Wall clock time and date at job start Tue Mar 31 2020 17:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99829 * 2 1 4 4 H 1.48501 * 109.46688 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47319 * 299.99777 * 3 2 1 6 6 H 1.48493 * 109.47245 * 60.00467 * 3 2 1 7 7 C 1.38808 * 119.99841 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00055 * 164.45333 * 7 2 1 9 9 N 1.36942 * 120.00071 * 344.45276 * 7 2 1 10 10 C 1.47081 * 121.00908 * 155.89541 * 9 7 2 11 11 C 1.53259 * 109.21553 * 116.44334 * 10 9 7 12 12 N 1.46554 * 109.24296 * 45.98428 * 11 10 9 13 13 N 1.39744 * 127.32479 * 161.53034 * 12 11 10 14 14 C 1.31013 * 108.17919 * 179.18929 * 13 12 11 15 15 C 1.40077 * 108.24960 * 0.59732 * 14 13 12 16 16 C 1.50705 * 126.12053 * 179.85362 * 15 14 13 17 17 N 1.46497 * 109.47425 * 259.69232 * 16 15 14 18 18 C 1.34768 * 120.00053 * 179.97438 * 17 16 15 19 19 O 1.21282 * 120.00039 * 0.02562 * 18 17 16 20 20 C 1.50699 * 120.00143 * 180.27437 * 18 17 16 21 21 N 1.46900 * 109.47411 * 179.72437 * 20 18 17 22 22 C 1.48536 * 110.99735 * 52.61091 * 21 20 18 23 23 C 1.54935 * 103.22790 * 159.71965 * 22 21 20 24 24 C 1.54596 * 102.91912 * 322.58343 * 23 22 21 25 25 C 1.47902 * 110.99803 * 170.00162 * 21 20 18 26 26 C 1.34635 * 107.75376 * 359.59742 * 15 14 13 27 27 C 1.47498 * 121.00814 * 335.91636 * 9 7 2 28 28 H 0.97003 * 120.00043 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.51094 * 236.36206 * 10 9 7 30 30 H 1.08995 * 109.52054 * 356.51808 * 10 9 7 31 31 H 1.08999 * 109.51262 * 165.91327 * 11 10 9 32 32 H 1.08995 * 109.51069 * 286.05347 * 11 10 9 33 33 H 1.07994 * 125.87593 * 180.42413 * 14 13 12 34 34 H 1.08999 * 109.46712 * 139.69508 * 16 15 14 35 35 H 1.09002 * 109.47043 * 19.70185 * 16 15 14 36 36 H 0.97001 * 119.99583 * 0.02562 * 17 16 15 37 37 H 1.08994 * 109.47771 * 299.73019 * 20 18 17 38 38 H 1.09004 * 109.46706 * 59.72924 * 20 18 17 39 39 H 1.09002 * 110.66454 * 278.15665 * 22 21 20 40 40 H 1.09003 * 110.67073 * 41.27936 * 22 21 20 41 41 H 1.09000 * 110.72314 * 204.22558 * 23 22 21 42 42 H 1.09002 * 110.72630 * 80.94457 * 23 22 21 43 43 H 1.09003 * 110.30913 * 263.03853 * 24 23 22 44 44 H 1.08999 * 110.38675 * 140.92131 * 24 23 22 45 45 H 1.08993 * 109.92272 * 333.50998 * 25 21 20 46 46 H 1.09000 * 109.91590 * 94.61341 * 25 21 20 47 47 H 1.09002 * 109.94238 * 103.53045 * 27 9 7 48 48 H 1.09000 * 109.94946 * 342.27609 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0605 -1.2192 -0.2512 9 7 1.3630 -2.3665 0.3168 10 6 1.8637 -3.6654 -0.1581 11 6 2.2727 -4.5195 1.0469 12 7 1.2231 -4.4492 2.0673 13 7 1.0190 -5.3276 3.1348 14 6 -0.0125 -4.9030 3.8220 15 6 -0.5056 -3.7468 3.2038 16 6 -1.6882 -2.9312 3.6594 17 7 -2.8592 -3.2736 2.8485 18 6 -4.0395 -2.6651 3.0786 19 8 -4.1320 -1.8336 3.9567 20 6 -5.2456 -3.0218 2.2486 21 7 -6.3997 -2.2310 2.6967 22 6 -6.0748 -0.7819 2.7210 23 6 -7.4683 -0.1055 2.6851 24 6 -8.2730 -1.0222 1.7353 25 6 -7.5357 -2.3739 1.7605 26 6 0.2694 -3.4915 2.1329 27 6 0.1425 -2.3561 1.1449 28 1 -0.4850 0.8401 -0.0004 29 1 1.0792 -4.1758 -0.7167 30 1 2.7280 -3.5087 -0.8034 31 1 2.4049 -5.5545 0.7315 32 1 3.2080 -4.1419 1.4601 33 1 -0.4152 -5.3664 4.7105 34 1 -1.4640 -1.8707 3.5443 35 1 -1.8961 -3.1469 4.7075 36 1 -2.7852 -3.9389 2.1465 37 1 -5.0421 -2.8054 1.2000 38 1 -5.4654 -4.0831 2.3645 39 1 -5.5445 -0.5219 3.6371 40 1 -5.4895 -0.5040 1.8445 41 1 -7.3969 0.9034 2.2787 42 1 -7.9160 -0.0914 3.6788 43 1 -8.2760 -0.6115 0.7256 44 1 -9.2942 -1.1413 2.0975 45 1 -7.1672 -2.6144 0.7633 46 1 -8.2066 -3.1597 2.1078 47 1 -0.7349 -2.5069 0.5158 48 1 0.0617 -1.4079 1.6764 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128580571.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:11 Heat of formation + Delta-G solvation = 80.627317 kcal Electronic energy + Delta-G solvation = -29219.200582 eV Core-core repulsion = 25311.680435 eV Total energy + Delta-G solvation = -3907.520147 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.01486 -39.83815 -38.03460 -36.33967 -34.74132 -33.02954 -32.37391 -31.26766 -30.24835 -29.00915 -28.81850 -26.87266 -25.84008 -24.44653 -23.47248 -21.80518 -21.33015 -20.87298 -20.27114 -20.03026 -18.42918 -17.06162 -16.75757 -16.29637 -16.12481 -15.64664 -15.36366 -15.26912 -14.94192 -14.60131 -14.01360 -13.91831 -13.71596 -13.60230 -13.35477 -13.19173 -13.05751 -12.70039 -12.47428 -12.26354 -12.19462 -11.74039 -11.65365 -11.53896 -11.36741 -11.30139 -11.02189 -10.95513 -10.89643 -10.75141 -10.63465 -10.20972 -10.19877 -10.11180 -9.46061 -8.94310 -8.73932 -8.57995 -8.41919 -7.94240 -7.12027 -6.05258 -3.47821 2.39640 2.88676 2.90350 2.99359 3.26368 3.34946 3.36199 3.60095 4.10764 4.28497 4.62263 4.69068 4.88768 4.93105 5.02385 5.03940 5.17864 5.26220 5.29384 5.32483 5.35324 5.48790 5.52294 5.54634 5.58988 5.64007 5.69888 5.73745 5.82111 5.84347 5.96938 6.12596 6.13912 6.19437 6.29583 6.35312 6.38337 6.52523 6.76792 6.85987 6.87767 6.89658 7.06786 7.11321 7.54401 7.57937 7.81027 8.05700 8.21251 8.51204 8.88498 9.50920 10.03321 11.05730 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009899 B = 0.003608 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2827.759649 B = 7759.069711 C = 9765.842925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.009 3.991 3 Si 0.908 3.092 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.286 1.286 7 C -0.263 4.263 8 H 0.074 0.926 9 N -0.597 5.597 10 C 0.129 3.871 11 C 0.114 3.886 12 N -0.358 5.358 13 N -0.318 5.318 14 C 0.056 3.944 15 C -0.288 4.288 16 C 0.212 3.788 17 N -0.719 5.719 18 C 0.513 3.487 19 O -0.532 6.532 20 C 0.025 3.975 21 N -0.502 5.502 22 C 0.030 3.970 23 C -0.126 4.126 24 C -0.131 4.131 25 C 0.033 3.967 26 C 0.119 3.881 27 C 0.232 3.768 28 H 0.259 0.741 29 H 0.036 0.964 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.176 0.824 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.399 0.601 37 H 0.066 0.934 38 H 0.102 0.898 39 H 0.114 0.886 40 H 0.041 0.959 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.044 0.956 46 H 0.078 0.922 47 H 0.055 0.945 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.468 -7.049 2.102 12.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.737 3.263 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.212 1.212 7 C -0.392 4.392 8 H 0.092 0.908 9 N -0.319 5.319 10 C 0.001 3.999 11 C -0.010 4.010 12 N -0.139 5.139 13 N -0.138 5.138 14 C -0.130 4.130 15 C -0.300 4.300 16 C 0.088 3.912 17 N -0.371 5.371 18 C 0.298 3.702 19 O -0.409 6.409 20 C -0.106 4.106 21 N -0.226 5.226 22 C -0.097 4.097 23 C -0.164 4.164 24 C -0.169 4.169 25 C -0.095 4.095 26 C -0.013 4.013 27 C 0.105 3.895 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.193 0.807 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.232 0.768 37 H 0.083 0.917 38 H 0.120 0.880 39 H 0.132 0.868 40 H 0.059 0.941 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.063 0.937 46 H 0.096 0.904 47 H 0.073 0.927 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.685 -7.401 3.028 12.559 hybrid contribution 0.199 1.176 -1.172 1.672 sum -9.486 -6.225 1.856 11.497 Atomic orbital electron populations 1.69948 1.05252 1.26141 1.53366 1.25030 0.95454 0.98593 0.99991 0.86141 0.79265 0.83334 0.77534 1.20144 1.21449 1.21211 1.19207 0.92507 0.83899 1.43592 0.90809 1.44217 1.29247 1.01392 1.57080 1.21272 0.99260 0.87371 0.92032 1.22546 0.88756 1.01504 0.88202 1.48501 1.24035 1.19474 1.21914 1.77171 1.20115 1.16512 0.99993 1.23682 0.94507 0.95300 0.99536 1.19438 1.05115 1.03415 1.02044 1.19285 0.80475 0.97855 0.93577 1.46172 1.09445 1.43330 1.38107 1.20345 0.83981 0.81380 0.84448 1.90623 1.84532 1.32714 1.33005 1.22233 0.90278 1.00482 0.97612 1.64697 1.04379 1.07917 1.45634 1.23548 0.96378 0.86434 1.03361 1.22526 0.95703 0.98304 0.99886 1.22390 0.99507 0.95065 0.99967 1.22926 0.93588 0.98279 0.94659 1.22576 0.88517 0.92852 0.97340 1.19905 0.89232 0.92243 0.88125 0.93130 0.94635 0.89714 0.90187 0.90585 0.80735 0.90942 0.91340 0.76780 0.91658 0.88007 0.86849 0.94090 0.91208 0.90878 0.91614 0.91187 0.93745 0.90372 0.92696 0.87331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.26 11.07 55.49 0.61 -23.65 16 2 C 0.01 0.22 5.00 -17.43 -0.09 0.14 16 3 Si 0.91 20.63 29.58 -169.99 -5.03 15.60 16 4 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.26 -6.66 9.67 -15.06 -0.15 -6.80 16 8 H 0.07 1.82 7.88 -52.49 -0.41 1.40 16 9 N -0.60 -13.68 3.01 -172.97 -0.52 -14.20 16 10 C 0.13 2.37 6.49 -3.59 -0.02 2.34 16 11 C 0.11 1.90 7.44 -3.88 -0.03 1.87 16 12 N -0.36 -6.77 4.03 -56.93 -0.23 -7.00 16 13 N -0.32 -5.80 12.61 30.70 0.39 -5.41 16 14 C 0.06 0.91 11.97 -17.21 -0.21 0.70 16 15 C -0.29 -4.90 5.46 -105.21 -0.57 -5.47 16 16 C 0.21 3.35 5.95 -5.19 -0.03 3.32 16 17 N -0.72 -10.19 5.55 -61.47 -0.34 -10.53 16 18 C 0.51 7.66 7.54 -10.99 -0.08 7.57 16 19 O -0.53 -9.65 13.52 5.56 0.08 -9.58 16 20 C 0.03 0.31 5.52 -4.98 -0.03 0.28 16 21 N -0.50 -6.40 5.26 -231.89 -1.22 -7.62 16 22 C 0.03 0.40 5.30 -1.90 -0.01 0.39 16 23 C -0.13 -1.36 7.06 -24.87 -0.18 -1.54 16 24 C -0.13 -1.22 6.93 -25.37 -0.18 -1.40 16 25 C 0.03 0.34 6.69 -2.75 -0.02 0.32 16 26 C 0.12 2.31 6.71 -82.16 -0.55 1.76 16 27 C 0.23 5.12 5.11 -4.48 -0.02 5.10 16 28 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.43 7.94 -51.93 -0.41 1.02 16 31 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.18 2.19 8.06 -52.49 -0.42 1.77 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.40 5.04 8.46 -40.82 -0.35 4.69 16 37 H 0.07 0.74 7.81 -51.93 -0.41 0.33 16 38 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.11 1.82 5.97 -51.93 -0.31 1.51 16 40 H 0.04 0.59 8.02 -51.93 -0.42 0.17 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.04 0.42 7.57 -51.93 -0.39 0.03 16 46 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 48 H 0.11 2.72 6.46 -51.93 -0.34 2.39 16 LS Contribution 382.99 15.07 5.77 5.77 Total: -1.00 -30.18 382.99 -10.32 -40.50 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -7.66 Total: 7.53 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: -2.16 Total: 8.59 kcal Atomic # 7 Polarization: -67.11 SS G_CDS: -1.31 Total: -68.42 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.08 Total: -9.58 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.18 -10.32 -40.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128580571.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.122 kcal (2) G-P(sol) polarization free energy of solvation -30.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds