Wall clock time and date at job start Tue Mar 31 2020 17:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47266 * 179.97438 * 10 9 7 12 12 N 1.30974 * 126.61655 * 90.02065 * 11 10 9 13 13 N 1.29023 * 109.71087 * 180.02562 * 12 11 10 14 14 C 1.29901 * 109.22484 * 0.04903 * 13 12 11 15 15 N 1.34599 * 107.61512 * 359.59337 * 14 13 12 16 16 C 1.47497 * 125.02851 * 180.11148 * 15 14 13 17 17 C 1.53631 * 107.26248 * 294.47692 * 16 15 14 18 18 C 1.50864 * 111.13165 * 80.25125 * 17 16 15 19 19 H 1.09000 * 108.02762 * 49.14452 * 18 17 16 20 20 N 1.46499 * 108.02844 * 165.55649 * 18 17 16 21 21 C 1.34778 * 120.00331 * 211.93620 * 20 18 17 22 22 O 1.21287 * 119.99819 * 359.97438 * 21 20 18 23 23 C 1.50703 * 120.00228 * 180.02562 * 21 20 18 24 24 C 1.53782 * 113.60929 * 277.49692 * 23 21 20 25 25 C 1.53782 * 87.07748 * 220.01883 * 24 23 21 26 26 C 1.53776 * 113.61242 * 180.02562 * 23 21 20 27 27 C 1.50954 * 116.59026 * 287.35262 * 18 17 16 28 28 C 1.51884 * 127.80454 * 179.74832 * 14 13 12 29 29 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 30 30 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 32 32 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 33 33 H 1.08994 * 109.91897 * 174.98059 * 16 15 14 34 34 H 1.09004 * 109.77131 * 53.88249 * 16 15 14 35 35 H 1.08998 * 109.14493 * 319.83126 * 17 16 15 36 36 H 1.08998 * 109.15167 * 200.67821 * 17 16 15 37 37 H 0.96999 * 120.00032 * 31.94095 * 20 18 17 38 38 H 1.08999 * 112.85045 * 48.79827 * 23 21 20 39 39 H 1.09003 * 113.61402 * 334.56450 * 24 23 21 40 40 H 1.09002 * 113.61617 * 105.46944 * 24 23 21 41 41 H 1.08996 * 113.61580 * 270.88305 * 25 24 23 42 42 H 1.09004 * 113.61492 * 139.98456 * 25 24 23 43 43 H 1.09001 * 113.61030 * 254.52469 * 26 23 21 44 44 H 1.08998 * 113.61781 * 25.34718 * 26 23 21 45 45 H 1.09000 * 109.17787 * 312.11384 * 27 18 17 46 46 H 1.08998 * 109.14449 * 192.84226 * 27 18 17 47 47 H 1.09005 * 109.96794 * 4.52677 * 28 14 13 48 48 H 1.08999 * 109.96745 * 125.83196 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0787 -4.8022 -0.0022 12 7 0.5717 -5.3960 -1.0538 13 7 -0.2311 -6.3339 -0.6791 14 6 -0.2672 -6.3729 0.6188 15 7 0.5614 -5.4169 1.0782 16 6 0.8130 -5.1275 2.5025 17 6 -0.5027 -4.6075 3.1014 18 6 -1.4381 -5.7448 3.4293 19 1 -0.8783 -6.4895 3.9952 20 7 -2.4976 -5.2247 4.2971 21 6 -3.0577 -6.0216 5.2286 22 8 -2.6848 -7.1695 5.3482 23 6 -4.1480 -5.4867 6.1209 24 6 -3.6217 -4.6950 7.3297 25 6 -4.7254 -5.3758 8.1563 26 6 -4.6808 -6.5186 7.1289 27 6 -2.0914 -6.4408 2.2599 28 6 -1.0763 -7.3088 1.4999 29 1 -0.4850 -0.8401 -0.0004 30 1 0.3556 -2.3880 -0.0016 31 1 2.6853 -3.7142 -0.8912 32 1 2.6841 -3.7150 0.8887 33 1 1.5895 -4.3683 2.5956 34 1 1.1200 -6.0391 3.0153 35 1 -0.9846 -3.9439 2.3835 36 1 -0.2851 -4.0497 4.0123 37 1 -2.7961 -4.3068 4.2012 38 1 -4.9328 -4.9708 5.5676 39 1 -2.6131 -4.9778 7.6312 40 1 -3.7495 -3.6167 7.2347 41 1 -5.6681 -4.8286 8.1606 42 1 -4.4030 -5.6732 9.1542 43 1 -5.6639 -6.9129 6.8717 44 1 -3.9621 -7.3004 7.3745 45 1 -2.5016 -5.6926 1.5816 46 1 -2.8999 -7.0733 2.6266 47 1 -1.5995 -8.0404 0.8841 48 1 -0.4189 -7.8168 2.2055 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127931996.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:34 Heat of formation + Delta-G solvation = 70.604162 kcal Electronic energy + Delta-G solvation = -29116.442799 eV Core-core repulsion = 25208.488015 eV Total energy + Delta-G solvation = -3907.954784 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.09125 -40.71690 -38.55769 -37.05015 -35.42420 -34.64176 -33.53379 -31.56230 -31.28627 -29.34205 -27.55018 -26.07231 -25.91389 -25.39864 -24.23703 -22.99427 -21.61835 -21.19980 -20.61183 -20.06131 -19.64415 -17.82821 -17.61469 -17.08317 -16.60373 -16.00528 -15.76388 -15.23881 -15.12034 -14.95376 -14.91210 -14.23593 -13.83786 -13.60783 -13.39509 -13.25020 -13.07893 -12.92707 -12.85185 -12.75435 -12.59790 -12.23358 -12.03443 -11.84105 -11.57189 -11.49356 -11.13382 -10.98713 -10.94650 -10.80104 -10.78824 -10.78341 -10.10672 -10.08528 -10.03229 -9.84051 -9.41848 -9.36658 -9.04080 -8.75168 -7.18219 -6.21863 -3.24220 2.05264 2.33811 2.62590 2.80986 3.14560 3.45697 3.49844 3.66817 4.09050 4.13140 4.18188 4.29449 4.31988 4.40917 4.43297 4.57832 4.59211 4.71094 4.78303 4.84445 4.90484 5.07090 5.12069 5.15503 5.25866 5.28537 5.30109 5.38525 5.44697 5.48695 5.54455 5.56853 5.67372 5.68572 5.68857 5.73063 5.82010 5.92126 6.00483 6.10216 6.17092 6.21784 6.44833 6.49018 7.07107 7.20173 7.66554 7.94141 8.63046 9.04491 9.04967 9.92458 10.06141 11.25739 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010794 B = 0.003130 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.360097 B = 8942.597426 C =11021.909867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.039 4.039 3 Si 1.082 2.918 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.293 1.293 7 C -0.337 4.337 8 H 0.069 0.931 9 N -0.734 5.734 10 C 0.242 3.758 11 C 0.189 3.811 12 N -0.293 5.293 13 N -0.296 5.296 14 C 0.160 3.840 15 N -0.463 5.463 16 C 0.112 3.888 17 C -0.143 4.143 18 C 0.144 3.856 19 H 0.086 0.914 20 N -0.728 5.728 21 C 0.524 3.476 22 O -0.540 6.540 23 C -0.141 4.141 24 C -0.124 4.124 25 C -0.143 4.143 26 C -0.118 4.118 27 C -0.127 4.127 28 C -0.022 4.022 29 H 0.254 0.746 30 H 0.369 0.631 31 H 0.058 0.942 32 H 0.038 0.962 33 H 0.113 0.887 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.403 0.597 38 H 0.113 0.887 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.094 0.906 45 H 0.071 0.929 46 H 0.083 0.917 47 H 0.104 0.896 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.079 -12.678 17.167 22.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.237 4.237 3 Si 0.912 3.088 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.220 1.220 7 C -0.467 4.467 8 H 0.087 0.913 9 N -0.381 5.381 10 C 0.113 3.887 11 C -0.079 4.079 12 N -0.133 5.133 13 N -0.136 5.136 14 C -0.108 4.108 15 N -0.154 5.154 16 C -0.011 4.011 17 C -0.182 4.182 18 C 0.040 3.960 19 H 0.104 0.896 20 N -0.379 5.379 21 C 0.311 3.689 22 O -0.417 6.417 23 C -0.162 4.162 24 C -0.162 4.162 25 C -0.180 4.180 26 C -0.155 4.155 27 C -0.166 4.166 28 C -0.062 4.062 29 H 0.066 0.934 30 H 0.202 0.798 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.132 0.868 34 H 0.113 0.887 35 H 0.103 0.897 36 H 0.114 0.886 37 H 0.237 0.763 38 H 0.131 0.869 39 H 0.103 0.897 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.113 0.887 45 H 0.090 0.910 46 H 0.101 0.899 47 H 0.122 0.878 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.989 -12.172 15.804 21.137 hybrid contribution 0.016 -0.813 1.075 1.348 sum -6.973 -12.985 16.879 22.409 Atomic orbital electron populations 1.70891 1.06092 1.28413 1.52887 1.25838 0.96990 1.01024 0.99893 0.83223 0.74230 0.75366 0.75982 1.20976 1.22164 1.22037 1.19993 0.92126 0.85176 1.49448 0.91326 1.42268 1.04971 0.99930 1.90936 1.18979 0.89315 0.80122 1.00307 1.25269 1.01027 0.99396 0.82225 1.74579 1.09268 1.05580 1.23891 1.74200 1.16131 1.15470 1.07788 1.24666 0.97615 0.95417 0.93102 1.46082 1.33878 1.26781 1.08638 1.22283 0.98815 1.03019 0.76998 1.21898 0.94841 0.98202 1.03232 1.20356 0.88238 0.96067 0.91369 0.89565 1.46285 1.39538 1.15998 1.36044 1.20567 0.82807 0.85737 0.79815 1.90686 1.62997 1.17962 1.70075 1.22832 0.97592 1.00491 0.95287 1.22829 0.99508 0.99653 0.94177 1.22828 0.99066 0.97653 0.98445 1.22795 1.01809 0.96574 0.94354 1.21713 0.98613 0.99548 0.96732 1.20364 0.95513 0.94562 0.95795 0.93448 0.79759 0.92455 0.94467 0.86838 0.88724 0.89733 0.88555 0.76282 0.86881 0.89661 0.90489 0.89820 0.90945 0.91042 0.88704 0.91003 0.89874 0.87784 0.89504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.29 13.70 55.49 0.76 -27.53 16 2 C -0.04 -1.11 5.50 -17.43 -0.10 -1.20 16 3 Si 1.08 25.01 29.92 -169.99 -5.09 19.93 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 6 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.34 -9.15 9.99 -15.06 -0.15 -9.30 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 N -0.73 -18.09 5.59 -61.09 -0.34 -18.44 16 10 C 0.24 4.92 6.55 -5.20 -0.03 4.88 16 11 C 0.19 3.61 7.45 -155.38 -1.16 2.46 16 12 N -0.29 -6.29 12.24 32.71 0.40 -5.89 16 13 N -0.30 -5.79 12.23 32.85 0.40 -5.39 16 14 C 0.16 2.49 7.02 -155.74 -1.09 1.39 16 15 N -0.46 -7.09 2.73 -109.59 -0.30 -7.39 16 16 C 0.11 1.27 6.47 -3.17 -0.02 1.25 16 17 C -0.14 -1.49 5.10 -27.48 -0.14 -1.63 16 18 C 0.14 1.40 1.95 -70.03 -0.14 1.26 16 19 H 0.09 0.88 6.90 -51.93 -0.36 0.52 16 20 N -0.73 -6.33 4.89 -55.86 -0.27 -6.60 16 21 C 0.52 5.14 7.11 -10.98 -0.08 5.06 16 22 O -0.54 -7.14 15.46 5.55 0.09 -7.05 16 23 C -0.14 -1.01 4.15 -90.96 -0.38 -1.39 16 24 C -0.12 -0.77 7.63 -25.92 -0.20 -0.97 16 25 C -0.14 -0.81 8.08 -25.94 -0.21 -1.02 16 26 C -0.12 -0.85 7.40 -25.94 -0.19 -1.04 16 27 C -0.13 -1.34 5.15 -27.41 -0.14 -1.48 16 28 C -0.02 -0.24 6.02 -26.95 -0.16 -0.41 16 29 H 0.25 7.64 6.77 -40.82 -0.28 7.37 16 30 H 0.37 9.64 6.49 -40.82 -0.26 9.37 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.04 0.69 7.28 -51.93 -0.38 0.31 16 33 H 0.11 1.32 7.03 -51.93 -0.37 0.96 16 34 H 0.09 0.82 7.87 -51.93 -0.41 0.42 16 35 H 0.08 1.11 8.09 -51.93 -0.42 0.69 16 36 H 0.10 0.87 8.12 -51.93 -0.42 0.45 16 37 H 0.40 2.90 8.61 -40.82 -0.35 2.55 16 38 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.60 8.09 -51.93 -0.42 0.18 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.09 0.84 7.43 -51.93 -0.39 0.45 16 45 H 0.07 0.88 7.91 -51.93 -0.41 0.47 16 46 H 0.08 0.87 7.91 -51.93 -0.41 0.46 16 47 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.09 0.81 7.89 -51.93 -0.41 0.40 16 LS Contribution 384.89 15.07 5.80 5.80 Total: -1.00 -35.33 384.89 -10.19 -45.51 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -7.45 Total: 9.18 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -4.19 Total: -2.14 kcal Atomic # 7 Polarization: -71.87 SS G_CDS: 0.65 Total: -71.22 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: 0.09 Total: -7.05 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -5.09 Total: 19.93 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.33 -10.19 -45.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127931996.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.117 kcal (2) G-P(sol) polarization free energy of solvation -35.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds