Wall clock time and date at job start Tue Mar 31 2020 18:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00196 * 2 1 4 4 H 1.48499 * 109.47250 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46691 * 299.99755 * 3 2 1 6 6 H 1.48495 * 109.47518 * 59.99459 * 3 2 1 7 7 C 1.37883 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99980 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99833 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47303 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47212 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.47016 * 180.02562 * 11 10 9 13 13 C 1.38283 * 119.99781 * 180.02562 * 12 11 10 14 14 C 1.37726 * 120.00972 * 180.02562 * 13 12 11 15 15 C 1.51139 * 132.49120 * 0.04261 * 14 13 12 16 16 C 1.54083 * 103.32263 * 179.89197 * 15 14 13 17 17 N 1.46931 * 104.69141 * 0.12917 * 16 15 14 18 18 C 1.31280 * 111.57344 * 359.85959 * 17 16 15 19 19 N 1.39000 * 129.94813 * 180.11769 * 18 17 16 20 20 C 1.36174 * 119.74437 * 179.97438 * 19 18 17 21 21 N 1.36973 * 119.12460 * 179.97438 * 20 19 18 22 22 C 1.47159 * 120.98481 * 5.31932 * 21 20 19 23 23 C 1.53710 * 108.16282 * 129.42845 * 22 21 20 24 24 O 1.42961 * 109.14587 * 52.54386 * 23 22 21 25 25 C 1.42966 * 114.16293 * 297.28337 * 24 23 22 26 26 C 1.47148 * 120.98341 * 185.60132 * 21 20 19 27 27 N 1.31419 * 121.75040 * 359.97438 * 20 19 18 28 28 H 0.97000 * 120.00241 * 0.02562 * 1 2 3 29 29 H 1.09011 * 109.47110 * 59.99609 * 9 7 2 30 30 H 1.09001 * 109.47187 * 300.00268 * 9 7 2 31 31 H 1.08998 * 109.46756 * 60.00333 * 10 9 7 32 32 H 1.08998 * 109.47121 * 300.00377 * 10 9 7 33 33 H 1.08998 * 109.47027 * 60.00451 * 11 10 9 34 34 H 1.08998 * 109.47347 * 300.00191 * 11 10 9 35 35 H 0.96999 * 119.99518 * 359.97438 * 12 11 10 36 36 H 1.08999 * 110.67460 * 298.39976 * 15 14 13 37 37 H 1.09000 * 110.67646 * 61.38260 * 15 14 13 38 38 H 1.09002 * 110.35292 * 118.93696 * 16 15 14 39 39 H 1.09001 * 110.35298 * 241.22956 * 16 15 14 40 40 H 0.96999 * 120.13357 * 359.97438 * 19 18 17 41 41 H 1.08993 * 109.67926 * 249.21482 * 22 21 20 42 42 H 1.09001 * 109.67340 * 9.76172 * 22 21 20 43 43 H 1.08996 * 109.65918 * 292.57221 * 23 22 21 44 44 H 1.09005 * 109.48085 * 172.39649 * 23 22 21 45 45 H 1.09001 * 109.51423 * 302.65840 * 25 24 23 46 46 H 1.09008 * 109.54989 * 182.52791 * 25 24 23 47 47 H 1.08997 * 109.68134 * 350.23131 * 26 21 20 48 48 H 1.08994 * 109.68526 * 110.79065 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0005 11 6 1.4802 -4.9871 -0.0001 12 7 2.4322 -6.1007 0.0005 13 6 1.9712 -7.4044 -0.0005 14 6 2.8660 -8.4514 0.0007 15 6 4.3765 -8.5035 0.0037 16 6 4.6797 -10.0142 0.0061 17 7 3.3595 -10.6592 0.0011 18 6 2.3899 -9.7742 -0.0007 19 7 1.0123 -9.9596 -0.0031 20 6 0.1850 -8.8780 -0.0040 21 7 -1.1704 -9.0753 -0.0069 22 6 -1.7393 -10.4276 0.1080 23 6 -2.7973 -10.4092 1.2229 24 8 -3.7244 -9.3503 0.9721 25 6 -3.1410 -8.0452 0.9900 26 6 -2.1007 -7.9420 -0.1312 27 7 0.6526 -7.6498 -0.0023 28 1 -0.4850 0.8400 -0.0004 29 1 0.6246 -2.5571 -0.8897 30 1 0.6240 -2.5567 0.8903 31 1 2.8718 -3.6044 0.8906 32 1 2.8719 -3.6044 -0.8894 33 1 0.8539 -5.0446 -0.8904 34 1 0.8532 -5.0451 0.8896 35 1 3.3859 -5.9234 0.0008 36 1 4.7797 -8.0314 -0.8922 37 1 4.7761 -8.0292 0.9001 38 1 5.2409 -10.2897 -0.8868 39 1 5.2347 -10.2881 0.9034 40 1 0.6416 -10.8560 -0.0040 41 1 -2.2023 -10.7126 -0.8367 42 1 -0.9511 -11.1372 0.3599 43 1 -2.3125 -10.2483 2.1858 44 1 -3.3274 -11.3615 1.2368 45 1 -2.6574 -7.8757 1.9521 46 1 -3.9178 -7.2962 0.8359 47 1 -1.5520 -7.0048 -0.0377 48 1 -2.5995 -7.9810 -1.0995 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157637909.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:05 Heat of formation + Delta-G solvation = 19.605937 kcal Electronic energy + Delta-G solvation = -28649.450219 eV Core-core repulsion = 24739.283987 eV Total energy + Delta-G solvation = -3910.166233 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.37545 -40.45411 -38.48899 -38.29942 -36.14254 -35.58837 -34.55452 -33.00909 -32.22227 -30.57163 -30.21472 -28.35286 -27.93948 -25.61139 -24.91650 -24.36666 -23.26149 -22.33509 -22.05145 -21.45939 -19.47153 -18.77763 -18.60522 -18.22412 -17.28074 -17.16224 -16.96645 -16.49477 -16.29398 -16.15234 -16.07481 -15.88326 -15.76346 -15.47034 -15.12971 -14.68210 -14.27537 -14.01196 -13.72373 -13.57715 -13.31750 -13.08046 -12.95799 -12.81460 -12.76658 -12.53580 -12.41191 -12.29977 -12.25372 -12.09884 -11.68342 -11.52938 -11.49118 -11.17122 -11.02922 -10.92318 -10.54456 -10.34759 -9.73469 -9.47116 -8.19165 -7.87294 -6.29409 0.19829 0.84813 1.12527 1.40947 1.41820 1.54359 1.90945 2.31201 2.43576 2.73267 2.82959 3.14657 3.44162 3.62892 3.68615 3.86541 3.97657 4.07310 4.12393 4.19496 4.22830 4.27928 4.34347 4.36075 4.43049 4.54384 4.61518 4.69499 4.71940 4.80109 4.89759 4.92676 5.01264 5.01693 5.05793 5.17802 5.22231 5.30637 5.34794 5.45769 5.52723 5.74066 5.74422 5.85762 6.05035 6.07857 6.24062 6.32122 6.47756 6.87269 6.99272 7.23934 7.39688 8.92757 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009856 B = 0.002922 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.197236 B = 9579.857403 C =12283.111579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.001 3.999 3 Si 0.962 3.038 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.060 0.940 9 C 0.030 3.970 10 C -0.107 4.107 11 C 0.149 3.851 12 N -0.701 5.701 13 C 0.488 3.512 14 C -0.440 4.440 15 C -0.060 4.060 16 C 0.059 3.941 17 N -0.641 5.641 18 C 0.421 3.579 19 N -0.628 5.628 20 C 0.675 3.325 21 N -0.588 5.588 22 C 0.074 3.926 23 C 0.047 3.953 24 O -0.390 6.390 25 C 0.051 3.949 26 C 0.095 3.905 27 N -0.640 5.640 28 H 0.263 0.737 29 H -0.004 1.004 30 H -0.004 1.004 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.415 0.585 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.421 0.579 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.055 0.945 44 H 0.138 0.862 45 H 0.053 0.947 46 H 0.125 0.875 47 H 0.100 0.900 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.494 -24.558 1.014 24.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.787 3.213 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.580 4.580 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.145 4.145 11 C 0.025 3.975 12 N -0.330 5.330 13 C 0.260 3.740 14 C -0.460 4.460 15 C -0.099 4.099 16 C -0.071 4.071 17 N -0.371 5.371 18 C 0.155 3.845 19 N -0.261 5.261 20 C 0.318 3.682 21 N -0.306 5.306 22 C -0.047 4.047 23 C -0.030 4.030 24 O -0.309 6.309 25 C -0.026 4.026 26 C -0.027 4.027 27 N -0.381 5.381 28 H 0.072 0.928 29 H 0.014 0.986 30 H 0.014 0.986 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.253 0.747 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.263 0.737 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.074 0.926 44 H 0.156 0.844 45 H 0.071 0.929 46 H 0.143 0.857 47 H 0.118 0.882 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.262 -24.600 0.981 25.175 hybrid contribution 1.392 1.132 0.029 1.794 sum -3.870 -23.467 1.010 23.806 Atomic orbital electron populations 1.70087 1.07654 1.27668 1.51667 1.25930 0.95759 1.03186 0.94820 0.85442 0.79108 0.79034 0.77728 1.18697 1.20466 1.20449 1.21706 0.93557 0.92329 1.50435 0.92202 1.18879 0.94208 0.92382 0.95278 1.21622 0.98646 0.92896 1.01302 1.21145 0.91297 0.84282 1.00813 1.44550 1.09497 1.01631 1.77311 1.17206 0.86819 0.84893 0.85094 1.20679 0.97075 0.91609 1.36608 1.20766 0.89986 0.97781 1.01360 1.22538 0.91815 0.91200 1.01593 1.74073 0.98087 1.30257 1.34695 1.18991 0.82996 0.91637 0.90842 1.42010 1.03485 1.09708 1.70874 1.18255 0.83918 0.81802 0.84196 1.46460 0.98932 1.10108 1.75070 1.22906 0.98126 0.81118 1.02586 1.23236 0.91044 0.92719 0.96035 1.87987 1.35363 1.15102 1.92415 1.23071 0.96786 0.85596 0.97185 1.22499 0.90186 0.89427 1.00632 1.67524 1.13997 1.16387 1.40147 0.92774 0.98576 0.98561 0.92293 0.92302 0.92825 0.92847 0.74732 0.91501 0.91474 0.90520 0.90488 0.73734 0.87563 0.87740 0.92618 0.84439 0.92901 0.85732 0.88158 0.89068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.55 13.29 21.45 0.28 -55.26 16 2 C 0.00 0.06 5.46 84.66 0.46 0.52 16 3 Si 0.96 43.66 29.54 68.60 2.03 45.69 16 4 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.54 -30.21 9.11 25.60 0.23 -29.98 16 8 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 9 C 0.03 1.54 4.97 29.85 0.15 1.69 16 10 C -0.11 -4.16 5.27 30.59 0.16 -4.00 16 11 C 0.15 5.05 5.69 86.38 0.49 5.54 16 12 N -0.70 -21.03 5.68 -345.58 -1.96 -22.99 16 13 C 0.49 14.79 7.46 132.45 0.99 15.78 16 14 C -0.44 -12.94 6.25 -19.27 -0.12 -13.06 16 15 C -0.06 -1.53 6.64 30.35 0.20 -1.33 16 16 C 0.06 1.53 8.01 86.66 0.69 2.22 16 17 N -0.64 -18.91 11.64 -341.78 -3.98 -22.89 16 18 C 0.42 11.84 8.22 133.75 1.10 12.94 16 19 N -0.63 -13.30 5.36 -194.75 -1.04 -14.34 16 20 C 0.67 15.00 8.25 260.96 2.15 17.15 16 21 N -0.59 -9.21 3.08 -704.54 -2.17 -11.38 16 22 C 0.07 0.59 6.59 86.49 0.57 1.16 16 23 C 0.05 0.38 7.00 72.22 0.51 0.89 16 24 O -0.39 -5.40 10.74 -148.98 -1.60 -7.00 16 25 C 0.05 0.71 6.98 72.08 0.50 1.21 16 26 C 0.09 1.51 6.65 86.36 0.57 2.09 16 27 N -0.64 -18.03 8.12 -195.56 -1.59 -19.62 16 28 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 29 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 30 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 31 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.42 11.28 8.12 -92.71 -0.75 10.52 16 36 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.08 1.81 8.14 -2.39 -0.02 1.80 16 39 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.42 6.20 6.41 -92.71 -0.59 5.60 16 41 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.10 0.46 5.81 -2.39 -0.01 0.45 16 43 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.14 0.38 8.14 -2.38 -0.02 0.36 16 45 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.12 1.43 8.14 -2.38 -0.02 1.41 16 47 H 0.10 2.09 6.91 -2.39 -0.02 2.08 16 48 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -72.08 384.87 -1.72 -73.81 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: -0.36 Total: 21.17 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: 8.67 Total: 12.82 kcal Atomic # 7 Polarization: -136.03 SS G_CDS: -10.45 Total: -146.48 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -1.60 Total: -7.00 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -72.08 -1.72 -73.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157637909.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.411 kcal (2) G-P(sol) polarization free energy of solvation -72.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds