Wall clock time and date at job start Tue Mar 31 2020 17:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99829 * 2 1 4 4 H 1.48501 * 109.46688 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47319 * 299.99777 * 3 2 1 6 6 H 1.48493 * 109.47245 * 60.00467 * 3 2 1 7 7 C 1.38808 * 119.99841 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00055 * 164.45333 * 7 2 1 9 9 N 1.36942 * 120.00071 * 344.45276 * 7 2 1 10 10 C 1.47081 * 121.00908 * 155.89541 * 9 7 2 11 11 C 1.53259 * 109.21553 * 116.44334 * 10 9 7 12 12 N 1.46554 * 109.24296 * 45.98428 * 11 10 9 13 13 N 1.39744 * 127.32479 * 161.53034 * 12 11 10 14 14 C 1.31013 * 108.17919 * 179.18929 * 13 12 11 15 15 C 1.40077 * 108.24960 * 0.59732 * 14 13 12 16 16 C 1.50705 * 126.12053 * 179.85362 * 15 14 13 17 17 N 1.46497 * 109.47425 * 259.69232 * 16 15 14 18 18 C 1.34768 * 120.00053 * 179.97438 * 17 16 15 19 19 O 1.21282 * 120.00039 * 0.02562 * 18 17 16 20 20 C 1.50699 * 120.00143 * 180.27437 * 18 17 16 21 21 N 1.46900 * 109.47411 * 179.72437 * 20 18 17 22 22 C 1.48536 * 110.99735 * 52.61091 * 21 20 18 23 23 C 1.54935 * 103.22790 * 159.71965 * 22 21 20 24 24 C 1.54596 * 102.91912 * 322.58343 * 23 22 21 25 25 C 1.47902 * 110.99803 * 170.00162 * 21 20 18 26 26 C 1.34635 * 107.75376 * 359.59742 * 15 14 13 27 27 C 1.47498 * 121.00814 * 335.91636 * 9 7 2 28 28 H 0.97003 * 120.00043 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.51094 * 236.36206 * 10 9 7 30 30 H 1.08995 * 109.52054 * 356.51808 * 10 9 7 31 31 H 1.08999 * 109.51262 * 165.91327 * 11 10 9 32 32 H 1.08995 * 109.51069 * 286.05347 * 11 10 9 33 33 H 1.07994 * 125.87593 * 180.42413 * 14 13 12 34 34 H 1.08999 * 109.46712 * 139.69508 * 16 15 14 35 35 H 1.09002 * 109.47043 * 19.70185 * 16 15 14 36 36 H 0.97001 * 119.99583 * 0.02562 * 17 16 15 37 37 H 1.08994 * 109.47771 * 299.73019 * 20 18 17 38 38 H 1.09004 * 109.46706 * 59.72924 * 20 18 17 39 39 H 1.09002 * 110.66454 * 278.15665 * 22 21 20 40 40 H 1.09003 * 110.67073 * 41.27936 * 22 21 20 41 41 H 1.09000 * 110.72314 * 204.22558 * 23 22 21 42 42 H 1.09002 * 110.72630 * 80.94457 * 23 22 21 43 43 H 1.09003 * 110.30913 * 263.03853 * 24 23 22 44 44 H 1.08999 * 110.38675 * 140.92131 * 24 23 22 45 45 H 1.08993 * 109.92272 * 333.50998 * 25 21 20 46 46 H 1.09000 * 109.91590 * 94.61341 * 25 21 20 47 47 H 1.09002 * 109.94238 * 103.53045 * 27 9 7 48 48 H 1.09000 * 109.94946 * 342.27609 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0605 -1.2192 -0.2512 9 7 1.3630 -2.3665 0.3168 10 6 1.8637 -3.6654 -0.1581 11 6 2.2727 -4.5195 1.0469 12 7 1.2231 -4.4492 2.0673 13 7 1.0190 -5.3276 3.1348 14 6 -0.0125 -4.9030 3.8220 15 6 -0.5056 -3.7468 3.2038 16 6 -1.6882 -2.9312 3.6594 17 7 -2.8592 -3.2736 2.8485 18 6 -4.0395 -2.6651 3.0786 19 8 -4.1320 -1.8336 3.9567 20 6 -5.2456 -3.0218 2.2486 21 7 -6.3997 -2.2310 2.6967 22 6 -6.0748 -0.7819 2.7210 23 6 -7.4683 -0.1055 2.6851 24 6 -8.2730 -1.0222 1.7353 25 6 -7.5357 -2.3739 1.7605 26 6 0.2694 -3.4915 2.1329 27 6 0.1425 -2.3561 1.1449 28 1 -0.4850 0.8401 -0.0004 29 1 1.0792 -4.1758 -0.7167 30 1 2.7280 -3.5087 -0.8034 31 1 2.4049 -5.5545 0.7315 32 1 3.2080 -4.1419 1.4601 33 1 -0.4152 -5.3664 4.7105 34 1 -1.4640 -1.8707 3.5443 35 1 -1.8961 -3.1469 4.7075 36 1 -2.7852 -3.9389 2.1465 37 1 -5.0421 -2.8054 1.2000 38 1 -5.4654 -4.0831 2.3645 39 1 -5.5445 -0.5219 3.6371 40 1 -5.4895 -0.5040 1.8445 41 1 -7.3969 0.9034 2.2787 42 1 -7.9160 -0.0914 3.6788 43 1 -8.2760 -0.6115 0.7256 44 1 -9.2942 -1.1413 2.0975 45 1 -7.1672 -2.6144 0.7633 46 1 -8.2066 -3.1597 2.1078 47 1 -0.7349 -2.5069 0.5158 48 1 0.0617 -1.4079 1.6764 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128580571.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:10 Heat of formation + Delta-G solvation = 59.485111 kcal Electronic energy + Delta-G solvation = -29220.117377 eV Core-core repulsion = 25311.680435 eV Total energy + Delta-G solvation = -3908.436942 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.43860 -40.97075 -39.06296 -37.97946 -36.07530 -34.64759 -33.40465 -32.80071 -31.83314 -30.41497 -29.71224 -28.18243 -27.42098 -25.79102 -25.06862 -23.32930 -22.35259 -21.68386 -21.60979 -21.30599 -19.96763 -18.56046 -18.25954 -17.57278 -17.30601 -16.84077 -16.70379 -16.50313 -16.30692 -16.00331 -15.51642 -15.30535 -15.02382 -14.95566 -14.78397 -14.55493 -14.18593 -14.01748 -13.85489 -13.38414 -13.29852 -13.09754 -13.07041 -12.96871 -12.77738 -12.63018 -12.44762 -12.33664 -12.19233 -12.05094 -11.91361 -11.87931 -11.62112 -11.43821 -10.81178 -10.67282 -10.07509 -10.00067 -9.42869 -9.35806 -8.97026 -8.01115 -5.44407 0.92172 1.43207 1.47188 1.54742 1.58039 1.64791 1.70669 2.41991 2.44286 3.12233 3.18563 3.41648 3.60155 3.73803 3.78883 3.82484 3.99873 4.11608 4.16262 4.19262 4.23506 4.32960 4.36583 4.37238 4.43573 4.47740 4.67323 4.75508 4.77531 4.78753 4.86427 4.92927 4.95992 5.00385 5.01236 5.13635 5.22860 5.23309 5.31925 5.35327 5.55204 5.57130 5.75203 5.87041 5.98585 6.08340 6.18379 6.64991 6.79654 6.97320 7.33383 7.63589 8.14502 9.08278 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009899 B = 0.003608 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2827.759649 B = 7759.069711 C = 9765.842925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.041 4.041 3 Si 0.964 3.036 4 H -0.265 1.265 5 H -0.290 1.290 6 H -0.295 1.295 7 C -0.267 4.267 8 H 0.079 0.921 9 N -0.616 5.616 10 C 0.128 3.872 11 C 0.117 3.883 12 N -0.367 5.367 13 N -0.326 5.326 14 C 0.067 3.933 15 C -0.274 4.274 16 C 0.219 3.781 17 N -0.711 5.711 18 C 0.508 3.492 19 O -0.568 6.568 20 C 0.031 3.969 21 N -0.515 5.515 22 C 0.029 3.971 23 C -0.123 4.123 24 C -0.127 4.127 25 C 0.031 3.969 26 C 0.095 3.905 27 C 0.251 3.749 28 H 0.252 0.748 29 H 0.041 0.959 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.076 0.924 33 H 0.215 0.785 34 H 0.040 0.960 35 H 0.082 0.918 36 H 0.408 0.592 37 H 0.074 0.926 38 H 0.131 0.869 39 H 0.082 0.918 40 H 0.023 0.977 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.087 0.913 45 H 0.052 0.948 46 H 0.093 0.907 47 H 0.035 0.965 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.858 -9.059 2.098 14.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.237 4.237 3 Si 0.792 3.208 4 H -0.189 1.189 5 H -0.217 1.217 6 H -0.222 1.222 7 C -0.396 4.396 8 H 0.097 0.903 9 N -0.340 5.340 10 C 0.001 3.999 11 C -0.006 4.006 12 N -0.149 5.149 13 N -0.146 5.146 14 C -0.119 4.119 15 C -0.286 4.286 16 C 0.095 3.905 17 N -0.363 5.363 18 C 0.295 3.705 19 O -0.448 6.448 20 C -0.100 4.100 21 N -0.240 5.240 22 C -0.098 4.098 23 C -0.161 4.161 24 C -0.165 4.165 25 C -0.096 4.096 26 C -0.036 4.036 27 C 0.124 3.876 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.118 0.882 31 H 0.130 0.870 32 H 0.094 0.906 33 H 0.231 0.769 34 H 0.059 0.941 35 H 0.101 0.899 36 H 0.243 0.757 37 H 0.091 0.909 38 H 0.149 0.851 39 H 0.101 0.899 40 H 0.042 0.958 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.106 0.894 45 H 0.070 0.930 46 H 0.112 0.888 47 H 0.053 0.947 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.049 -9.461 2.993 14.123 hybrid contribution 0.338 1.738 -1.139 2.105 sum -9.711 -7.723 1.854 12.546 Atomic orbital electron populations 1.70090 1.06420 1.26070 1.55045 1.25693 0.96089 1.01255 1.00704 0.85263 0.78801 0.80024 0.76709 1.18874 1.21656 1.22213 1.19530 0.92907 0.84974 1.42184 0.90285 1.44449 1.29306 1.02500 1.57718 1.21437 0.99778 0.85513 0.93125 1.22537 0.88081 1.02891 0.87061 1.48689 1.24189 1.19381 1.22592 1.77166 1.20883 1.16553 1.00028 1.24249 0.93334 0.94353 0.99978 1.19538 1.04604 1.03455 1.01024 1.19104 0.80904 0.95916 0.94573 1.46058 1.08862 1.43338 1.38048 1.20950 0.84760 0.80571 0.84199 1.90622 1.85153 1.34204 1.34780 1.22276 0.88770 1.01906 0.97087 1.64694 1.05191 1.07073 1.47062 1.23386 0.97585 0.87889 1.00967 1.22509 0.94182 0.98843 1.00602 1.22407 0.99969 0.94113 0.99999 1.23039 0.92810 0.99213 0.94539 1.22205 0.90355 0.92989 0.98085 1.19327 0.88581 0.91670 0.88021 0.93905 0.94109 0.88246 0.86951 0.90562 0.76873 0.94115 0.89949 0.75682 0.90867 0.85114 0.89935 0.95812 0.90566 0.90811 0.90811 0.89428 0.92962 0.88834 0.94743 0.91139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.03 11.07 21.65 0.24 -51.79 16 2 C -0.04 -2.18 5.00 84.86 0.42 -1.75 16 3 Si 0.96 43.21 29.58 68.60 2.03 45.24 16 4 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 5 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 6 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 7 C -0.27 -13.60 9.67 84.03 0.81 -12.79 16 8 H 0.08 3.86 7.88 -2.91 -0.02 3.84 16 9 N -0.62 -28.56 3.01 -701.16 -2.11 -30.67 16 10 C 0.13 4.58 6.49 86.36 0.56 5.14 16 11 C 0.12 3.69 7.44 86.46 0.64 4.34 16 12 N -0.37 -13.33 4.03 -334.04 -1.35 -14.67 16 13 N -0.33 -11.09 12.61 -56.80 -0.72 -11.81 16 14 C 0.07 1.99 11.97 85.26 1.02 3.01 16 15 C -0.27 -9.11 5.46 -20.24 -0.11 -9.22 16 16 C 0.22 7.02 5.95 85.64 0.51 7.53 16 17 N -0.71 -20.16 5.55 -466.80 -2.59 -22.75 16 18 C 0.51 15.33 7.54 87.66 0.66 15.99 16 19 O -0.57 -21.44 13.52 -3.04 -0.04 -21.48 16 20 C 0.03 0.71 5.52 85.56 0.47 1.18 16 21 N -0.52 -12.77 5.26 -887.57 -4.67 -17.44 16 22 C 0.03 0.82 5.30 86.65 0.46 1.28 16 23 C -0.12 -2.61 7.06 31.80 0.22 -2.38 16 24 C -0.13 -2.12 6.93 31.47 0.22 -1.90 16 25 C 0.03 0.57 6.69 86.45 0.58 1.15 16 26 C 0.10 3.69 6.71 41.30 0.28 3.97 16 27 C 0.25 11.50 5.11 85.55 0.44 11.94 16 28 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 29 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.10 3.21 7.94 -2.39 -0.02 3.19 16 31 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 32 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.21 4.48 8.06 -2.91 -0.02 4.46 16 34 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.41 10.05 8.46 -92.71 -0.78 9.26 16 37 H 0.07 1.59 7.81 -2.39 -0.02 1.57 16 38 H 0.13 2.25 8.14 -2.38 -0.02 2.23 16 39 H 0.08 2.83 5.97 -2.39 -0.01 2.81 16 40 H 0.02 0.72 8.02 -2.39 -0.02 0.70 16 41 H 0.08 1.48 8.14 -2.39 -0.02 1.47 16 42 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.05 0.87 7.57 -2.39 -0.02 0.86 16 46 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.03 1.68 8.14 -2.39 -0.02 1.67 16 48 H 0.07 3.75 6.46 -2.39 -0.02 3.74 16 Total: -1.00 -67.09 382.99 -1.84 -68.92 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: 0.18 Total: 28.99 kcal Atomic # 6 Polarization: 20.28 SS G_CDS: 7.19 Total: 27.47 kcal Atomic # 7 Polarization: -137.94 SS G_CDS: -11.19 Total: -149.14 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.04 Total: -21.48 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -67.09 -1.84 -68.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128580571.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.408 kcal (2) G-P(sol) polarization free energy of solvation -67.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds