Wall clock time and date at job start Tue Mar 31 2020 17:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 119.99963 * 2 1 4 4 H 1.48495 * 109.47132 * 240.00644 * 3 2 1 5 5 H 1.48500 * 109.46878 * 0.02562 * 3 2 1 6 6 H 1.48491 * 109.47252 * 120.00166 * 3 2 1 7 7 C 1.38814 * 120.00168 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99714 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99705 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99673 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46946 * 179.97438 * 10 9 7 12 12 N 1.30969 * 126.61202 * 269.95792 * 11 10 9 13 13 N 1.29032 * 109.70978 * 179.97438 * 12 11 10 14 14 C 1.29919 * 109.21797 * 0.02921 * 13 12 11 15 15 N 1.34578 * 107.61099 * 0.04549 * 14 13 12 16 16 C 1.47507 * 125.00434 * 179.68599 * 15 14 13 17 17 C 1.53632 * 107.07469 * 66.02620 * 16 15 14 18 18 C 1.50858 * 111.13987 * 279.64009 * 17 16 15 19 19 H 1.08995 * 107.99902 * 310.89890 * 18 17 16 20 20 N 1.46506 * 108.02659 * 194.46538 * 18 17 16 21 21 C 1.34774 * 119.99984 * 148.07015 * 20 18 17 22 22 O 1.21282 * 120.00010 * 359.97438 * 21 20 18 23 23 C 1.50698 * 120.00211 * 180.02562 * 21 20 18 24 24 C 1.53780 * 113.61180 * 279.13287 * 23 21 20 25 25 C 1.53952 * 87.02175 * 220.04528 * 24 23 21 26 26 C 1.53773 * 113.61564 * 181.52874 * 23 21 20 27 27 C 1.50953 * 116.58499 * 72.67559 * 18 17 16 28 28 C 1.51882 * 127.77461 * 180.42616 * 14 13 12 29 29 H 0.97006 * 120.00061 * 359.97438 * 1 2 3 30 30 H 0.96993 * 120.00409 * 359.97438 * 9 7 2 31 31 H 1.08994 * 109.47487 * 59.99952 * 10 9 7 32 32 H 1.08999 * 109.46712 * 299.99650 * 10 9 7 33 33 H 1.09006 * 109.93005 * 306.63794 * 16 15 14 34 34 H 1.08993 * 109.93460 * 185.42219 * 16 15 14 35 35 H 1.09003 * 109.14322 * 159.21530 * 17 16 15 36 36 H 1.08999 * 109.14865 * 40.07266 * 17 16 15 37 37 H 0.96996 * 119.99862 * 328.06340 * 20 18 17 38 38 H 1.08997 * 112.84975 * 50.32294 * 23 21 20 39 39 H 1.09005 * 113.61340 * 334.56832 * 24 23 21 40 40 H 1.09006 * 113.61650 * 105.46932 * 24 23 21 41 41 H 1.08996 * 113.53945 * 270.81247 * 25 24 23 42 42 H 1.09005 * 113.74254 * 139.93834 * 25 24 23 43 43 H 1.09009 * 113.61327 * 254.52714 * 26 23 21 44 44 H 1.08997 * 113.61703 * 25.34112 * 26 23 21 45 45 H 1.09000 * 109.18436 * 167.15016 * 27 18 17 46 46 H 1.08994 * 109.19047 * 47.90424 * 27 18 17 47 47 H 1.09002 * 109.96940 * 355.21400 * 28 14 13 48 48 H 1.09002 * 109.96188 * 233.99746 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0581 -3.6567 -0.0016 11 6 1.0788 -4.8022 -0.0022 12 7 0.5715 -5.3966 1.0487 13 7 -0.2313 -6.3344 0.6730 14 6 -0.2654 -6.3735 -0.6251 15 7 0.5580 -5.4127 -1.0832 16 6 0.8128 -5.1249 -2.5073 17 6 -0.5033 -4.6041 -3.1048 18 6 -1.4388 -5.7408 -3.4340 19 1 -0.8787 -6.4846 -4.0007 20 7 -2.4985 -5.2193 -4.3009 21 6 -3.0589 -6.0148 -5.2333 22 8 -2.6856 -7.1623 -5.3552 23 6 -4.1486 -5.4783 -6.1254 24 6 -5.5370 -5.4688 -5.4643 25 6 -6.0982 -5.9277 -6.8224 26 6 -4.7081 -6.5196 -7.1089 27 6 -2.0920 -6.4382 -2.2654 28 6 -1.0766 -7.3071 -1.5067 29 1 -0.4850 0.8401 0.0004 30 1 0.3556 -2.3880 -0.0016 31 1 2.6841 -3.7149 0.8888 32 1 2.6854 -3.7140 -0.8912 33 1 1.1194 -6.0359 -3.0214 34 1 1.5892 -4.3655 -2.5999 35 1 -0.2861 -4.0448 -4.0149 36 1 -0.9849 -3.9415 -2.3856 37 1 -2.7969 -4.3015 -4.2036 38 1 -3.8826 -4.5318 -6.5959 39 1 -5.6488 -6.2099 -4.6727 40 1 -5.8717 -4.4753 -5.1657 41 1 -6.3666 -5.1036 -7.4834 42 1 -6.8842 -6.6786 -6.7414 43 1 -4.3745 -6.3732 -8.1363 44 1 -4.5915 -7.5485 -6.7686 45 1 -2.9008 -7.0703 -2.6321 46 1 -2.5023 -5.6911 -1.5861 47 1 -1.5995 -8.0394 -0.8915 48 1 -0.4204 -7.8155 -2.2132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127931995.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:30 Heat of formation + Delta-G solvation = 48.209762 kcal Electronic energy + Delta-G solvation = -29083.780495 eV Core-core repulsion = 25174.854617 eV Total energy + Delta-G solvation = -3908.925878 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.34815 -41.41758 -39.24181 -37.84779 -36.91790 -35.70093 -34.59558 -33.26861 -32.23818 -30.91464 -28.35719 -27.69051 -26.56538 -26.24864 -25.39066 -24.74022 -22.51655 -22.05946 -21.59940 -21.17713 -20.22546 -19.43347 -18.52521 -18.09127 -17.42995 -17.19378 -16.52106 -16.49691 -16.09229 -15.86164 -15.78111 -15.63843 -15.11384 -15.01785 -14.50666 -14.35733 -14.12109 -13.89261 -13.75989 -13.40279 -13.33271 -13.19320 -12.98079 -12.91394 -12.74328 -12.67654 -12.51593 -12.22821 -12.16176 -12.11881 -11.90904 -11.86379 -11.42433 -11.35915 -11.28778 -11.18104 -10.99442 -10.64084 -10.21970 -10.08249 -9.10561 -7.96199 -5.28556 0.81154 1.49533 1.52167 1.53752 1.59093 1.62058 1.79036 2.12373 2.56933 3.14684 3.34431 3.38380 3.46193 3.55712 3.62392 3.66267 3.75806 3.79781 3.93081 3.94209 4.01480 4.04827 4.17388 4.19138 4.28413 4.30303 4.48595 4.56069 4.64079 4.72008 4.80400 4.80479 4.86212 4.87922 4.98585 5.01778 5.04806 5.07292 5.08562 5.10281 5.19001 5.20280 5.41896 5.49049 5.54601 5.92424 6.20652 6.52906 7.23523 7.29225 7.71965 7.93444 8.21588 9.26645 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011350 B = 0.003042 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.447085 B = 9202.360466 C =10983.454030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.068 4.068 3 Si 0.977 3.023 4 H -0.271 1.271 5 H -0.298 1.298 6 H -0.281 1.281 7 C -0.247 4.247 8 H 0.086 0.914 9 N -0.733 5.733 10 C 0.241 3.759 11 C 0.181 3.819 12 N -0.337 5.337 13 N -0.339 5.339 14 C 0.178 3.822 15 N -0.454 5.454 16 C 0.105 3.895 17 C -0.133 4.133 18 C 0.149 3.851 19 H 0.091 0.909 20 N -0.720 5.720 21 C 0.523 3.477 22 O -0.577 6.577 23 C -0.138 4.138 24 C -0.124 4.124 25 C -0.134 4.134 26 C -0.123 4.123 27 C -0.117 4.117 28 C -0.018 4.018 29 H 0.252 0.748 30 H 0.371 0.629 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.130 0.870 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.055 0.945 37 H 0.411 0.589 38 H 0.134 0.866 39 H 0.073 0.927 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.086 0.914 46 H 0.051 0.949 47 H 0.112 0.888 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.002 -12.949 -18.475 23.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.261 4.261 3 Si 0.805 3.195 4 H -0.196 1.196 5 H -0.225 1.225 6 H -0.207 1.207 7 C -0.378 4.378 8 H 0.104 0.896 9 N -0.377 5.377 10 C 0.112 3.888 11 C -0.089 4.089 12 N -0.177 5.177 13 N -0.178 5.178 14 C -0.092 4.092 15 N -0.144 5.144 16 C -0.016 4.016 17 C -0.172 4.172 18 C 0.044 3.956 19 H 0.109 0.891 20 N -0.371 5.371 21 C 0.311 3.689 22 O -0.456 6.456 23 C -0.159 4.159 24 C -0.162 4.162 25 C -0.171 4.171 26 C -0.161 4.161 27 C -0.157 4.157 28 C -0.058 4.058 29 H 0.060 0.940 30 H 0.203 0.797 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.148 0.852 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.074 0.926 37 H 0.247 0.753 38 H 0.152 0.848 39 H 0.091 0.909 40 H 0.107 0.893 41 H 0.117 0.883 42 H 0.092 0.908 43 H 0.097 0.903 44 H 0.092 0.908 45 H 0.105 0.895 46 H 0.069 0.931 47 H 0.130 0.870 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.841 -13.981 -17.132 23.462 hybrid contribution 0.129 1.818 -0.476 1.884 sum -7.712 -12.163 -17.608 22.747 Atomic orbital electron populations 1.69835 1.06793 1.26256 1.58864 1.25581 0.96297 1.01127 1.03063 0.85173 0.77135 0.78811 0.78354 1.19612 1.22475 1.20734 1.19584 0.91799 0.84307 1.42122 0.89566 1.42378 1.05376 1.00148 1.89801 1.19077 0.89458 0.79241 1.00998 1.24932 1.01337 0.99508 0.83087 1.74451 1.10509 1.06902 1.25831 1.74099 1.17303 1.16324 1.10071 1.25361 0.96497 0.94749 0.92544 1.46216 1.32977 1.25725 1.09505 1.22685 0.99254 1.04837 0.74846 1.21806 0.94357 0.97911 1.03081 1.20246 0.88374 0.95852 0.91079 0.89059 1.46237 1.38837 1.16367 1.35631 1.21014 0.82373 0.85367 0.80182 1.90667 1.63865 1.19618 1.71469 1.22935 0.93008 1.02323 0.97662 1.22860 0.92727 1.02946 0.97624 1.22860 0.96334 1.01336 0.96607 1.22786 0.96183 0.98155 0.98931 1.21612 0.98517 0.99007 0.96533 1.20602 0.95499 0.93977 0.95710 0.93973 0.79716 0.93204 0.91493 0.85233 0.86715 0.86706 0.92616 0.75303 0.84797 0.90864 0.89281 0.88307 0.90752 0.90333 0.90783 0.89515 0.93054 0.86974 0.86738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.56 13.06 21.65 0.28 -57.27 16 2 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 3 Si 0.98 44.18 29.55 68.60 2.03 46.21 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.30 -13.75 7.11 99.48 0.71 -13.05 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 7 C -0.25 -13.08 9.99 84.03 0.84 -12.24 16 8 H 0.09 4.26 7.83 -2.91 -0.02 4.24 16 9 N -0.73 -36.27 5.59 -347.18 -1.94 -38.21 16 10 C 0.24 9.56 6.55 85.63 0.56 10.12 16 11 C 0.18 6.95 7.45 138.12 1.03 7.98 16 12 N -0.34 -14.85 12.24 -50.44 -0.62 -15.47 16 13 N -0.34 -13.50 12.23 -50.00 -0.61 -14.11 16 14 C 0.18 5.44 7.03 138.83 0.98 6.41 16 15 N -0.45 -13.57 2.72 -500.63 -1.36 -14.93 16 16 C 0.11 2.15 6.48 86.40 0.56 2.71 16 17 C -0.13 -2.59 5.09 30.11 0.15 -2.43 16 18 C 0.15 2.65 1.95 43.63 0.08 2.74 16 19 H 0.09 1.62 6.90 -2.39 -0.02 1.60 16 20 N -0.72 -11.49 4.89 -449.06 -2.20 -13.69 16 21 C 0.52 9.56 7.11 87.66 0.62 10.18 16 22 O -0.58 -14.67 15.47 -3.04 -0.05 -14.72 16 23 C -0.14 -1.75 4.14 -11.02 -0.05 -1.80 16 24 C -0.12 -1.39 7.64 31.18 0.24 -1.15 16 25 C -0.13 -1.30 8.09 31.18 0.25 -1.05 16 26 C -0.12 -1.62 7.40 31.12 0.23 -1.39 16 27 C -0.12 -2.35 5.15 30.16 0.16 -2.20 16 28 C -0.02 -0.37 6.01 30.45 0.18 -0.18 16 29 H 0.25 14.57 8.31 -92.70 -0.77 13.80 16 30 H 0.37 20.39 7.66 -92.71 -0.71 19.68 16 31 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.07 2.28 7.28 -2.39 -0.02 2.26 16 33 H 0.13 1.76 7.87 -2.38 -0.02 1.75 16 34 H 0.11 2.38 7.04 -2.39 -0.02 2.36 16 35 H 0.11 1.82 8.12 -2.39 -0.02 1.80 16 36 H 0.06 1.48 8.08 -2.39 -0.02 1.47 16 37 H 0.41 5.36 8.61 -92.71 -0.80 4.56 16 38 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.07 1.00 8.09 -2.38 -0.02 0.99 16 40 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 41 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 43 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 44 H 0.07 1.30 7.45 -2.39 -0.02 1.28 16 45 H 0.09 1.71 7.92 -2.39 -0.02 1.69 16 46 H 0.05 1.26 7.92 -2.39 -0.02 1.24 16 47 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 48 H 0.11 1.78 7.89 -2.39 -0.02 1.76 16 Total: -1.00 -75.90 386.63 1.32 -74.58 By element: Atomic # 1 Polarization: 33.72 SS G_CDS: -0.52 Total: 33.20 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: 6.31 Total: 14.43 kcal Atomic # 7 Polarization: -147.24 SS G_CDS: -6.45 Total: -153.69 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.05 Total: -14.72 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -75.90 1.32 -74.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127931995.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.786 kcal (2) G-P(sol) polarization free energy of solvation -75.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds