Wall clock time and date at job start Tue Mar 31 2020 18:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48500 * 109.47132 * 239.99832 * 3 2 1 5 5 H 1.48496 * 109.47128 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47063 * 120.00016 * 3 2 1 7 7 C 1.38811 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00053 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00398 * 359.97438 * 7 2 1 10 10 C 1.47144 * 125.58305 * 359.97438 * 9 7 2 11 11 C 1.54605 * 107.36262 * 179.09493 * 10 9 7 12 12 C 1.53654 * 102.73195 * 339.24918 * 11 10 9 13 13 C 1.52375 * 116.39618 * 162.91767 * 12 11 10 14 14 N 1.47892 * 85.73257 * 141.28147 * 13 12 11 15 15 C 1.34778 * 134.34311 * 156.54358 * 14 13 12 16 16 O 1.21281 * 120.00053 * 359.97438 * 15 14 13 17 17 C 1.50694 * 119.99973 * 180.02562 * 15 14 13 18 18 C 1.53005 * 109.47181 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.47340 * 179.97438 * 18 17 15 20 20 C 1.52995 * 109.47265 * 179.97438 * 19 18 17 21 21 C 1.50706 * 109.47356 * 180.02562 * 20 19 18 22 22 C 1.35354 * 126.90845 * 274.68773 * 21 20 19 23 23 N 1.33767 * 106.49461 * 179.90358 * 22 21 20 24 24 N 1.28633 * 108.88604 * 0.36459 * 23 22 21 25 25 N 1.28716 * 110.17671 * 359.76536 * 24 23 22 26 26 H 0.97008 * 125.86510 * 180.02562 * 25 24 23 27 27 C 1.48161 * 91.20739 * 336.62471 * 14 13 12 28 28 C 1.47719 * 125.59057 * 180.02562 * 9 7 2 29 29 H 0.96999 * 119.99806 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.86591 * 59.65409 * 10 9 7 31 31 H 1.08997 * 109.98007 * 298.60467 * 10 9 7 32 32 H 1.08994 * 110.76175 * 220.93482 * 11 10 9 33 33 H 1.09004 * 110.75453 * 97.55729 * 11 10 9 34 34 H 1.09002 * 113.85294 * 255.51254 * 13 12 11 35 35 H 1.08998 * 113.85571 * 27.05613 * 13 12 11 36 36 H 1.09001 * 109.47514 * 300.00014 * 17 15 14 37 37 H 1.09003 * 109.47495 * 60.00146 * 17 15 14 38 38 H 1.09004 * 109.46908 * 299.99860 * 18 17 15 39 39 H 1.08994 * 109.46983 * 59.99847 * 18 17 15 40 40 H 1.09000 * 109.47225 * 300.00592 * 19 18 17 41 41 H 1.09008 * 109.46984 * 59.99839 * 19 18 17 42 42 H 1.09004 * 109.47039 * 299.99976 * 20 19 18 43 43 H 1.08994 * 109.46928 * 60.00010 * 20 19 18 44 44 H 1.08002 * 126.75060 * 0.03065 * 22 21 20 45 45 H 1.08997 * 113.74300 * 269.19877 * 27 14 13 46 46 H 1.09006 * 114.04347 * 137.58154 * 27 14 13 47 47 H 1.09004 * 110.40181 * 83.64022 * 28 9 7 48 48 H 1.09001 * 110.40025 * 321.22907 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1388 -2.5313 0.0028 11 6 -0.4544 -4.0446 -0.0196 12 6 0.8472 -4.6540 -0.5630 13 6 1.0383 -6.1497 -0.3436 14 7 1.6248 -6.1619 -1.7011 15 6 2.4829 -6.9743 -2.3494 16 8 2.9404 -7.9462 -1.7865 17 6 2.8747 -6.6743 -3.7732 18 6 3.8517 -7.7422 -4.2692 19 6 4.2491 -7.4380 -5.7150 20 6 5.2266 -8.5056 -6.2107 21 6 5.6185 -8.2056 -7.6346 22 6 4.9500 -8.5664 -8.7549 23 7 5.6541 -8.0897 -9.7875 24 7 6.6940 -7.4812 -9.3368 25 7 6.7122 -7.5265 -8.0506 26 1 7.3931 -7.1398 -7.4779 27 6 0.8943 -4.9244 -2.0618 28 6 1.9361 -3.7332 0.0028 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5585 -2.0523 -0.8817 31 1 -0.5565 -2.0790 0.9023 32 1 -1.2886 -4.2555 -0.6887 33 1 -0.6622 -4.4108 0.9859 34 1 1.7495 -6.3921 0.4461 35 1 0.1045 -6.7061 -0.2619 36 1 1.9849 -6.6749 -4.4028 37 1 3.3523 -5.6956 -3.8202 38 1 4.7415 -7.7411 -3.6395 39 1 3.3746 -8.7211 -4.2221 40 1 3.3591 -7.4393 -6.3443 41 1 4.7261 -6.4590 -5.7624 42 1 6.1165 -8.5037 -5.5812 43 1 4.7500 -9.4846 -6.1632 44 1 4.0281 -9.1269 -8.8051 45 1 -0.0835 -5.1061 -2.5079 46 1 1.4908 -4.2036 -2.6212 47 1 2.1962 -4.0316 1.0184 48 1 2.8185 -3.7506 -0.6369 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147986665.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:10 Heat of formation + Delta-G solvation = 82.311374 kcal Electronic energy + Delta-G solvation = -27703.169777 eV Core-core repulsion = 23795.722656 eV Total energy + Delta-G solvation = -3907.447121 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.26783 -41.72829 -39.68926 -37.25945 -36.73718 -34.36715 -34.09714 -33.33664 -31.48920 -30.46105 -29.42837 -27.60179 -27.29658 -26.02894 -24.87133 -23.96407 -22.77088 -22.10933 -21.92612 -20.35484 -19.51180 -19.12630 -18.79041 -17.78784 -17.11118 -17.03854 -16.97876 -16.63592 -16.15621 -15.85020 -15.57962 -15.41899 -15.32545 -14.86208 -14.24978 -14.15248 -13.93302 -13.72717 -13.54903 -13.47099 -13.19706 -13.02874 -12.85741 -12.74235 -12.54956 -12.41130 -12.25891 -12.10353 -12.06234 -11.92489 -11.80721 -11.70633 -11.64697 -11.59194 -11.42754 -11.26145 -10.70724 -10.63123 -10.10316 -9.66632 -8.86879 -7.83096 -5.17800 0.59741 1.47128 1.49013 1.55369 1.55426 1.67877 1.85400 1.92145 2.50077 3.28623 3.36082 3.47046 3.59277 3.68803 3.75476 3.80108 3.94741 4.02089 4.15002 4.17559 4.22091 4.38249 4.44868 4.51497 4.57050 4.58860 4.62990 4.66600 4.75699 4.78478 4.80261 4.85625 4.95555 4.97372 5.00928 5.11436 5.14375 5.14908 5.23362 5.25167 5.36944 5.47333 5.49345 5.74105 5.83966 5.99970 6.22870 6.76222 7.13627 7.17855 7.44421 7.79939 8.43658 9.26370 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011859 B = 0.002129 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.587692 B =13147.661180 C =14879.090238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.062 4.062 3 Si 0.973 3.027 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.281 1.281 7 C -0.241 4.241 8 H 0.077 0.923 9 N -0.624 5.624 10 C 0.184 3.816 11 C -0.113 4.113 12 C -0.100 4.100 13 C 0.126 3.874 14 N -0.645 5.645 15 C 0.526 3.474 16 O -0.590 6.590 17 C -0.132 4.132 18 C -0.095 4.095 19 C -0.108 4.108 20 C -0.043 4.043 21 C 0.011 3.989 22 C -0.061 4.061 23 N -0.306 5.306 24 N -0.120 5.120 25 N -0.379 5.379 26 H 0.461 0.539 27 C 0.131 3.869 28 C 0.160 3.840 29 H 0.247 0.753 30 H 0.017 0.983 31 H 0.003 0.997 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.093 0.907 43 H 0.113 0.887 44 H 0.214 0.786 45 H 0.115 0.885 46 H 0.079 0.921 47 H 0.020 0.980 48 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.963 -18.453 -10.530 21.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.255 4.255 3 Si 0.802 3.198 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.207 1.207 7 C -0.370 4.370 8 H 0.095 0.905 9 N -0.351 5.351 10 C 0.059 3.941 11 C -0.152 4.152 12 C -0.101 4.101 13 C 0.004 3.996 14 N -0.379 5.379 15 C 0.318 3.682 16 O -0.472 6.472 17 C -0.171 4.171 18 C -0.134 4.134 19 C -0.146 4.146 20 C -0.083 4.083 21 C -0.125 4.125 22 C -0.219 4.219 23 N -0.172 5.172 24 N -0.100 5.100 25 N -0.102 5.102 26 H 0.309 0.691 27 C 0.009 3.991 28 C 0.034 3.966 29 H 0.056 0.944 30 H 0.035 0.965 31 H 0.021 0.979 32 H 0.114 0.886 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.115 0.885 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.112 0.888 43 H 0.131 0.869 44 H 0.230 0.770 45 H 0.133 0.867 46 H 0.098 0.902 47 H 0.038 0.962 48 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 5.966 -18.413 -11.748 22.642 hybrid contribution 0.284 1.335 1.604 2.106 sum 6.250 -17.078 -10.144 20.824 Atomic orbital electron populations 1.70160 1.06036 1.25258 1.58151 1.25558 0.96587 1.00676 1.02715 0.85233 0.77214 0.79257 0.78106 1.20291 1.22071 1.20732 1.19334 0.90801 0.83821 1.43074 0.90521 1.44833 1.02617 1.00623 1.87026 1.20996 0.83241 0.91964 0.97870 1.22523 0.96105 0.94740 1.01804 1.22294 0.97151 0.94076 0.96623 1.22993 0.98594 0.93409 0.84627 1.50408 1.43981 1.27425 1.16132 1.21062 0.77328 0.80493 0.89276 1.90658 1.56517 1.29937 1.70063 1.21683 1.02545 1.02123 0.90775 1.21253 0.98452 0.98098 0.95548 1.21539 0.99617 0.98362 0.95100 1.20273 1.00976 1.01347 0.85685 1.22683 0.89908 1.00087 0.99772 1.23973 1.04098 1.06344 0.87482 1.75055 1.01830 1.11344 1.28983 1.78249 1.18308 1.21006 0.92411 1.45216 1.20258 1.37816 1.06874 0.69078 1.23135 0.97190 0.83171 0.95615 1.21130 0.94168 0.84374 0.96883 0.94405 0.96465 0.97863 0.88639 0.90448 0.90893 0.87077 0.86950 0.88452 0.92162 0.91140 0.90306 0.91813 0.88819 0.86917 0.76979 0.86680 0.90250 0.96186 0.94754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.91 10.30 21.65 0.22 -54.69 16 2 C -0.06 -3.42 5.49 84.86 0.47 -2.96 16 3 Si 0.97 44.59 29.55 68.60 2.03 46.62 16 4 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 5 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.24 -13.06 10.28 84.03 0.86 -12.20 16 8 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 9 N -0.62 -30.23 3.41 -693.30 -2.36 -32.59 16 10 C 0.18 8.33 5.39 86.80 0.47 8.80 16 11 C -0.11 -3.43 6.36 31.36 0.20 -3.23 16 12 C -0.10 -2.84 0.99 -52.16 -0.05 -2.89 16 13 C 0.13 3.04 8.20 85.91 0.70 3.74 16 14 N -0.64 -15.83 3.63 -859.04 -3.12 -18.95 16 15 C 0.53 13.24 8.06 87.65 0.71 13.94 16 16 O -0.59 -19.04 16.71 -3.03 -0.05 -19.09 16 17 C -0.13 -2.14 5.45 29.85 0.16 -1.98 16 18 C -0.10 -1.26 4.50 30.59 0.14 -1.12 16 19 C -0.11 -0.89 5.20 30.59 0.16 -0.73 16 20 C -0.04 -0.26 5.78 29.85 0.17 -0.09 16 21 C 0.01 0.12 6.56 41.36 0.27 0.39 16 22 C -0.06 -0.90 11.99 83.73 1.00 0.10 16 23 N -0.31 -6.84 12.41 -58.26 -0.72 -7.56 16 24 N -0.12 -2.50 13.38 37.02 0.50 -2.01 16 25 N -0.38 -4.76 6.98 -47.79 -0.33 -5.09 16 26 H 0.46 2.52 8.96 -219.95 -1.97 0.54 16 27 C 0.13 3.07 7.94 85.85 0.68 3.75 16 28 C 0.16 6.08 6.63 86.29 0.57 6.65 16 29 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 30 H 0.02 0.87 7.38 -2.39 -0.02 0.85 16 31 H 0.00 0.16 7.49 -2.39 -0.02 0.14 16 32 H 0.10 2.35 7.99 -2.39 -0.02 2.33 16 33 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.07 1.89 8.12 -2.39 -0.02 1.87 16 35 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.06 0.94 8.10 -2.39 -0.02 0.92 16 39 H 0.07 0.99 8.10 -2.39 -0.02 0.97 16 40 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 42 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 43 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.21 1.79 8.06 -2.91 -0.02 1.77 16 45 H 0.12 2.10 8.04 -2.39 -0.02 2.08 16 46 H 0.08 2.03 8.12 -2.38 -0.02 2.01 16 47 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 48 H 0.03 1.32 8.07 -2.39 -0.02 1.30 16 Total: -1.00 -77.28 394.36 1.66 -75.62 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -1.01 Total: 5.56 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: 6.52 Total: 12.18 kcal Atomic # 7 Polarization: -115.06 SS G_CDS: -5.82 Total: -120.88 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.05 Total: -19.09 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -77.28 1.66 -75.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147986665.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.927 kcal (2) G-P(sol) polarization free energy of solvation -77.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds