Wall clock time and date at job start Tue Mar 31 2020 17:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47266 * 179.97438 * 10 9 7 12 12 N 1.30974 * 126.61655 * 90.02065 * 11 10 9 13 13 N 1.29023 * 109.71087 * 180.02562 * 12 11 10 14 14 C 1.29901 * 109.22484 * 0.04903 * 13 12 11 15 15 N 1.34599 * 107.61512 * 359.59337 * 14 13 12 16 16 C 1.47497 * 125.02851 * 180.11148 * 15 14 13 17 17 C 1.53631 * 107.26248 * 294.47692 * 16 15 14 18 18 C 1.50864 * 111.13165 * 80.25125 * 17 16 15 19 19 H 1.09000 * 108.02762 * 49.14452 * 18 17 16 20 20 N 1.46499 * 108.02844 * 165.55649 * 18 17 16 21 21 C 1.34778 * 120.00331 * 211.93620 * 20 18 17 22 22 O 1.21287 * 119.99819 * 359.97438 * 21 20 18 23 23 C 1.50703 * 120.00228 * 180.02562 * 21 20 18 24 24 C 1.53782 * 113.60929 * 277.49692 * 23 21 20 25 25 C 1.53782 * 87.07748 * 220.01883 * 24 23 21 26 26 C 1.53776 * 113.61242 * 180.02562 * 23 21 20 27 27 C 1.50954 * 116.59026 * 287.35262 * 18 17 16 28 28 C 1.51884 * 127.80454 * 179.74832 * 14 13 12 29 29 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 30 30 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 32 32 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 33 33 H 1.08994 * 109.91897 * 174.98059 * 16 15 14 34 34 H 1.09004 * 109.77131 * 53.88249 * 16 15 14 35 35 H 1.08998 * 109.14493 * 319.83126 * 17 16 15 36 36 H 1.08998 * 109.15167 * 200.67821 * 17 16 15 37 37 H 0.96999 * 120.00032 * 31.94095 * 20 18 17 38 38 H 1.08999 * 112.85045 * 48.79827 * 23 21 20 39 39 H 1.09003 * 113.61402 * 334.56450 * 24 23 21 40 40 H 1.09002 * 113.61617 * 105.46944 * 24 23 21 41 41 H 1.08996 * 113.61580 * 270.88305 * 25 24 23 42 42 H 1.09004 * 113.61492 * 139.98456 * 25 24 23 43 43 H 1.09001 * 113.61030 * 254.52469 * 26 23 21 44 44 H 1.08998 * 113.61781 * 25.34718 * 26 23 21 45 45 H 1.09000 * 109.17787 * 312.11384 * 27 18 17 46 46 H 1.08998 * 109.14449 * 192.84226 * 27 18 17 47 47 H 1.09005 * 109.96794 * 4.52677 * 28 14 13 48 48 H 1.08999 * 109.96745 * 125.83196 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0787 -4.8022 -0.0022 12 7 0.5717 -5.3960 -1.0538 13 7 -0.2311 -6.3339 -0.6791 14 6 -0.2672 -6.3729 0.6188 15 7 0.5614 -5.4169 1.0782 16 6 0.8130 -5.1275 2.5025 17 6 -0.5027 -4.6075 3.1014 18 6 -1.4381 -5.7448 3.4293 19 1 -0.8783 -6.4895 3.9952 20 7 -2.4976 -5.2247 4.2971 21 6 -3.0577 -6.0216 5.2286 22 8 -2.6848 -7.1695 5.3482 23 6 -4.1480 -5.4867 6.1209 24 6 -3.6217 -4.6950 7.3297 25 6 -4.7254 -5.3758 8.1563 26 6 -4.6808 -6.5186 7.1289 27 6 -2.0914 -6.4408 2.2599 28 6 -1.0763 -7.3088 1.4999 29 1 -0.4850 -0.8401 -0.0004 30 1 0.3556 -2.3880 -0.0016 31 1 2.6853 -3.7142 -0.8912 32 1 2.6841 -3.7150 0.8887 33 1 1.5895 -4.3683 2.5956 34 1 1.1200 -6.0391 3.0153 35 1 -0.9846 -3.9439 2.3835 36 1 -0.2851 -4.0497 4.0123 37 1 -2.7961 -4.3068 4.2012 38 1 -4.9328 -4.9708 5.5676 39 1 -2.6131 -4.9778 7.6312 40 1 -3.7495 -3.6167 7.2347 41 1 -5.6681 -4.8286 8.1606 42 1 -4.4030 -5.6732 9.1542 43 1 -5.6639 -6.9129 6.8717 44 1 -3.9621 -7.3004 7.3745 45 1 -2.5016 -5.6926 1.5816 46 1 -2.8999 -7.0733 2.6266 47 1 -1.5995 -8.0404 0.8841 48 1 -0.4189 -7.8168 2.2055 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127931996.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:33 Heat of formation + Delta-G solvation = 47.688621 kcal Electronic energy + Delta-G solvation = -29117.436491 eV Core-core repulsion = 25208.488015 eV Total energy + Delta-G solvation = -3908.948476 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.43942 -41.45190 -39.29730 -37.88816 -37.22832 -35.80088 -34.70869 -33.28665 -32.30825 -30.85528 -28.36104 -27.51958 -26.58182 -26.28684 -25.43654 -24.92463 -22.61497 -22.11902 -21.67071 -21.23376 -20.24474 -19.56742 -18.60182 -18.23341 -17.52507 -17.29279 -16.81167 -16.49476 -16.11703 -15.93073 -15.73660 -15.69747 -15.13869 -15.06276 -14.64407 -14.53574 -14.25777 -13.97471 -13.81779 -13.48379 -13.38965 -13.22247 -12.91577 -12.80617 -12.76172 -12.63136 -12.56094 -12.25866 -12.15277 -11.94242 -11.88709 -11.46148 -11.43863 -11.39057 -11.30006 -11.24975 -11.00805 -10.68071 -10.27072 -10.14848 -9.23406 -8.42844 -5.40145 0.71576 1.42319 1.58399 1.61289 1.70379 1.71163 1.87022 2.08411 2.71070 3.07266 3.25343 3.37717 3.38845 3.53688 3.54682 3.65799 3.67037 3.77507 3.80569 3.86914 3.92146 3.94273 4.11004 4.12423 4.21986 4.25674 4.42828 4.48182 4.55415 4.69612 4.72018 4.79630 4.80810 4.87092 4.91184 4.94583 4.97802 5.02478 5.03924 5.09104 5.10548 5.18788 5.37887 5.53105 5.54249 5.83353 6.42868 6.49131 6.96028 7.20154 7.62973 7.85333 7.98998 9.07497 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010794 B = 0.003130 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.360097 B = 8942.597426 C =11021.909867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.097 4.097 3 Si 1.130 2.870 4 H -0.295 1.295 5 H -0.270 1.270 6 H -0.281 1.281 7 C -0.335 4.335 8 H 0.078 0.922 9 N -0.744 5.744 10 C 0.247 3.753 11 C 0.177 3.823 12 N -0.335 5.335 13 N -0.337 5.337 14 C 0.180 3.820 15 N -0.454 5.454 16 C 0.105 3.895 17 C -0.133 4.133 18 C 0.149 3.851 19 H 0.092 0.908 20 N -0.720 5.720 21 C 0.523 3.477 22 O -0.576 6.576 23 C -0.140 4.140 24 C -0.121 4.121 25 C -0.134 4.134 26 C -0.123 4.123 27 C -0.118 4.118 28 C -0.018 4.018 29 H 0.240 0.760 30 H 0.358 0.642 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.112 0.888 34 H 0.131 0.869 35 H 0.054 0.946 36 H 0.115 0.885 37 H 0.411 0.589 38 H 0.132 0.868 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.051 0.949 46 H 0.088 0.912 47 H 0.113 0.887 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.685 -12.764 19.402 24.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.289 4.289 3 Si 0.954 3.046 4 H -0.222 1.222 5 H -0.195 1.195 6 H -0.207 1.207 7 C -0.466 4.466 8 H 0.096 0.904 9 N -0.390 5.390 10 C 0.119 3.881 11 C -0.093 4.093 12 N -0.175 5.175 13 N -0.177 5.177 14 C -0.089 4.089 15 N -0.144 5.144 16 C -0.017 4.017 17 C -0.171 4.171 18 C 0.044 3.956 19 H 0.110 0.890 20 N -0.371 5.371 21 C 0.311 3.689 22 O -0.456 6.456 23 C -0.161 4.161 24 C -0.159 4.159 25 C -0.172 4.172 26 C -0.161 4.161 27 C -0.157 4.157 28 C -0.058 4.058 29 H 0.051 0.949 30 H 0.189 0.811 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.131 0.869 34 H 0.149 0.851 35 H 0.073 0.927 36 H 0.133 0.867 37 H 0.247 0.753 38 H 0.149 0.851 39 H 0.094 0.906 40 H 0.108 0.892 41 H 0.116 0.884 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.070 0.930 46 H 0.107 0.893 47 H 0.132 0.868 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.565 -12.281 18.058 22.804 hybrid contribution -0.122 -0.900 0.406 0.995 sum -6.687 -13.181 18.464 23.651 Atomic orbital electron populations 1.71011 1.07332 1.27623 1.55780 1.27264 0.96979 1.04672 0.99958 0.82609 0.73355 0.71275 0.77356 1.22166 1.19523 1.20706 1.20370 0.92709 0.86079 1.47433 0.90429 1.42396 1.04569 1.00999 1.90996 1.18968 0.89368 0.78889 1.00891 1.24899 1.01572 0.99577 0.83227 1.74460 1.10495 1.06823 1.25767 1.74102 1.17243 1.16218 1.10109 1.25414 0.96210 0.94794 0.92520 1.46233 1.32883 1.25830 1.09475 1.22687 0.99275 1.04874 0.74839 1.21807 0.94303 0.97968 1.03034 1.20238 0.88404 0.95806 0.91117 0.89030 1.46233 1.39056 1.16351 1.35478 1.21021 0.82909 0.85231 0.79728 1.90669 1.64243 1.19514 1.71125 1.22942 0.97221 1.00762 0.95150 1.22822 0.99196 1.00315 0.93553 1.22825 0.99509 0.96736 0.98100 1.22791 1.01517 0.96628 0.95203 1.21622 0.98569 0.99051 0.96483 1.20629 0.95538 0.93938 0.95709 0.94943 0.81051 0.93355 0.91648 0.86927 0.85137 0.92733 0.86671 0.75304 0.85065 0.90600 0.89193 0.88382 0.90654 0.90505 0.90682 0.93016 0.89328 0.86827 0.86673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.44 13.70 21.65 0.30 -59.14 16 2 C -0.10 -5.46 5.50 84.86 0.47 -4.99 16 3 Si 1.13 49.79 29.92 68.60 2.05 51.84 16 4 H -0.30 -13.47 7.11 99.48 0.71 -12.76 16 5 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 6 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 7 C -0.34 -18.08 9.99 84.03 0.84 -17.24 16 8 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 9 N -0.74 -37.01 5.59 -347.20 -1.94 -38.95 16 10 C 0.25 10.00 6.55 85.63 0.56 10.56 16 11 C 0.18 6.81 7.45 138.12 1.03 7.83 16 12 N -0.34 -14.74 12.24 -50.43 -0.62 -15.36 16 13 N -0.34 -13.36 12.23 -50.00 -0.61 -13.98 16 14 C 0.18 5.45 7.02 138.82 0.97 6.43 16 15 N -0.45 -13.51 2.73 -500.64 -1.37 -14.88 16 16 C 0.10 2.14 6.47 86.40 0.56 2.69 16 17 C -0.13 -2.54 5.10 30.11 0.15 -2.39 16 18 C 0.15 2.60 1.95 43.63 0.08 2.69 16 19 H 0.09 1.60 6.90 -2.39 -0.02 1.59 16 20 N -0.72 -11.29 4.89 -449.04 -2.20 -13.48 16 21 C 0.52 9.45 7.11 87.66 0.62 10.07 16 22 O -0.58 -14.52 15.46 -3.05 -0.05 -14.57 16 23 C -0.14 -1.75 4.15 -11.01 -0.05 -1.80 16 24 C -0.12 -1.27 7.63 31.12 0.24 -1.03 16 25 C -0.13 -1.26 8.08 31.11 0.25 -1.00 16 26 C -0.12 -1.62 7.40 31.11 0.23 -1.39 16 27 C -0.12 -2.32 5.15 30.16 0.16 -2.16 16 28 C -0.02 -0.37 6.02 30.45 0.18 -0.18 16 29 H 0.24 14.91 6.77 -92.71 -0.63 14.28 16 30 H 0.36 19.24 6.49 -92.71 -0.60 18.64 16 31 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.07 2.30 7.28 -2.39 -0.02 2.28 16 33 H 0.11 2.37 7.03 -2.39 -0.02 2.36 16 34 H 0.13 1.78 7.87 -2.38 -0.02 1.76 16 35 H 0.05 1.42 8.09 -2.39 -0.02 1.40 16 36 H 0.12 1.81 8.12 -2.39 -0.02 1.79 16 37 H 0.41 5.23 8.61 -92.71 -0.80 4.43 16 38 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.08 0.95 8.09 -2.39 -0.02 0.93 16 40 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 43 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.07 1.30 7.43 -2.39 -0.02 1.28 16 45 H 0.05 1.24 7.91 -2.39 -0.02 1.22 16 46 H 0.09 1.71 7.91 -2.39 -0.02 1.69 16 47 H 0.11 2.14 8.14 -2.38 -0.02 2.12 16 48 H 0.12 1.75 7.89 -2.39 -0.02 1.73 16 Total: -1.00 -78.26 384.89 1.60 -76.66 By element: Atomic # 1 Polarization: 34.05 SS G_CDS: -0.27 Total: 33.79 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 6.30 Total: 8.09 kcal Atomic # 7 Polarization: -149.36 SS G_CDS: -6.44 Total: -155.80 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.05 Total: -14.57 kcal Atomic # 14 Polarization: 49.79 SS G_CDS: 2.05 Total: 51.84 kcal Total: -78.26 1.60 -76.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127931996.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.345 kcal (2) G-P(sol) polarization free energy of solvation -78.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds