.050 0.950 46 H 0.087 0.913 47 H 0.115 0.885 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.307 -12.954 -19.325 24.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.261 4.261 3 Si 0.805 3.195 4 H -0.196 1.196 5 H -0.225 1.225 6 H -0.208 1.208 7 C -0.377 4.377 8 H 0.104 0.896 9 N -0.377 5.377 10 C 0.112 3.888 11 C -0.089 4.089 12 N -0.177 5.177 13 N -0.179 5.179 14 C -0.091 4.091 15 N -0.145 5.145 16 C -0.017 4.017 17 C -0.172 4.172 18 C 0.047 3.953 19 H 0.108 0.892 20 N -0.375 5.375 21 C 0.304 3.696 22 O -0.454 6.454 23 C -0.146 4.146 24 C -0.174 4.174 25 C -0.220 4.220 26 C -0.208 4.208 27 C -0.158 4.158 28 C -0.058 4.058 29 H 0.060 0.940 30 H 0.203 0.797 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.148 0.852 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.074 0.926 37 H 0.248 0.752 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.113 0.887 41 H 0.121 0.879 42 H 0.109 0.891 43 H 0.116 0.884 44 H 0.126 0.874 45 H 0.069 0.931 46 H 0.105 0.895 47 H 0.133 0.867 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.178 -13.999 -17.959 23.875 hybrid contribution 0.046 1.754 -0.531 1.833 sum -7.132 -12.245 -18.490 23.296 Atomic orbital electron populations 1.69836 1.06776 1.26249 1.58883 1.25586 0.96312 1.01135 1.03104 0.85172 0.77126 0.78807 0.78353 1.19600 1.22501 1.20751 1.19583 0.91794 0.84295 1.42066 0.89564 1.42380 1.05380 1.00151 1.89799 1.19077 0.89453 0.79229 1.01003 1.24937 1.01339 0.99516 0.83109 1.74453 1.10526 1.06880 1.25836 1.74090 1.17320 1.16349 1.10118 1.25367 0.96454 0.94760 0.92528 1.46225 1.32904 1.25798 1.09524 1.22689 0.99298 1.04834 0.74830 1.21809 0.94312 0.97893 1.03164 1.20219 0.88293 0.95800 0.91027 0.89152 1.46225 1.38414 1.14638 1.38201 1.21058 0.82851 0.85735 0.79941 1.90677 1.65763 1.18699 1.70299 1.21270 0.96978 0.98653 0.97677 1.21991 1.03690 0.99522 0.92225 1.23121 1.00268 1.03645 0.94924 1.23079 0.91026 1.03766 1.02889 1.21621 0.98578 0.98993 0.96580 1.20607 0.95493 0.93977 0.95703 0.93979 0.79714 0.93210 0.91476 0.85214 0.86704 0.86531 0.92617 0.75165 0.86706 0.86726 0.88731 0.87884 0.89085 0.88415 0.87366 0.93127 0.89481 0.86718 0.87056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.42 13.06 21.65 0.28 -57.14 16 2 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 3 Si 0.98 44.10 29.55 68.60 2.03 46.12 16 4 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 5 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.25 -13.00 9.99 84.03 0.84 -12.16 16 8 H 0.09 4.25 7.83 -2.91 -0.02 4.23 16 9 N -0.73 -36.15 5.59 -347.18 -1.94 -38.09 16 10 C 0.24 9.53 6.55 85.63 0.56 10.09 16 11 C 0.18 6.92 7.45 138.12 1.03 7.95 16 12 N -0.34 -14.83 12.25 -50.43 -0.62 -15.45 16 13 N -0.34 -13.53 12.23 -50.00 -0.61 -14.15 16 14 C 0.18 5.44 7.02 138.82 0.98 6.41 16 15 N -0.45 -13.50 2.72 -500.64 -1.36 -14.86 16 16 C 0.10 2.10 6.48 86.40 0.56 2.66 16 17 C -0.13 -2.51 5.07 30.11 0.15 -2.36 16 18 C 0.15 2.61 1.91 43.63 0.08 2.69 16 19 H 0.09 1.54 7.01 -2.39 -0.02 1.52 16 20 N -0.72 -10.80 4.94 -449.05 -2.22 -13.02 16 21 C 0.52 8.91 7.48 87.66 0.66 9.56 16 22 O -0.57 -14.21 14.89 -3.04 -0.05 -14.26 16 23 C -0.11 -1.22 5.98 29.85 0.18 -1.04 16 24 C -0.16 -2.21 5.41 -10.79 -0.06 -2.27 16 25 C -0.18 -2.21 10.18 30.59 0.31 -1.90 16 26 C -0.17 -1.80 10.25 30.59 0.31 -1.49 16 27 C -0.12 -2.36 5.12 30.16 0.15 -2.21 16 28 C -0.02 -0.36 6.02 30.46 0.18 -0.18 16 29 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 30 H 0.37 20.33 7.66 -92.71 -0.71 19.62 16 31 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.07 2.27 7.28 -2.39 -0.02 2.25 16 33 H 0.13 1.71 7.87 -2.39 -0.02 1.69 16 34 H 0.11 2.34 7.04 -2.39 -0.02 2.32 16 35 H 0.12 1.74 8.12 -2.39 -0.02 1.72 16 36 H 0.06 1.46 8.08 -2.38 -0.02 1.44 16 37 H 0.41 4.76 8.58 -92.71 -0.80 3.96 16 38 H 0.11 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.11 0.88 7.87 -2.39 -0.02 0.86 16 40 H 0.09 1.80 7.30 -2.39 -0.02 1.78 16 41 H 0.10 1.03 8.03 -2.38 -0.02 1.02 16 42 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.05 1.24 7.91 -2.39 -0.02 1.22 16 46 H 0.09 1.73 7.54 -2.39 -0.02 1.71 16 47 H 0.11 1.77 7.89 -2.39 -0.02 1.75 16 48 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 Total: -1.00 -76.46 390.17 1.41 -75.05 By element: Atomic # 1 Polarization: 33.85 SS G_CDS: -0.51 Total: 33.33 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 6.41 Total: 12.45 kcal Atomic # 7 Polarization: -146.23 SS G_CDS: -6.47 Total: -152.70 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.05 Total: -14.26 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -76.46 1.41 -75.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127919335.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.270 kcal (2) G-P(sol) polarization free energy of solvation -76.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds