Wall clock time and date at job start Tue Mar 31 2020 18:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30343 * 1 3 3 N 1.37489 * 119.99981 * 2 1 4 4 N 1.37484 * 120.00177 * 179.97438 * 2 1 3 5 5 C 1.46502 * 119.99810 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.46699 * 180.02562 * 5 4 2 7 7 C 1.53005 * 109.46871 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.46871 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.46937 * 180.02562 * 8 7 6 10 10 O 1.21283 * 120.00489 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99979 * 180.02562 * 9 8 7 12 12 C 1.46494 * 120.00110 * 3.00057 * 11 9 8 13 13 C 1.50699 * 109.47341 * 229.65708 * 12 11 9 14 14 H 1.08002 * 119.99934 * 243.51001 * 13 12 11 15 15 C 1.37873 * 120.00129 * 63.50696 * 13 12 11 16 16 N 1.31510 * 119.99989 * 186.18836 * 15 13 12 17 17 Si 1.86796 * 119.99962 * 6.19169 * 15 13 12 18 18 H 1.48500 * 109.47221 * 84.31653 * 17 15 13 19 19 H 1.48509 * 109.46876 * 204.31931 * 17 15 13 20 20 H 1.48504 * 109.47014 * 324.31299 * 17 15 13 21 21 C 1.46503 * 119.99916 * 183.00436 * 11 9 8 22 22 C 1.50697 * 109.47161 * 274.90130 * 21 11 9 23 23 C 1.38664 * 120.42237 * 274.77447 * 22 21 11 24 24 C 1.38624 * 118.42188 * 179.78231 * 23 22 21 25 25 C 1.38229 * 119.16109 * 0.51446 * 24 23 22 26 26 N 1.31858 * 120.76260 * 359.72841 * 25 24 23 27 27 C 1.31886 * 121.72415 * 359.97438 * 26 25 24 28 28 H 0.97002 * 119.99893 * 0.02562 * 1 2 3 29 29 H 0.96994 * 119.99649 * 180.02562 * 3 2 1 30 30 H 0.96993 * 119.99901 * 359.97438 * 3 2 1 31 31 H 0.96995 * 119.99975 * 359.97438 * 4 2 1 32 32 H 1.08994 * 109.47746 * 60.00079 * 5 4 2 33 33 H 1.09000 * 109.47185 * 299.99356 * 5 4 2 34 34 H 1.09001 * 109.47598 * 60.00156 * 6 5 4 35 35 H 1.08998 * 109.47449 * 299.99931 * 6 5 4 36 36 H 1.08990 * 109.46959 * 60.00215 * 7 6 5 37 37 H 1.09000 * 109.47322 * 299.99543 * 7 6 5 38 38 H 1.09006 * 109.47404 * 59.99963 * 8 7 6 39 39 H 1.08998 * 109.47449 * 300.00205 * 8 7 6 40 40 H 1.09001 * 109.47260 * 109.65529 * 12 11 9 41 41 H 1.09004 * 109.47493 * 349.65956 * 12 11 9 42 42 H 0.97008 * 120.00238 * 179.97438 * 16 15 13 43 43 H 1.09003 * 109.46866 * 34.90710 * 21 11 9 44 44 H 1.09008 * 109.46861 * 154.90216 * 21 11 9 45 45 H 1.08002 * 120.79127 * 0.02562 * 23 22 21 46 46 H 1.08007 * 120.42069 * 180.21730 * 24 23 22 47 47 H 1.07998 * 119.61965 * 179.74697 * 25 24 23 48 48 H 1.08000 * 119.61522 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3034 0.0000 0.0000 3 7 1.9909 1.1907 0.0000 4 7 1.9909 -1.1906 0.0005 5 6 3.4559 -1.1905 0.0011 6 6 3.9659 -2.6331 0.0010 7 6 5.4960 -2.6330 0.0009 8 6 6.0059 -4.0755 0.0002 9 6 7.5129 -4.0755 0.0007 10 8 8.1194 -3.0252 0.0021 11 7 8.1868 -5.2427 -0.0003 12 6 7.4559 -6.5104 -0.0684 13 6 7.9518 -7.4350 1.0135 14 1 8.4371 -8.3631 0.7500 15 6 7.7859 -7.0959 2.3395 16 7 8.3243 -7.8399 3.2808 17 14 6.7964 -5.5797 2.7991 18 1 5.3525 -5.9243 2.8391 19 1 7.2267 -5.0940 4.1350 20 1 7.0235 -4.5153 1.7887 21 6 9.6503 -5.2436 0.0668 22 6 10.2169 -5.0839 -1.3205 23 6 10.3940 -6.1896 -2.1382 24 6 10.9141 -5.9945 -3.4083 25 6 11.2465 -4.7145 -3.8107 26 7 11.0690 -3.6866 -3.0042 27 6 10.5714 -3.8342 -1.7917 28 1 -0.4850 0.8401 -0.0004 29 1 2.9608 1.1906 -0.0004 30 1 1.5059 2.0307 -0.0004 31 1 1.5059 -2.0306 0.0013 32 1 3.8190 -0.6765 0.8910 33 1 3.8196 -0.6770 -0.8889 34 1 3.6030 -3.1468 -0.8893 35 1 3.6023 -3.1471 0.8907 36 1 5.8592 -2.1193 0.8909 37 1 5.8593 -2.1192 -0.8891 38 1 5.6426 -4.5890 -0.8901 39 1 5.6426 -4.5899 0.8898 40 1 7.6180 -6.9714 -1.0427 41 1 6.3912 -6.3241 0.0727 42 1 8.2080 -7.6012 4.2138 43 1 9.9858 -4.4174 0.6937 44 1 9.9939 -6.1861 0.4933 45 1 10.1294 -7.1790 -1.7952 46 1 11.0622 -6.8326 -4.0733 47 1 11.6560 -4.5545 -4.7971 48 1 10.4400 -2.9683 -1.1597 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157730012.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:54 Heat of formation + Delta-G solvation = 17.948831 kcal Electronic energy + Delta-G solvation = -28561.629095 eV Core-core repulsion = 24651.391005 eV Total energy + Delta-G solvation = -3910.238090 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.42623 -40.53074 -39.39246 -37.10450 -36.42417 -34.64309 -34.07784 -33.39499 -32.60700 -31.98232 -30.02908 -29.75868 -27.44273 -25.01577 -24.49915 -24.14657 -22.96322 -22.30876 -21.61563 -20.02831 -18.76809 -18.32686 -18.11738 -18.04262 -17.89729 -17.59105 -16.91581 -16.71750 -16.61820 -16.03766 -15.96906 -15.76742 -15.18770 -15.05221 -14.81856 -14.67146 -14.27538 -14.17411 -13.90291 -13.71369 -13.46215 -13.25568 -12.86071 -12.75989 -12.61297 -12.53833 -12.43369 -12.29748 -12.07176 -11.86345 -11.58507 -11.18136 -10.83312 -10.78321 -10.55848 -10.40360 -10.39444 -10.01371 -9.87859 -9.26831 -8.96728 -8.36483 -6.46392 0.19041 0.38180 1.16113 1.30794 1.42960 1.98045 2.14628 2.16150 2.32191 2.41960 2.96956 3.10126 3.23226 3.57914 3.77281 3.82077 3.96718 4.00958 4.01361 4.14929 4.18597 4.33821 4.34186 4.38947 4.55453 4.63490 4.72291 4.81172 4.82852 4.83856 4.89181 4.95872 5.01056 5.05230 5.08456 5.25437 5.29501 5.37922 5.40874 5.47004 5.66744 5.72489 5.83967 6.12311 6.22983 6.57822 6.61817 6.83799 7.05735 7.17104 7.25795 7.40370 7.90458 8.75948 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009933 B = 0.003243 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2818.286524 B = 8632.689653 C =10790.136399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.635 3.365 3 N -0.888 5.888 4 N -0.725 5.725 5 C 0.126 3.874 6 C -0.123 4.123 7 C -0.091 4.091 8 C -0.149 4.149 9 C 0.511 3.489 10 O -0.588 6.588 11 N -0.599 5.599 12 C 0.205 3.795 13 C -0.530 4.530 14 H 0.044 0.956 15 C 0.039 3.961 16 N -0.931 5.931 17 Si 0.902 3.098 18 H -0.259 1.259 19 H -0.315 1.315 20 H -0.202 1.202 21 C 0.169 3.831 22 C -0.150 4.150 23 C -0.068 4.068 24 C -0.167 4.167 25 C 0.085 3.915 26 N -0.513 5.513 27 C 0.105 3.895 28 H 0.339 0.661 29 H 0.398 0.602 30 H 0.413 0.587 31 H 0.416 0.584 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.111 0.889 39 H 0.086 0.914 40 H 0.053 0.947 41 H 0.063 0.937 42 H 0.265 0.735 43 H 0.061 0.939 44 H 0.087 0.913 45 H 0.139 0.861 46 H 0.167 0.833 47 H 0.185 0.815 48 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.595 11.047 -11.363 16.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C 0.266 3.734 3 N -0.447 5.447 4 N -0.370 5.370 5 C 0.002 3.998 6 C -0.161 4.161 7 C -0.129 4.129 8 C -0.188 4.188 9 C 0.302 3.698 10 O -0.470 6.470 11 N -0.330 5.330 12 C 0.086 3.914 13 C -0.569 4.569 14 H 0.063 0.937 15 C -0.162 4.162 16 N -0.569 5.569 17 Si 0.729 3.271 18 H -0.184 1.184 19 H -0.244 1.244 20 H -0.126 1.126 21 C 0.045 3.955 22 C -0.153 4.153 23 C -0.094 4.094 24 C -0.186 4.186 25 C -0.072 4.072 26 N -0.222 5.222 27 C -0.052 4.052 28 H 0.155 0.845 29 H 0.228 0.772 30 H 0.244 0.756 31 H 0.253 0.747 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.129 0.871 39 H 0.104 0.896 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.105 0.895 45 H 0.157 0.843 46 H 0.185 0.815 47 H 0.202 0.798 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.538 11.592 -11.470 16.927 hybrid contribution -0.012 0.253 1.494 1.515 sum -4.550 11.845 -9.976 16.141 Atomic orbital electron populations 1.69736 1.03108 1.35177 1.44780 1.18973 0.86902 0.81424 0.86104 1.43350 1.10740 1.05711 1.84852 1.44012 1.05711 1.04922 1.82385 1.21368 0.78420 0.98104 1.01914 1.21677 0.94493 0.95929 1.03975 1.21131 0.94491 0.94157 1.03154 1.22187 0.90871 1.00703 1.05026 1.20850 0.91312 0.83153 0.74511 1.90573 1.71288 1.32163 1.52986 1.49058 1.05800 1.07341 1.70845 1.19681 0.93458 0.81329 0.96974 1.21328 1.39312 1.05474 0.90758 0.93732 1.25753 0.95156 0.98735 0.96549 1.70057 1.44645 1.41250 1.00980 0.87009 0.79808 0.82487 0.77764 1.18414 1.24382 1.12605 1.19855 0.81145 1.02700 0.91835 1.21285 1.00602 0.94887 0.98503 1.21758 0.94789 0.99029 0.93855 1.22454 0.99811 0.99709 0.96617 1.23319 0.95805 0.88281 0.99767 1.67705 1.13807 1.35972 1.04689 1.22627 0.93919 0.96388 0.92248 0.84452 0.77227 0.75558 0.74701 0.91658 0.90994 0.89621 0.90962 0.92219 0.90977 0.87061 0.89596 0.92894 0.91860 0.92620 0.92038 0.89499 0.84350 0.81526 0.79841 0.83978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -20.70 14.13 -58.53 -0.83 -21.53 16 2 C 0.64 12.33 8.93 260.53 2.33 14.65 16 3 N -0.89 -11.15 8.92 -58.56 -0.52 -11.67 16 4 N -0.73 -12.53 5.67 -349.40 -1.98 -14.51 16 5 C 0.13 1.84 5.05 86.38 0.44 2.27 16 6 C -0.12 -2.01 5.33 30.60 0.16 -1.85 16 7 C -0.09 -2.04 4.50 30.60 0.14 -1.91 16 8 C -0.15 -4.09 3.50 29.85 0.10 -3.99 16 9 C 0.51 18.18 5.23 87.66 0.46 18.64 16 10 O -0.59 -23.33 14.87 -3.04 -0.05 -23.38 16 11 N -0.60 -22.22 1.71 -830.49 -1.42 -23.64 16 12 C 0.20 7.69 5.39 85.63 0.46 8.15 16 13 C -0.53 -25.45 8.42 25.60 0.22 -25.24 16 14 H 0.04 2.40 8.06 -2.91 -0.02 2.37 16 15 C 0.04 2.02 5.46 84.65 0.46 2.48 16 16 N -0.93 -53.15 13.96 21.45 0.30 -52.85 16 17 Si 0.90 38.42 24.37 68.60 1.67 40.09 16 18 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 19 H -0.32 -14.71 7.11 99.48 0.71 -14.00 16 20 H -0.20 -7.75 2.19 99.48 0.22 -7.53 16 21 C 0.17 6.34 5.32 85.63 0.46 6.80 16 22 C -0.15 -4.97 5.44 -19.78 -0.11 -5.08 16 23 C -0.07 -1.93 9.88 22.46 0.22 -1.71 16 24 C -0.17 -3.78 10.11 22.36 0.23 -3.55 16 25 C 0.09 2.06 11.18 84.69 0.95 3.01 16 26 N -0.51 -16.01 10.36 -195.84 -2.03 -18.04 16 27 C 0.10 3.53 10.53 84.67 0.89 4.42 16 28 H 0.34 7.08 8.80 -92.71 -0.82 6.26 16 29 H 0.40 3.94 7.36 -92.71 -0.68 3.26 16 30 H 0.41 3.80 8.83 -92.71 -0.82 2.99 16 31 H 0.42 7.29 8.59 -92.71 -0.80 6.49 16 32 H 0.07 0.93 8.00 -2.39 -0.02 0.91 16 33 H 0.07 0.93 8.00 -2.39 -0.02 0.91 16 34 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.06 1.49 8.10 -2.39 -0.02 1.47 16 37 H 0.07 1.64 8.10 -2.39 -0.02 1.62 16 38 H 0.11 2.56 7.86 -2.38 -0.02 2.54 16 39 H 0.09 2.49 4.12 -2.39 -0.01 2.48 16 40 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.06 2.16 5.11 -2.38 -0.01 2.14 16 42 H 0.26 14.52 8.31 -92.70 -0.77 13.75 16 43 H 0.06 2.42 7.54 -2.39 -0.02 2.40 16 44 H 0.09 3.58 6.82 -2.38 -0.02 3.57 16 45 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 46 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 47 H 0.18 3.00 8.06 -2.91 -0.02 2.97 16 48 H 0.14 5.07 7.58 -2.91 -0.02 5.05 16 Total: -1.00 -67.80 384.44 -0.03 -67.83 By element: Atomic # 1 Polarization: 43.16 SS G_CDS: -2.58 Total: 40.59 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: 7.40 Total: 17.10 kcal Atomic # 7 Polarization: -135.76 SS G_CDS: -6.48 Total: -142.24 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -0.05 Total: -23.38 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 1.67 Total: 40.09 kcal Total: -67.80 -0.03 -67.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157730012.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.783 kcal (2) G-P(sol) polarization free energy of solvation -67.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds