Wall clock time and date at job start Tue Mar 31 2020 18:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00196 * 2 1 4 4 H 1.48499 * 109.47250 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46691 * 299.99755 * 3 2 1 6 6 H 1.48495 * 109.47518 * 59.99459 * 3 2 1 7 7 C 1.37883 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99980 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99833 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47303 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47212 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.47016 * 180.02562 * 11 10 9 13 13 C 1.38283 * 119.99781 * 180.02562 * 12 11 10 14 14 C 1.37726 * 120.00972 * 180.02562 * 13 12 11 15 15 C 1.51139 * 132.49120 * 0.04261 * 14 13 12 16 16 C 1.54083 * 103.32263 * 179.89197 * 15 14 13 17 17 N 1.46931 * 104.69141 * 0.12917 * 16 15 14 18 18 C 1.31280 * 111.57344 * 359.85959 * 17 16 15 19 19 N 1.39000 * 129.94813 * 180.11769 * 18 17 16 20 20 C 1.36174 * 119.74437 * 179.97438 * 19 18 17 21 21 N 1.36973 * 119.12460 * 179.97438 * 20 19 18 22 22 C 1.47159 * 120.98481 * 5.31932 * 21 20 19 23 23 C 1.53710 * 108.16282 * 129.42845 * 22 21 20 24 24 O 1.42961 * 109.14587 * 52.54386 * 23 22 21 25 25 C 1.42966 * 114.16293 * 297.28337 * 24 23 22 26 26 C 1.47148 * 120.98341 * 185.60132 * 21 20 19 27 27 N 1.31419 * 121.75040 * 359.97438 * 20 19 18 28 28 H 0.97000 * 120.00241 * 0.02562 * 1 2 3 29 29 H 1.09011 * 109.47110 * 59.99609 * 9 7 2 30 30 H 1.09001 * 109.47187 * 300.00268 * 9 7 2 31 31 H 1.08998 * 109.46756 * 60.00333 * 10 9 7 32 32 H 1.08998 * 109.47121 * 300.00377 * 10 9 7 33 33 H 1.08998 * 109.47027 * 60.00451 * 11 10 9 34 34 H 1.08998 * 109.47347 * 300.00191 * 11 10 9 35 35 H 0.96999 * 119.99518 * 359.97438 * 12 11 10 36 36 H 1.08999 * 110.67460 * 298.39976 * 15 14 13 37 37 H 1.09000 * 110.67646 * 61.38260 * 15 14 13 38 38 H 1.09002 * 110.35292 * 118.93696 * 16 15 14 39 39 H 1.09001 * 110.35298 * 241.22956 * 16 15 14 40 40 H 0.96999 * 120.13357 * 359.97438 * 19 18 17 41 41 H 1.08993 * 109.67926 * 249.21482 * 22 21 20 42 42 H 1.09001 * 109.67340 * 9.76172 * 22 21 20 43 43 H 1.08996 * 109.65918 * 292.57221 * 23 22 21 44 44 H 1.09005 * 109.48085 * 172.39649 * 23 22 21 45 45 H 1.09001 * 109.51423 * 302.65840 * 25 24 23 46 46 H 1.09008 * 109.54989 * 182.52791 * 25 24 23 47 47 H 1.08997 * 109.68134 * 350.23131 * 26 21 20 48 48 H 1.08994 * 109.68526 * 110.79065 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0005 11 6 1.4802 -4.9871 -0.0001 12 7 2.4322 -6.1007 0.0005 13 6 1.9712 -7.4044 -0.0005 14 6 2.8660 -8.4514 0.0007 15 6 4.3765 -8.5035 0.0037 16 6 4.6797 -10.0142 0.0061 17 7 3.3595 -10.6592 0.0011 18 6 2.3899 -9.7742 -0.0007 19 7 1.0123 -9.9596 -0.0031 20 6 0.1850 -8.8780 -0.0040 21 7 -1.1704 -9.0753 -0.0069 22 6 -1.7393 -10.4276 0.1080 23 6 -2.7973 -10.4092 1.2229 24 8 -3.7244 -9.3503 0.9721 25 6 -3.1410 -8.0452 0.9900 26 6 -2.1007 -7.9420 -0.1312 27 7 0.6526 -7.6498 -0.0023 28 1 -0.4850 0.8400 -0.0004 29 1 0.6246 -2.5571 -0.8897 30 1 0.6240 -2.5567 0.8903 31 1 2.8718 -3.6044 0.8906 32 1 2.8719 -3.6044 -0.8894 33 1 0.8539 -5.0446 -0.8904 34 1 0.8532 -5.0451 0.8896 35 1 3.3859 -5.9234 0.0008 36 1 4.7797 -8.0314 -0.8922 37 1 4.7761 -8.0292 0.9001 38 1 5.2409 -10.2897 -0.8868 39 1 5.2347 -10.2881 0.9034 40 1 0.6416 -10.8560 -0.0040 41 1 -2.2023 -10.7126 -0.8367 42 1 -0.9511 -11.1372 0.3599 43 1 -2.3125 -10.2483 2.1858 44 1 -3.3274 -11.3615 1.2368 45 1 -2.6574 -7.8757 1.9521 46 1 -3.9178 -7.2962 0.8359 47 1 -1.5520 -7.0048 -0.0377 48 1 -2.5995 -7.9810 -1.0995 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157637909.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:06 Heat of formation + Delta-G solvation = 39.493094 kcal Electronic energy + Delta-G solvation = -28648.587847 eV Core-core repulsion = 24739.283987 eV Total energy + Delta-G solvation = -3909.303861 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.43623 -39.74976 -37.57957 -37.11171 -35.02729 -34.31655 -33.02945 -31.93633 -31.09802 -29.36753 -29.27953 -27.36711 -26.40334 -24.88137 -23.64260 -23.23313 -22.13891 -21.31397 -20.75361 -20.34646 -18.62470 -17.72915 -17.45167 -16.68287 -16.31749 -16.25323 -16.00272 -15.55466 -15.47169 -15.09803 -14.94129 -14.72641 -14.52521 -14.33952 -13.99418 -13.82473 -13.02745 -12.59971 -12.52308 -12.30467 -12.16939 -11.97532 -11.92215 -11.75899 -11.66584 -11.32415 -11.12958 -11.07775 -10.80891 -10.73688 -10.56193 -10.32590 -9.94378 -9.82354 -9.52198 -9.24574 -9.11312 -8.86978 -8.44501 -8.39483 -6.77228 -6.04634 -4.07002 1.19981 1.67858 2.19688 2.73153 3.28383 3.31476 3.36098 3.39557 3.45025 3.78482 4.09507 4.24049 4.42501 4.45110 4.57100 4.65523 4.70837 4.79552 4.90601 5.10720 5.12147 5.19402 5.31337 5.31665 5.37865 5.42941 5.51539 5.54174 5.71756 5.79477 5.89546 5.91745 6.14874 6.19617 6.22209 6.26137 6.35555 6.60130 6.60978 6.65582 6.77191 6.95886 7.04351 7.37908 7.59131 7.61041 7.73717 7.94547 8.03412 8.28478 8.36712 8.99729 9.57382 11.06687 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009856 B = 0.002922 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.197236 B = 9579.857403 C =12283.111579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.027 3.973 10 C -0.124 4.124 11 C 0.127 3.873 12 N -0.702 5.702 13 C 0.496 3.504 14 C -0.421 4.421 15 C -0.062 4.062 16 C 0.063 3.937 17 N -0.621 5.621 18 C 0.428 3.572 19 N -0.639 5.639 20 C 0.674 3.326 21 N -0.597 5.597 22 C 0.079 3.921 23 C 0.050 3.950 24 O -0.378 6.378 25 C 0.045 3.955 26 C 0.095 3.905 27 N -0.614 5.614 28 H 0.260 0.740 29 H 0.018 0.982 30 H 0.018 0.982 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.410 0.590 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.407 0.593 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.060 0.940 44 H 0.110 0.890 45 H 0.061 0.939 46 H 0.114 0.886 47 H 0.121 0.879 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.740 -23.486 1.061 23.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.162 4.162 11 C 0.003 3.997 12 N -0.329 5.329 13 C 0.267 3.733 14 C -0.441 4.441 15 C -0.102 4.102 16 C -0.068 4.068 17 N -0.350 5.350 18 C 0.162 3.838 19 N -0.270 5.270 20 C 0.318 3.682 21 N -0.316 5.316 22 C -0.045 4.045 23 C -0.028 4.028 24 O -0.296 6.296 25 C -0.032 4.032 26 C -0.027 4.027 27 N -0.353 5.353 28 H 0.070 0.930 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.246 0.754 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.246 0.754 41 H 0.108 0.892 42 H 0.105 0.895 43 H 0.078 0.922 44 H 0.128 0.872 45 H 0.079 0.921 46 H 0.132 0.868 47 H 0.140 0.860 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.472 -23.458 1.025 24.110 hybrid contribution 1.574 0.899 0.009 1.812 sum -3.899 -22.559 1.034 22.917 Atomic orbital electron populations 1.69965 1.06032 1.26550 1.50807 1.25016 0.94858 0.99278 0.95271 0.86541 0.80121 0.83772 0.77603 1.19752 1.20995 1.20992 1.21258 0.93065 0.90975 1.50650 0.92639 1.19003 0.93777 0.90830 0.97491 1.21904 0.99844 0.93588 1.00835 1.21595 0.91666 0.84850 1.01542 1.44777 1.09620 1.01981 1.76544 1.17055 0.86141 0.85089 0.84999 1.20431 0.96188 0.91350 1.36104 1.20758 0.90799 0.97702 1.00905 1.22449 0.92254 0.91256 1.00846 1.74105 0.97290 1.29580 1.33998 1.18855 0.81972 0.91863 0.91093 1.42150 1.04486 1.09002 1.71389 1.18103 0.82874 0.82290 0.84980 1.46157 1.00134 1.08534 1.76775 1.22595 0.97601 0.82700 1.01572 1.23034 0.91115 0.92294 0.96399 1.87999 1.34396 1.14761 1.92406 1.23124 0.96908 0.85061 0.98133 1.22486 0.90356 0.90231 0.99606 1.67518 1.14422 1.14847 1.38549 0.93016 0.96345 0.96348 0.92848 0.92842 0.92033 0.92070 0.75385 0.91970 0.91973 0.91256 0.91260 0.75414 0.89238 0.89519 0.92210 0.87172 0.92077 0.86783 0.86041 0.90140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.66 4.97 -27.88 -0.14 0.52 16 10 C -0.12 -2.40 5.27 -26.73 -0.14 -2.54 16 11 C 0.13 2.12 5.69 -4.04 -0.02 2.10 16 12 N -0.70 -10.58 5.68 -60.58 -0.34 -10.92 16 13 C 0.50 7.55 7.46 -154.74 -1.15 6.40 16 14 C -0.42 -6.31 6.25 -103.71 -0.65 -6.96 16 15 C -0.06 -0.83 6.64 -27.10 -0.18 -1.01 16 16 C 0.06 0.84 8.01 -3.24 -0.03 0.82 16 17 N -0.62 -9.49 11.64 -59.38 -0.69 -10.18 16 18 C 0.43 6.21 8.22 -155.41 -1.28 4.93 16 19 N -0.64 -7.18 5.36 -12.91 -0.07 -7.25 16 20 C 0.67 7.78 8.25 -321.31 -2.65 5.13 16 21 N -0.60 -5.06 3.08 -174.04 -0.54 -5.59 16 22 C 0.08 0.41 6.59 -3.31 -0.02 0.39 16 23 C 0.05 0.26 7.00 37.53 0.26 0.52 16 24 O -0.38 -2.93 10.74 -35.23 -0.38 -3.31 16 25 C 0.05 0.33 6.98 37.31 0.26 0.59 16 26 C 0.10 0.79 6.65 -3.53 -0.02 0.76 16 27 N -0.61 -8.67 8.12 -13.17 -0.11 -8.78 16 28 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.41 5.67 8.12 -40.82 -0.33 5.34 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.41 3.40 6.41 -40.82 -0.26 3.13 16 41 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.09 0.32 5.81 -51.93 -0.30 0.01 16 43 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.11 0.69 8.14 -51.92 -0.42 0.27 16 47 H 0.12 1.23 6.91 -51.93 -0.36 0.87 16 48 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 384.87 15.07 5.80 5.80 Total: -1.00 -33.59 384.87 -14.34 -47.93 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -7.56 Total: 3.11 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -6.17 Total: -1.57 kcal Atomic # 7 Polarization: -67.27 SS G_CDS: -1.01 Total: -68.28 kcal Atomic # 8 Polarization: -2.93 SS G_CDS: -0.38 Total: -3.31 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.59 -14.34 -47.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157637909.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.424 kcal (2) G-P(sol) polarization free energy of solvation -33.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds