Wall clock time and date at job start Tue Mar 31 2020 18:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48500 * 109.47132 * 239.99832 * 3 2 1 5 5 H 1.48496 * 109.47128 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47063 * 120.00016 * 3 2 1 7 7 C 1.38811 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00053 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00398 * 359.97438 * 7 2 1 10 10 C 1.47144 * 125.58305 * 359.97438 * 9 7 2 11 11 C 1.54605 * 107.36262 * 179.09493 * 10 9 7 12 12 C 1.53654 * 102.73195 * 339.24918 * 11 10 9 13 13 C 1.52375 * 116.39618 * 162.91767 * 12 11 10 14 14 N 1.47892 * 85.73257 * 141.28147 * 13 12 11 15 15 C 1.34778 * 134.34311 * 156.54358 * 14 13 12 16 16 O 1.21281 * 120.00053 * 359.97438 * 15 14 13 17 17 C 1.50694 * 119.99973 * 180.02562 * 15 14 13 18 18 C 1.53005 * 109.47181 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.47340 * 179.97438 * 18 17 15 20 20 C 1.52995 * 109.47265 * 179.97438 * 19 18 17 21 21 C 1.50706 * 109.47356 * 180.02562 * 20 19 18 22 22 C 1.35354 * 126.90845 * 274.68773 * 21 20 19 23 23 N 1.33767 * 106.49461 * 179.90358 * 22 21 20 24 24 N 1.28633 * 108.88604 * 0.36459 * 23 22 21 25 25 N 1.28716 * 110.17671 * 359.76536 * 24 23 22 26 26 H 0.97008 * 125.86510 * 180.02562 * 25 24 23 27 27 C 1.48161 * 91.20739 * 336.62471 * 14 13 12 28 28 C 1.47719 * 125.59057 * 180.02562 * 9 7 2 29 29 H 0.96999 * 119.99806 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.86591 * 59.65409 * 10 9 7 31 31 H 1.08997 * 109.98007 * 298.60467 * 10 9 7 32 32 H 1.08994 * 110.76175 * 220.93482 * 11 10 9 33 33 H 1.09004 * 110.75453 * 97.55729 * 11 10 9 34 34 H 1.09002 * 113.85294 * 255.51254 * 13 12 11 35 35 H 1.08998 * 113.85571 * 27.05613 * 13 12 11 36 36 H 1.09001 * 109.47514 * 300.00014 * 17 15 14 37 37 H 1.09003 * 109.47495 * 60.00146 * 17 15 14 38 38 H 1.09004 * 109.46908 * 299.99860 * 18 17 15 39 39 H 1.08994 * 109.46983 * 59.99847 * 18 17 15 40 40 H 1.09000 * 109.47225 * 300.00592 * 19 18 17 41 41 H 1.09008 * 109.46984 * 59.99839 * 19 18 17 42 42 H 1.09004 * 109.47039 * 299.99976 * 20 19 18 43 43 H 1.08994 * 109.46928 * 60.00010 * 20 19 18 44 44 H 1.08002 * 126.75060 * 0.03065 * 22 21 20 45 45 H 1.08997 * 113.74300 * 269.19877 * 27 14 13 46 46 H 1.09006 * 114.04347 * 137.58154 * 27 14 13 47 47 H 1.09004 * 110.40181 * 83.64022 * 28 9 7 48 48 H 1.09001 * 110.40025 * 321.22907 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1388 -2.5313 0.0028 11 6 -0.4544 -4.0446 -0.0196 12 6 0.8472 -4.6540 -0.5630 13 6 1.0383 -6.1497 -0.3436 14 7 1.6248 -6.1619 -1.7011 15 6 2.4829 -6.9743 -2.3494 16 8 2.9404 -7.9462 -1.7865 17 6 2.8747 -6.6743 -3.7732 18 6 3.8517 -7.7422 -4.2692 19 6 4.2491 -7.4380 -5.7150 20 6 5.2266 -8.5056 -6.2107 21 6 5.6185 -8.2056 -7.6346 22 6 4.9500 -8.5664 -8.7549 23 7 5.6541 -8.0897 -9.7875 24 7 6.6940 -7.4812 -9.3368 25 7 6.7122 -7.5265 -8.0506 26 1 7.3931 -7.1398 -7.4779 27 6 0.8943 -4.9244 -2.0618 28 6 1.9361 -3.7332 0.0028 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5585 -2.0523 -0.8817 31 1 -0.5565 -2.0790 0.9023 32 1 -1.2886 -4.2555 -0.6887 33 1 -0.6622 -4.4108 0.9859 34 1 1.7495 -6.3921 0.4461 35 1 0.1045 -6.7061 -0.2619 36 1 1.9849 -6.6749 -4.4028 37 1 3.3523 -5.6956 -3.8202 38 1 4.7415 -7.7411 -3.6395 39 1 3.3746 -8.7211 -4.2221 40 1 3.3591 -7.4393 -6.3443 41 1 4.7261 -6.4590 -5.7624 42 1 6.1165 -8.5037 -5.5812 43 1 4.7500 -9.4846 -6.1632 44 1 4.0281 -9.1269 -8.8051 45 1 -0.0835 -5.1061 -2.5079 46 1 1.4908 -4.2036 -2.6212 47 1 2.1962 -4.0316 1.0184 48 1 2.8185 -3.7506 -0.6369 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147986665.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:11 Heat of formation + Delta-G solvation = 105.088045 kcal Electronic energy + Delta-G solvation = -27702.182106 eV Core-core repulsion = 23795.722656 eV Total energy + Delta-G solvation = -3906.459450 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.66380 -40.56050 -38.53865 -36.26075 -35.58842 -33.72988 -32.73147 -32.24554 -30.11758 -29.31911 -28.25493 -26.29169 -26.06406 -24.94678 -23.54579 -23.31098 -22.13280 -21.42897 -20.34393 -19.22756 -18.56724 -18.28069 -17.08813 -16.67363 -16.40208 -16.22124 -15.86835 -15.30973 -14.91396 -14.79859 -14.67163 -14.39030 -14.03603 -13.81568 -13.31190 -13.01608 -12.95483 -12.51618 -12.38638 -12.29300 -11.92424 -11.87847 -11.84553 -11.66542 -11.54840 -11.20773 -11.12737 -10.98092 -10.97030 -10.90252 -10.80088 -10.45851 -10.26693 -10.17098 -9.91990 -9.72304 -9.58575 -9.45184 -8.65505 -8.57558 -6.90339 -5.77342 -3.11078 1.16753 2.18661 2.35516 2.69926 2.87891 3.36112 3.40954 3.41882 3.96327 4.21536 4.35803 4.44269 4.49445 4.51404 4.65518 4.74090 4.92430 4.98472 5.01529 5.09102 5.14731 5.16603 5.28862 5.42122 5.44197 5.47365 5.48756 5.58167 5.62505 5.68459 5.70152 5.75110 5.77649 5.89988 5.92682 6.05171 6.11358 6.17070 6.41014 6.43330 6.46684 6.60865 6.66278 7.49075 7.54682 7.76211 7.80936 8.07551 8.19053 8.21801 9.15888 9.75543 10.41009 11.34113 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011859 B = 0.002129 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.587692 B =13147.661180 C =14879.090238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.229 4.229 8 H 0.076 0.924 9 N -0.605 5.605 10 C 0.178 3.822 11 C -0.132 4.132 12 C -0.104 4.104 13 C 0.121 3.879 14 N -0.642 5.642 15 C 0.533 3.467 16 O -0.554 6.554 17 C -0.136 4.136 18 C -0.102 4.102 19 C -0.117 4.117 20 C -0.049 4.049 21 C -0.004 4.004 22 C -0.049 4.049 23 N -0.266 5.266 24 N -0.085 5.085 25 N -0.390 5.390 26 H 0.448 0.552 27 C 0.122 3.878 28 C 0.162 3.838 29 H 0.253 0.747 30 H 0.047 0.953 31 H 0.043 0.957 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.191 0.809 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.024 0.976 48 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.104 -17.002 -10.037 20.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.358 4.358 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.054 3.946 11 C -0.171 4.171 12 C -0.106 4.106 13 C -0.002 4.002 14 N -0.377 5.377 15 C 0.323 3.677 16 O -0.433 6.433 17 C -0.176 4.176 18 C -0.140 4.140 19 C -0.155 4.155 20 C -0.089 4.089 21 C -0.138 4.138 22 C -0.207 4.207 23 N -0.133 5.133 24 N -0.065 5.065 25 N -0.111 5.111 26 H 0.293 0.707 27 C 0.000 4.000 28 C 0.036 3.964 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.099 0.901 43 H 0.116 0.884 44 H 0.208 0.792 45 H 0.103 0.897 46 H 0.105 0.895 47 H 0.042 0.958 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 6.070 -16.956 -11.247 21.233 hybrid contribution 0.219 0.898 1.337 1.625 sum 6.289 -16.058 -9.910 19.890 Atomic orbital electron populations 1.69945 1.04841 1.25199 1.56921 1.24790 0.95727 0.97634 1.02171 0.86207 0.78472 0.83204 0.77908 1.21194 1.21575 1.21174 1.18984 0.90374 0.82350 1.44049 0.90583 1.44552 1.01627 0.99639 1.87320 1.21205 0.84223 0.87935 1.01251 1.22679 0.94692 0.99695 1.00003 1.22459 0.99681 0.93576 0.94887 1.22974 0.97475 0.95139 0.84591 1.50345 1.43906 1.27382 1.16080 1.20338 0.78172 0.81207 0.87990 1.90675 1.55351 1.28322 1.68903 1.21607 1.01268 1.01498 0.93221 1.21322 0.99396 0.98743 0.94548 1.21640 0.99130 0.98163 0.96552 1.20220 1.00530 1.01041 0.87090 1.22405 0.90738 1.01442 0.99224 1.23449 1.03297 1.06211 0.87702 1.75106 1.00901 1.10106 1.27234 1.78313 1.17740 1.19572 0.90902 1.45162 1.19887 1.38544 1.07512 0.70684 1.23101 0.95930 0.83649 0.97348 1.21033 0.93002 0.85440 0.96909 0.93666 0.93465 0.93837 0.91730 0.91716 0.90165 0.89889 0.89035 0.88901 0.90988 0.90867 0.90946 0.91677 0.90111 0.88401 0.79239 0.89683 0.89483 0.95795 0.94312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.00 10.30 55.49 0.57 -25.42 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 3 Si 0.91 21.45 29.55 -169.99 -5.02 16.42 16 4 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.23 -6.12 10.28 -15.06 -0.15 -6.27 16 8 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.60 -14.47 3.41 -170.49 -0.58 -15.05 16 10 C 0.18 3.98 5.39 -2.85 -0.02 3.97 16 11 C -0.13 -2.14 6.36 -25.55 -0.16 -2.30 16 12 C -0.10 -1.60 0.99 -154.80 -0.15 -1.75 16 13 C 0.12 1.62 8.20 -3.60 -0.03 1.60 16 14 N -0.64 -8.74 3.63 -185.45 -0.67 -9.41 16 15 C 0.53 7.28 8.06 -10.99 -0.09 7.19 16 16 O -0.55 -9.35 16.71 5.56 0.09 -9.25 16 17 C -0.14 -1.29 5.45 -27.88 -0.15 -1.44 16 18 C -0.10 -0.80 4.50 -26.73 -0.12 -0.92 16 19 C -0.12 -0.65 5.20 -26.73 -0.14 -0.79 16 20 C -0.05 -0.22 5.78 -27.88 -0.16 -0.38 16 21 C 0.00 -0.03 6.56 -82.09 -0.54 -0.56 16 22 C -0.05 -0.40 11.99 -17.74 -0.21 -0.62 16 23 N -0.27 -3.02 12.41 30.24 0.38 -2.65 16 24 N -0.09 -0.90 13.38 60.35 0.81 -0.09 16 25 N -0.39 -2.70 6.98 33.54 0.23 -2.47 16 26 H 0.45 1.54 8.96 -190.39 -1.71 -0.17 16 27 C 0.12 1.61 7.94 -3.45 -0.03 1.59 16 28 C 0.16 3.13 6.63 -3.16 -0.02 3.11 16 29 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.05 1.17 7.38 -51.93 -0.38 0.78 16 31 H 0.04 1.10 7.49 -51.93 -0.39 0.71 16 32 H 0.06 0.91 7.99 -51.93 -0.41 0.49 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.08 1.12 8.12 -51.93 -0.42 0.69 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 39 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 42 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.19 1.00 8.06 -52.49 -0.42 0.58 16 45 H 0.09 0.97 8.04 -51.93 -0.42 0.55 16 46 H 0.09 1.21 8.12 -51.93 -0.42 0.79 16 47 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.04 0.75 8.07 -51.93 -0.42 0.34 16 LS Contribution 394.36 15.07 5.94 5.94 Total: -1.00 -34.29 394.36 -9.51 -43.81 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -9.19 Total: -3.97 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -2.07 Total: 2.14 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: 0.73 Total: -55.09 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.09 Total: -9.25 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.29 -9.51 -43.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147986665.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.893 kcal (2) G-P(sol) polarization free energy of solvation -34.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds