Wall clock time and date at job start Tue Mar 31 2020 18:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30343 * 1 3 3 N 1.37489 * 119.99981 * 2 1 4 4 N 1.37484 * 120.00177 * 179.97438 * 2 1 3 5 5 C 1.46502 * 119.99810 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.46699 * 180.02562 * 5 4 2 7 7 C 1.53005 * 109.46871 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.46871 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.46937 * 180.02562 * 8 7 6 10 10 O 1.21283 * 120.00489 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99979 * 180.02562 * 9 8 7 12 12 C 1.46494 * 120.00110 * 3.00057 * 11 9 8 13 13 C 1.50699 * 109.47341 * 229.65708 * 12 11 9 14 14 H 1.08002 * 119.99934 * 243.51001 * 13 12 11 15 15 C 1.37873 * 120.00129 * 63.50696 * 13 12 11 16 16 N 1.31510 * 119.99989 * 186.18836 * 15 13 12 17 17 Si 1.86796 * 119.99962 * 6.19169 * 15 13 12 18 18 H 1.48500 * 109.47221 * 84.31653 * 17 15 13 19 19 H 1.48509 * 109.46876 * 204.31931 * 17 15 13 20 20 H 1.48504 * 109.47014 * 324.31299 * 17 15 13 21 21 C 1.46503 * 119.99916 * 183.00436 * 11 9 8 22 22 C 1.50697 * 109.47161 * 274.90130 * 21 11 9 23 23 C 1.38664 * 120.42237 * 274.77447 * 22 21 11 24 24 C 1.38624 * 118.42188 * 179.78231 * 23 22 21 25 25 C 1.38229 * 119.16109 * 0.51446 * 24 23 22 26 26 N 1.31858 * 120.76260 * 359.72841 * 25 24 23 27 27 C 1.31886 * 121.72415 * 359.97438 * 26 25 24 28 28 H 0.97002 * 119.99893 * 0.02562 * 1 2 3 29 29 H 0.96994 * 119.99649 * 180.02562 * 3 2 1 30 30 H 0.96993 * 119.99901 * 359.97438 * 3 2 1 31 31 H 0.96995 * 119.99975 * 359.97438 * 4 2 1 32 32 H 1.08994 * 109.47746 * 60.00079 * 5 4 2 33 33 H 1.09000 * 109.47185 * 299.99356 * 5 4 2 34 34 H 1.09001 * 109.47598 * 60.00156 * 6 5 4 35 35 H 1.08998 * 109.47449 * 299.99931 * 6 5 4 36 36 H 1.08990 * 109.46959 * 60.00215 * 7 6 5 37 37 H 1.09000 * 109.47322 * 299.99543 * 7 6 5 38 38 H 1.09006 * 109.47404 * 59.99963 * 8 7 6 39 39 H 1.08998 * 109.47449 * 300.00205 * 8 7 6 40 40 H 1.09001 * 109.47260 * 109.65529 * 12 11 9 41 41 H 1.09004 * 109.47493 * 349.65956 * 12 11 9 42 42 H 0.97008 * 120.00238 * 179.97438 * 16 15 13 43 43 H 1.09003 * 109.46866 * 34.90710 * 21 11 9 44 44 H 1.09008 * 109.46861 * 154.90216 * 21 11 9 45 45 H 1.08002 * 120.79127 * 0.02562 * 23 22 21 46 46 H 1.08007 * 120.42069 * 180.21730 * 24 23 22 47 47 H 1.07998 * 119.61965 * 179.74697 * 25 24 23 48 48 H 1.08000 * 119.61522 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3034 0.0000 0.0000 3 7 1.9909 1.1907 0.0000 4 7 1.9909 -1.1906 0.0005 5 6 3.4559 -1.1905 0.0011 6 6 3.9659 -2.6331 0.0010 7 6 5.4960 -2.6330 0.0009 8 6 6.0059 -4.0755 0.0002 9 6 7.5129 -4.0755 0.0007 10 8 8.1194 -3.0252 0.0021 11 7 8.1868 -5.2427 -0.0003 12 6 7.4559 -6.5104 -0.0684 13 6 7.9518 -7.4350 1.0135 14 1 8.4371 -8.3631 0.7500 15 6 7.7859 -7.0959 2.3395 16 7 8.3243 -7.8399 3.2808 17 14 6.7964 -5.5797 2.7991 18 1 5.3525 -5.9243 2.8391 19 1 7.2267 -5.0940 4.1350 20 1 7.0235 -4.5153 1.7887 21 6 9.6503 -5.2436 0.0668 22 6 10.2169 -5.0839 -1.3205 23 6 10.3940 -6.1896 -2.1382 24 6 10.9141 -5.9945 -3.4083 25 6 11.2465 -4.7145 -3.8107 26 7 11.0690 -3.6866 -3.0042 27 6 10.5714 -3.8342 -1.7917 28 1 -0.4850 0.8401 -0.0004 29 1 2.9608 1.1906 -0.0004 30 1 1.5059 2.0307 -0.0004 31 1 1.5059 -2.0306 0.0013 32 1 3.8190 -0.6765 0.8910 33 1 3.8196 -0.6770 -0.8889 34 1 3.6030 -3.1468 -0.8893 35 1 3.6023 -3.1471 0.8907 36 1 5.8592 -2.1193 0.8909 37 1 5.8593 -2.1192 -0.8891 38 1 5.6426 -4.5890 -0.8901 39 1 5.6426 -4.5899 0.8898 40 1 7.6180 -6.9714 -1.0427 41 1 6.3912 -6.3241 0.0727 42 1 8.2080 -7.6012 4.2138 43 1 9.9858 -4.4174 0.6937 44 1 9.9939 -6.1861 0.4933 45 1 10.1294 -7.1790 -1.7952 46 1 11.0622 -6.8326 -4.0733 47 1 11.6560 -4.5545 -4.7971 48 1 10.4400 -2.9683 -1.1597 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157730012.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:55 Heat of formation + Delta-G solvation = 37.365498 kcal Electronic energy + Delta-G solvation = -28560.787125 eV Core-core repulsion = 24651.391005 eV Total energy + Delta-G solvation = -3909.396120 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.09827 -39.21627 -38.63237 -35.83056 -35.24555 -33.20430 -32.77435 -32.08953 -31.44449 -31.19054 -28.99997 -28.05605 -26.15448 -23.93130 -23.24831 -22.51690 -21.87093 -21.40329 -20.76162 -18.52587 -17.60400 -17.32668 -16.98678 -16.84489 -16.55597 -16.33571 -15.65983 -15.60486 -15.36170 -15.10653 -14.76247 -14.30508 -14.26622 -13.75737 -13.56254 -13.37346 -13.05540 -12.83780 -12.70191 -12.45996 -12.43912 -11.90572 -11.60165 -11.54581 -11.40597 -11.18607 -11.00900 -10.81511 -10.74213 -10.62249 -10.00778 -9.59579 -9.57446 -9.52017 -9.36811 -9.22328 -9.12585 -8.87702 -8.61708 -8.18147 -7.71095 -6.40640 -4.48335 1.36998 1.57154 2.84168 2.87971 2.94046 3.07514 3.23620 3.53315 3.76314 3.88659 4.17834 4.24078 4.62754 4.71560 4.79125 4.87943 5.08311 5.09308 5.23892 5.28579 5.30783 5.32572 5.34089 5.42008 5.62573 5.70617 5.75304 5.75807 5.81848 5.86607 6.00884 6.19268 6.23106 6.32432 6.35191 6.37590 6.40237 6.53997 6.61881 6.71268 6.73613 7.00823 7.13866 7.27247 7.35022 7.83450 8.11471 8.23560 8.33606 8.63454 8.65415 8.88875 9.21600 10.68832 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009933 B = 0.003243 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2818.286524 B = 8632.689653 C =10790.136399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.640 3.360 3 N -0.900 5.900 4 N -0.725 5.725 5 C 0.122 3.878 6 C -0.132 4.132 7 C -0.098 4.098 8 C -0.147 4.147 9 C 0.520 3.480 10 O -0.570 6.570 11 N -0.595 5.595 12 C 0.195 3.805 13 C -0.540 4.540 14 H 0.078 0.922 15 C 0.089 3.911 16 N -0.878 5.878 17 Si 0.851 3.149 18 H -0.275 1.275 19 H -0.292 1.292 20 H -0.226 1.226 21 C 0.162 3.838 22 C -0.138 4.138 23 C -0.060 4.060 24 C -0.181 4.181 25 C 0.084 3.916 26 N -0.494 5.494 27 C 0.116 3.884 28 H 0.336 0.664 29 H 0.390 0.610 30 H 0.404 0.596 31 H 0.417 0.583 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.037 0.963 41 H 0.043 0.957 42 H 0.269 0.731 43 H 0.074 0.926 44 H 0.108 0.892 45 H 0.137 0.863 46 H 0.129 0.871 47 H 0.147 0.853 48 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.718 10.035 -8.762 13.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C 0.271 3.729 3 N -0.458 5.458 4 N -0.371 5.371 5 C -0.003 4.003 6 C -0.170 4.170 7 C -0.136 4.136 8 C -0.187 4.187 9 C 0.310 3.690 10 O -0.452 6.452 11 N -0.327 5.327 12 C 0.077 3.923 13 C -0.578 4.578 14 H 0.096 0.904 15 C -0.118 4.118 16 N -0.513 5.513 17 Si 0.679 3.321 18 H -0.201 1.201 19 H -0.218 1.218 20 H -0.151 1.151 21 C 0.039 3.961 22 C -0.141 4.141 23 C -0.087 4.087 24 C -0.201 4.201 25 C -0.073 4.073 26 N -0.202 5.202 27 C -0.041 4.041 28 H 0.152 0.848 29 H 0.219 0.781 30 H 0.234 0.766 31 H 0.254 0.746 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.126 0.874 45 H 0.155 0.845 46 H 0.147 0.853 47 H 0.165 0.835 48 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.671 10.555 -8.839 14.248 hybrid contribution -0.433 0.621 0.815 1.112 sum -4.104 11.176 -8.025 14.358 Atomic orbital electron populations 1.69758 1.01931 1.34468 1.42975 1.18858 0.86870 0.80525 0.86609 1.43477 1.10330 1.06200 1.85787 1.43961 1.05386 1.05088 1.82659 1.21386 0.79058 0.98605 1.01205 1.21789 0.96725 0.95109 1.03343 1.21203 0.92643 0.96114 1.03657 1.22130 0.93742 0.98611 1.04179 1.20201 0.89792 0.83886 0.75162 1.90574 1.70470 1.31707 1.52411 1.49258 1.05600 1.07237 1.70572 1.19797 0.92738 0.81972 0.97836 1.21145 1.40859 1.06009 0.89763 0.90380 1.25053 0.94096 0.96211 0.96448 1.69917 1.41807 1.38836 1.00785 0.87738 0.80487 0.84953 0.78904 1.20139 1.21812 1.15062 1.20024 0.81077 1.04485 0.90563 1.21521 0.99223 0.94105 0.99249 1.21624 0.94487 0.99585 0.92988 1.22086 1.02020 0.98656 0.97352 1.22654 0.97099 0.88670 0.98890 1.67695 1.13271 1.34512 1.04758 1.22846 0.92763 0.96812 0.91676 0.84819 0.78147 0.76580 0.74577 0.92033 0.92002 0.90844 0.90939 0.91073 0.91010 0.89506 0.89134 0.94482 0.93917 0.92149 0.90770 0.87404 0.84522 0.85312 0.83522 0.82569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -10.42 14.13 30.15 0.43 -9.99 16 2 C 0.64 6.79 8.93 -320.08 -2.86 3.93 16 3 N -0.90 -6.59 8.92 30.14 0.27 -6.32 16 4 N -0.73 -7.08 5.67 -61.79 -0.35 -7.43 16 5 C 0.12 1.06 5.05 -4.04 -0.02 1.04 16 6 C -0.13 -1.29 5.33 -26.73 -0.14 -1.43 16 7 C -0.10 -1.23 4.50 -26.73 -0.12 -1.35 16 8 C -0.15 -2.24 3.50 -27.88 -0.10 -2.34 16 9 C 0.52 9.66 5.23 -10.99 -0.06 9.60 16 10 O -0.57 -11.56 14.87 5.56 0.08 -11.48 16 11 N -0.59 -11.29 1.71 -176.43 -0.30 -11.59 16 12 C 0.20 3.80 5.39 -5.20 -0.03 3.77 16 13 C -0.54 -12.80 8.42 -34.44 -0.29 -13.09 16 14 H 0.08 2.03 8.06 -52.49 -0.42 1.61 16 15 C 0.09 2.23 5.46 -17.82 -0.10 2.13 16 16 N -0.88 -24.12 13.96 55.43 0.77 -23.35 16 17 Si 0.85 18.53 24.37 -169.99 -4.14 14.39 16 18 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.23 -4.51 2.19 56.52 0.12 -4.39 16 21 C 0.16 3.00 5.32 -5.19 -0.03 2.97 16 22 C -0.14 -2.31 5.44 -104.49 -0.57 -2.88 16 23 C -0.06 -0.91 9.88 -39.28 -0.39 -1.30 16 24 C -0.18 -2.37 10.11 -39.44 -0.40 -2.77 16 25 C 0.08 1.15 11.18 -17.54 -0.20 0.96 16 26 N -0.49 -8.12 10.36 -13.25 -0.14 -8.25 16 27 C 0.12 1.98 10.53 -17.55 -0.18 1.79 16 28 H 0.34 3.64 8.80 -40.82 -0.36 3.28 16 29 H 0.39 2.41 7.36 -40.82 -0.30 2.11 16 30 H 0.40 2.24 8.83 -40.82 -0.36 1.88 16 31 H 0.42 4.08 8.59 -40.82 -0.35 3.73 16 32 H 0.06 0.52 8.00 -51.93 -0.42 0.11 16 33 H 0.06 0.50 8.00 -51.93 -0.42 0.08 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 37 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 38 H 0.09 1.17 7.86 -51.93 -0.41 0.76 16 39 H 0.09 1.46 4.12 -51.93 -0.21 1.24 16 40 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.04 0.79 5.11 -51.93 -0.27 0.52 16 42 H 0.27 7.04 8.31 -40.82 -0.34 6.71 16 43 H 0.07 1.40 7.54 -51.93 -0.39 1.01 16 44 H 0.11 2.13 6.82 -51.92 -0.35 1.78 16 45 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 46 H 0.13 1.30 8.06 -52.48 -0.42 0.87 16 47 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 48 H 0.16 2.71 7.58 -52.49 -0.40 2.32 16 LS Contribution 384.44 15.07 5.79 5.79 Total: -1.00 -30.39 384.44 -10.51 -40.90 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: -7.45 Total: 16.28 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: -5.48 Total: 1.05 kcal Atomic # 7 Polarization: -67.61 SS G_CDS: 0.68 Total: -66.93 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.08 Total: -11.48 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -4.14 Total: 14.39 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.39 -10.51 -40.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157730012.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.269 kcal (2) G-P(sol) polarization free energy of solvation -30.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds