Wall clock time and date at job start Tue Mar 31 2020 17:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 119.99963 * 2 1 4 4 H 1.48495 * 109.47132 * 240.00644 * 3 2 1 5 5 H 1.48500 * 109.46878 * 0.02562 * 3 2 1 6 6 H 1.48491 * 109.47252 * 120.00166 * 3 2 1 7 7 C 1.38814 * 120.00168 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99714 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99705 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99673 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46946 * 179.97438 * 10 9 7 12 12 N 1.30969 * 126.61202 * 269.95792 * 11 10 9 13 13 N 1.29032 * 109.70978 * 179.97438 * 12 11 10 14 14 C 1.29919 * 109.21797 * 0.02921 * 13 12 11 15 15 N 1.34578 * 107.61099 * 0.04549 * 14 13 12 16 16 C 1.47507 * 125.00434 * 179.68599 * 15 14 13 17 17 C 1.53632 * 107.07469 * 66.02620 * 16 15 14 18 18 C 1.50858 * 111.13987 * 279.64009 * 17 16 15 19 19 H 1.08995 * 107.99902 * 310.89890 * 18 17 16 20 20 N 1.46506 * 108.02659 * 194.46538 * 18 17 16 21 21 C 1.34774 * 119.99984 * 148.07015 * 20 18 17 22 22 O 1.21282 * 120.00010 * 359.97438 * 21 20 18 23 23 C 1.50698 * 120.00211 * 180.02562 * 21 20 18 24 24 C 1.53780 * 113.61180 * 279.13287 * 23 21 20 25 25 C 1.53952 * 87.02175 * 220.04528 * 24 23 21 26 26 C 1.53773 * 113.61564 * 181.52874 * 23 21 20 27 27 C 1.50953 * 116.58499 * 72.67559 * 18 17 16 28 28 C 1.51882 * 127.77461 * 180.42616 * 14 13 12 29 29 H 0.97006 * 120.00061 * 359.97438 * 1 2 3 30 30 H 0.96993 * 120.00409 * 359.97438 * 9 7 2 31 31 H 1.08994 * 109.47487 * 59.99952 * 10 9 7 32 32 H 1.08999 * 109.46712 * 299.99650 * 10 9 7 33 33 H 1.09006 * 109.93005 * 306.63794 * 16 15 14 34 34 H 1.08993 * 109.93460 * 185.42219 * 16 15 14 35 35 H 1.09003 * 109.14322 * 159.21530 * 17 16 15 36 36 H 1.08999 * 109.14865 * 40.07266 * 17 16 15 37 37 H 0.96996 * 119.99862 * 328.06340 * 20 18 17 38 38 H 1.08997 * 112.84975 * 50.32294 * 23 21 20 39 39 H 1.09005 * 113.61340 * 334.56832 * 24 23 21 40 40 H 1.09006 * 113.61650 * 105.46932 * 24 23 21 41 41 H 1.08996 * 113.53945 * 270.81247 * 25 24 23 42 42 H 1.09005 * 113.74254 * 139.93834 * 25 24 23 43 43 H 1.09009 * 113.61327 * 254.52714 * 26 23 21 44 44 H 1.08997 * 113.61703 * 25.34112 * 26 23 21 45 45 H 1.09000 * 109.18436 * 167.15016 * 27 18 17 46 46 H 1.08994 * 109.19047 * 47.90424 * 27 18 17 47 47 H 1.09002 * 109.96940 * 355.21400 * 28 14 13 48 48 H 1.09002 * 109.96188 * 233.99746 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0581 -3.6567 -0.0016 11 6 1.0788 -4.8022 -0.0022 12 7 0.5715 -5.3966 1.0487 13 7 -0.2313 -6.3344 0.6730 14 6 -0.2654 -6.3735 -0.6251 15 7 0.5580 -5.4127 -1.0832 16 6 0.8128 -5.1249 -2.5073 17 6 -0.5033 -4.6041 -3.1048 18 6 -1.4388 -5.7408 -3.4340 19 1 -0.8787 -6.4846 -4.0007 20 7 -2.4985 -5.2193 -4.3009 21 6 -3.0589 -6.0148 -5.2333 22 8 -2.6856 -7.1623 -5.3552 23 6 -4.1486 -5.4783 -6.1254 24 6 -5.5370 -5.4688 -5.4643 25 6 -6.0982 -5.9277 -6.8224 26 6 -4.7081 -6.5196 -7.1089 27 6 -2.0920 -6.4382 -2.2654 28 6 -1.0766 -7.3071 -1.5067 29 1 -0.4850 0.8401 0.0004 30 1 0.3556 -2.3880 -0.0016 31 1 2.6841 -3.7149 0.8888 32 1 2.6854 -3.7140 -0.8912 33 1 1.1194 -6.0359 -3.0214 34 1 1.5892 -4.3655 -2.5999 35 1 -0.2861 -4.0448 -4.0149 36 1 -0.9849 -3.9415 -2.3856 37 1 -2.7969 -4.3015 -4.2036 38 1 -3.8826 -4.5318 -6.5959 39 1 -5.6488 -6.2099 -4.6727 40 1 -5.8717 -4.4753 -5.1657 41 1 -6.3666 -5.1036 -7.4834 42 1 -6.8842 -6.6786 -6.7414 43 1 -4.3745 -6.3732 -8.1363 44 1 -4.5915 -7.5485 -6.7686 45 1 -2.9008 -7.0703 -2.6321 46 1 -2.5023 -5.6911 -1.5861 47 1 -1.5995 -8.0394 -0.8915 48 1 -0.4204 -7.8155 -2.2132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127931995.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:31 Heat of formation + Delta-G solvation = 70.309658 kcal Electronic energy + Delta-G solvation = -29082.822172 eV Core-core repulsion = 25174.854617 eV Total energy + Delta-G solvation = -3907.967554 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.00142 -40.67363 -38.49496 -36.99971 -35.20371 -34.52434 -33.40976 -31.50883 -31.20978 -29.41272 -27.51782 -26.13967 -25.99624 -25.37672 -24.20426 -22.89471 -21.53910 -21.13770 -20.51073 -20.01235 -19.59220 -17.79543 -17.53778 -16.93196 -16.49911 -15.90382 -15.76115 -15.08868 -15.02812 -14.87199 -14.66452 -14.18394 -14.05515 -13.59375 -13.28197 -13.15513 -12.90976 -12.83814 -12.82407 -12.61866 -12.39726 -12.28757 -11.84974 -11.73679 -11.59269 -11.39387 -11.10734 -11.02194 -10.92650 -10.89634 -10.85341 -10.77921 -10.24245 -10.03846 -9.97353 -9.88302 -9.76670 -9.36673 -9.02414 -8.68162 -7.10066 -5.87396 -3.19096 2.14461 2.38263 2.71374 2.85644 3.23303 3.37530 3.43087 3.43686 4.12023 4.19455 4.21529 4.34397 4.37266 4.43458 4.48716 4.53652 4.65414 4.78216 4.83279 4.91983 4.97890 5.13949 5.16337 5.20974 5.29972 5.33699 5.34934 5.41196 5.46979 5.51257 5.58721 5.59203 5.71448 5.74836 5.78114 5.87667 5.94440 5.99352 6.03518 6.18579 6.22179 6.29908 6.53697 6.57964 7.16193 7.24989 7.57857 7.98406 8.28004 9.13441 9.40828 9.91396 10.28137 11.34629 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011350 B = 0.003042 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.447085 B = 9202.360466 C =10983.454030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.246 4.246 8 H 0.074 0.926 9 N -0.723 5.723 10 C 0.236 3.764 11 C 0.193 3.807 12 N -0.294 5.294 13 N -0.297 5.297 14 C 0.159 3.841 15 N -0.462 5.462 16 C 0.113 3.887 17 C -0.144 4.144 18 C 0.144 3.856 19 H 0.086 0.914 20 N -0.727 5.727 21 C 0.524 3.476 22 O -0.541 6.541 23 C -0.140 4.140 24 C -0.124 4.124 25 C -0.143 4.143 26 C -0.117 4.117 27 C -0.126 4.126 28 C -0.022 4.022 29 H 0.257 0.743 30 H 0.386 0.614 31 H 0.057 0.943 32 H 0.037 0.963 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.403 0.597 38 H 0.113 0.887 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.094 0.906 45 H 0.081 0.919 46 H 0.072 0.928 47 H 0.103 0.897 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.461 -12.893 -16.136 22.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.377 4.377 8 H 0.092 0.908 9 N -0.369 5.369 10 C 0.106 3.894 11 C -0.075 4.075 12 N -0.134 5.134 13 N -0.137 5.137 14 C -0.109 4.109 15 N -0.153 5.153 16 C -0.010 4.010 17 C -0.182 4.182 18 C 0.040 3.960 19 H 0.104 0.896 20 N -0.378 5.378 21 C 0.310 3.690 22 O -0.418 6.418 23 C -0.162 4.162 24 C -0.162 4.162 25 C -0.180 4.180 26 C -0.155 4.155 27 C -0.166 4.166 28 C -0.062 4.062 29 H 0.067 0.933 30 H 0.220 0.780 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.112 0.888 34 H 0.132 0.868 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.237 0.763 38 H 0.131 0.869 39 H 0.104 0.896 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.113 0.887 45 H 0.100 0.900 46 H 0.091 0.909 47 H 0.121 0.879 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.336 -13.917 -14.776 21.943 hybrid contribution 0.287 1.906 -1.177 2.259 sum -8.049 -12.011 -15.953 21.530 Atomic orbital electron populations 1.69666 1.05200 1.25988 1.56837 1.24762 0.95527 0.97770 1.02357 0.86222 0.78514 0.83174 0.77960 1.21173 1.21642 1.21034 1.19141 0.91089 0.83513 1.43966 0.90806 1.42260 1.05954 0.98924 1.89755 1.19058 0.89451 0.80652 1.00191 1.25238 1.00821 0.99315 0.82141 1.74572 1.09254 1.05642 1.23916 1.74200 1.16166 1.15541 1.07750 1.24625 0.97868 0.95327 0.93120 1.46058 1.33971 1.26669 1.08631 1.22274 0.98818 1.02930 0.77027 1.21902 0.94853 0.98178 1.03299 1.20362 0.88202 0.96097 0.91344 0.89628 1.46286 1.39316 1.16020 1.36185 1.20553 0.82322 0.85870 0.80214 1.90684 1.62612 1.18080 1.70405 1.22824 0.93701 1.01620 0.98021 1.22861 0.93204 1.02586 0.97562 1.22864 0.97169 1.00989 0.96976 1.22794 0.94932 0.99174 0.98609 1.21707 0.98556 0.99528 0.96783 1.20346 0.95482 0.94592 0.95790 0.93317 0.77990 0.92539 0.94562 0.88832 0.86791 0.88648 0.89445 0.76269 0.86886 0.89644 0.90496 0.89869 0.90950 0.91064 0.88727 0.90025 0.90938 0.87882 0.89586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.21 13.06 55.49 0.72 -26.49 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 21.58 29.55 -169.99 -5.02 16.56 16 4 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.25 -6.58 9.99 -15.06 -0.15 -6.73 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.72 -17.78 5.59 -61.09 -0.34 -18.12 16 10 C 0.24 4.73 6.55 -5.19 -0.03 4.69 16 11 C 0.19 3.69 7.45 -155.40 -1.16 2.53 16 12 N -0.29 -6.32 12.24 32.71 0.40 -5.92 16 13 N -0.30 -5.83 12.23 32.84 0.40 -5.43 16 14 C 0.16 2.48 7.03 -155.74 -1.10 1.39 16 15 N -0.46 -7.12 2.72 -109.59 -0.30 -7.42 16 16 C 0.11 1.28 6.48 -3.16 -0.02 1.26 16 17 C -0.14 -1.52 5.09 -27.48 -0.14 -1.66 16 18 C 0.14 1.42 1.95 -70.03 -0.14 1.29 16 19 H 0.09 0.89 6.90 -51.93 -0.36 0.53 16 20 N -0.73 -6.42 4.89 -55.87 -0.27 -6.70 16 21 C 0.52 5.20 7.11 -10.99 -0.08 5.12 16 22 O -0.54 -7.21 15.47 5.56 0.09 -7.12 16 23 C -0.14 -1.02 4.14 -90.96 -0.38 -1.40 16 24 C -0.12 -0.80 7.64 -25.83 -0.20 -1.00 16 25 C -0.14 -0.83 8.09 -25.83 -0.21 -1.04 16 26 C -0.12 -0.86 7.40 -25.92 -0.19 -1.05 16 27 C -0.13 -1.35 5.15 -27.41 -0.14 -1.49 16 28 C -0.02 -0.24 6.01 -26.95 -0.16 -0.41 16 29 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.39 10.34 7.66 -40.82 -0.31 10.03 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.04 0.65 7.28 -51.93 -0.38 0.28 16 33 H 0.09 0.82 7.87 -51.93 -0.41 0.41 16 34 H 0.11 1.32 7.04 -51.93 -0.37 0.95 16 35 H 0.10 0.87 8.12 -51.93 -0.42 0.45 16 36 H 0.09 1.18 8.08 -51.93 -0.42 0.76 16 37 H 0.40 2.96 8.61 -40.82 -0.35 2.61 16 38 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.62 8.09 -51.93 -0.42 0.20 16 40 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 44 H 0.09 0.84 7.45 -51.93 -0.39 0.45 16 45 H 0.08 0.86 7.92 -51.93 -0.41 0.45 16 46 H 0.07 0.90 7.92 -51.93 -0.41 0.49 16 47 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.09 0.82 7.89 -51.93 -0.41 0.41 16 LS Contribution 386.63 15.07 5.83 5.83 Total: -1.00 -34.29 386.63 -10.24 -44.54 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -7.56 Total: 9.07 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -4.19 Total: 1.21 kcal Atomic # 7 Polarization: -70.69 SS G_CDS: 0.61 Total: -70.07 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: 0.09 Total: -7.12 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.29 -10.24 -44.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127931995.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.846 kcal (2) G-P(sol) polarization free energy of solvation -34.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds