Wall clock time and date at job start Tue Mar 31 2020 18:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00001 * 2 1 4 4 H 1.48494 * 109.46966 * 239.99642 * 3 2 1 5 5 H 1.48497 * 109.46939 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46991 * 119.99613 * 3 2 1 7 7 C 1.38818 * 119.99834 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99821 * 164.52774 * 7 2 1 9 9 N 1.36930 * 120.00010 * 344.53098 * 7 2 1 10 10 C 1.47010 * 121.37803 * 335.96214 * 9 7 2 11 11 C 1.50315 * 109.16947 * 222.97006 * 10 9 7 12 12 C 1.29460 * 123.65281 * 349.02545 * 11 10 9 13 13 C 1.50701 * 117.69510 * 180.85237 * 12 11 10 14 14 C 1.53000 * 109.46621 * 95.00003 * 13 12 11 15 15 N 1.46496 * 109.47094 * 179.97438 * 14 13 12 16 16 C 1.34773 * 120.00447 * 179.97438 * 15 14 13 17 17 O 1.21284 * 119.99720 * 0.02562 * 16 15 14 18 18 C 1.50701 * 120.00355 * 180.02562 * 16 15 14 19 19 C 1.53001 * 109.47198 * 180.02562 * 18 16 15 20 20 C 1.52998 * 109.46974 * 179.97438 * 19 18 16 21 21 N 1.46504 * 109.47118 * 179.97438 * 20 19 18 22 22 C 1.35312 * 125.86821 * 124.99687 * 21 20 19 23 23 C 1.35352 * 106.17572 * 179.97438 * 22 21 20 24 24 N 1.33768 * 106.49671 * 0.02562 * 23 22 21 25 25 N 1.28632 * 108.88681 * 359.97438 * 24 23 22 26 26 C 1.49972 * 124.60804 * 1.13664 * 12 11 10 27 27 C 1.47338 * 121.37416 * 155.98924 * 9 7 2 28 28 H 0.96993 * 119.99983 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.51921 * 103.06475 * 10 9 7 30 30 H 1.09004 * 109.51832 * 342.88157 * 10 9 7 31 31 H 1.08004 * 118.17829 * 168.99487 * 11 10 9 32 32 H 1.08994 * 109.46943 * 335.00639 * 13 12 11 33 33 H 1.09000 * 109.46852 * 214.99606 * 13 12 11 34 34 H 1.09006 * 109.47075 * 60.00259 * 14 13 12 35 35 H 1.09002 * 109.47493 * 300.00102 * 14 13 12 36 36 H 0.97003 * 120.00170 * 0.02562 * 15 14 13 37 37 H 1.08994 * 109.47046 * 59.99821 * 18 16 15 38 38 H 1.08998 * 109.47173 * 299.99883 * 18 16 15 39 39 H 1.09001 * 109.47251 * 59.99560 * 19 18 16 40 40 H 1.09002 * 109.47123 * 300.00011 * 19 18 16 41 41 H 1.09001 * 109.47402 * 59.99761 * 20 19 18 42 42 H 1.08998 * 109.47375 * 299.99524 * 20 19 18 43 43 H 1.08003 * 126.91415 * 359.97438 * 22 21 20 44 44 H 1.07999 * 126.74811 * 179.97438 * 23 22 21 45 45 H 1.08995 * 109.31510 * 101.01269 * 26 12 11 46 46 H 1.08994 * 109.30849 * 220.43696 * 26 12 11 47 47 H 1.09005 * 109.77825 * 237.78363 * 27 9 7 48 48 H 1.09000 * 109.78158 * 358.59508 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0609 -1.2193 -0.2490 9 7 1.3628 -2.3664 0.3173 10 6 0.1442 -2.3652 1.1397 11 6 0.2243 -3.4824 2.1422 12 6 1.1200 -4.4164 2.1056 13 6 1.0634 -5.4832 3.1686 14 6 0.2866 -6.6902 2.6387 15 7 0.2321 -7.7275 3.6717 16 6 -0.4066 -8.8889 3.4275 17 8 -0.9358 -9.0754 2.3523 18 6 -0.4632 -9.9558 4.4903 19 6 -1.2399 -11.1628 3.9605 20 6 -1.2968 -12.2462 5.0394 21 7 -2.0410 -13.4018 4.5323 22 6 -1.5922 -14.6776 4.4904 23 6 -2.5939 -15.4123 3.9532 24 7 -3.5932 -14.5611 3.6955 25 7 -3.2342 -13.3779 4.0502 26 6 2.2136 -4.5081 1.0835 27 6 1.8589 -3.6721 -0.1515 28 1 -0.4850 0.8400 -0.0004 29 1 -0.7267 -2.5111 0.5006 30 1 0.0584 -1.4124 1.6622 31 1 -0.5059 -3.5071 2.9377 32 1 0.5629 -5.0888 4.0528 33 1 2.0763 -5.7893 3.4303 34 1 0.7871 -7.0846 1.7543 35 1 -0.7262 -6.3840 2.3769 36 1 0.6550 -7.5782 4.5318 37 1 -0.9632 -9.5613 5.3748 38 1 0.5496 -10.2622 4.7518 39 1 -0.7395 -11.5572 3.0761 40 1 -2.2527 -10.8567 3.6987 41 1 -1.7969 -11.8521 5.9241 42 1 -0.2838 -12.5523 5.3008 43 1 -0.6285 -15.0373 4.8195 44 1 -2.5874 -16.4763 3.7681 45 1 3.1439 -4.1410 1.5169 46 1 2.3435 -5.5489 0.7870 47 1 1.0846 -4.1743 -0.7315 48 1 2.7476 -3.5299 -0.7664 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160330934.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:51 Heat of formation + Delta-G solvation = 90.195482 kcal Electronic energy + Delta-G solvation = -26878.033722 eV Core-core repulsion = 22970.928482 eV Total energy + Delta-G solvation = -3907.105240 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.59796 -40.00113 -37.95540 -36.39458 -35.44936 -33.62414 -33.05624 -31.42783 -31.37961 -29.90107 -29.10848 -27.81444 -25.38289 -23.87695 -23.07947 -22.85057 -22.39138 -21.54381 -21.02117 -20.46371 -18.26252 -17.62633 -17.15224 -16.78719 -16.30977 -16.25124 -15.59308 -15.43347 -15.20774 -14.92548 -14.61839 -14.11987 -14.04676 -13.99737 -13.59470 -13.41288 -12.97312 -12.84723 -12.58687 -12.39916 -12.22275 -12.02843 -12.01960 -11.59756 -11.50313 -11.43675 -11.24272 -11.03624 -10.90390 -10.72978 -10.52423 -10.35546 -10.30661 -10.06162 -9.81451 -9.77538 -9.55545 -9.22048 -8.65387 -7.93695 -6.72525 -5.78403 -3.17281 1.20995 1.88626 2.23560 2.40717 2.77182 3.08900 3.38712 3.44237 3.45305 3.83816 4.09212 4.12194 4.27740 4.49822 4.54964 4.57380 4.68017 4.72687 4.83292 4.95761 5.06830 5.16017 5.22947 5.25369 5.39669 5.43786 5.54254 5.62193 5.67597 5.77023 5.78887 5.97600 6.01827 6.12950 6.14875 6.19112 6.28558 6.38020 6.54652 6.78156 6.90171 7.22438 7.25900 7.32969 7.40267 7.74710 7.87511 8.00623 8.14994 8.39495 9.20888 9.83747 10.42525 11.31956 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.040016 B = 0.001459 C = 0.001449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.543593 B =19182.238346 C =19314.456368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.001 4.001 3 Si 0.905 3.095 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.247 4.247 8 H 0.068 0.932 9 N -0.595 5.595 10 C 0.196 3.804 11 C -0.145 4.145 12 C -0.144 4.144 13 C -0.091 4.091 14 C 0.123 3.877 15 N -0.730 5.730 16 C 0.508 3.492 17 O -0.536 6.536 18 C -0.137 4.137 19 C -0.119 4.119 20 C 0.114 3.886 21 N -0.290 5.290 22 C -0.053 4.053 23 C -0.053 4.053 24 N -0.273 5.273 25 N -0.079 5.079 26 C -0.091 4.091 27 C 0.143 3.857 28 H 0.254 0.746 29 H 0.038 0.962 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.399 0.601 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.190 0.810 44 H 0.189 0.811 45 H 0.062 0.938 46 H 0.052 0.948 47 H 0.024 0.976 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.223 -26.669 15.977 31.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.199 4.199 3 Si 0.735 3.265 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.376 4.376 8 H 0.085 0.915 9 N -0.318 5.318 10 C 0.071 3.929 11 C -0.165 4.165 12 C -0.145 4.145 13 C -0.128 4.128 14 C 0.000 4.000 15 N -0.382 5.382 16 C 0.294 3.706 17 O -0.412 6.412 18 C -0.178 4.178 19 C -0.158 4.158 20 C -0.007 4.007 21 N -0.084 5.084 22 C -0.204 4.204 23 C -0.211 4.211 24 N -0.139 5.139 25 N -0.059 5.059 26 C -0.130 4.130 27 C 0.016 3.984 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.233 0.767 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.099 0.901 40 H 0.111 0.889 41 H 0.120 0.880 42 H 0.126 0.874 43 H 0.207 0.793 44 H 0.206 0.794 45 H 0.081 0.919 46 H 0.070 0.930 47 H 0.042 0.958 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.519 -25.723 14.831 29.697 hybrid contribution 1.734 0.319 0.892 1.975 sum 2.252 -25.404 15.723 29.961 Atomic orbital electron populations 1.70007 1.05168 1.25583 1.54698 1.24992 0.95382 0.98262 1.01272 0.86323 0.78809 0.83317 0.78053 1.20935 1.21626 1.21129 1.19145 0.92183 0.84427 1.41875 0.91453 1.44120 1.29251 1.01133 1.57335 1.19710 0.88662 0.94753 0.89769 1.23130 0.96609 0.97359 0.99368 1.20231 0.99396 0.96623 0.98279 1.20900 0.99904 0.94153 0.97881 1.21461 1.01301 0.86736 0.90498 1.46119 1.56789 1.16715 1.18545 1.20486 0.78348 0.82936 0.88840 1.90769 1.45178 1.79536 1.25753 1.21549 1.02832 0.94673 0.98743 1.21612 1.03719 0.92977 0.97504 1.22206 0.96449 0.83753 0.98260 1.47533 1.11931 1.08497 1.40394 1.23723 1.03438 0.84429 1.08783 1.23663 0.91026 1.01747 1.04632 1.75159 1.25286 0.95737 1.17736 1.78361 0.96312 1.17672 1.13594 1.20788 0.96529 0.98962 0.96692 1.20993 0.97334 0.87251 0.92824 0.93571 0.94394 0.89136 0.89089 0.91558 0.91511 0.91271 0.91234 0.76703 0.88238 0.88439 0.90077 0.88944 0.87983 0.87420 0.79265 0.79370 0.91936 0.92979 0.95796 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.38 11.08 55.49 0.61 -25.77 16 2 C 0.00 -0.03 5.01 -17.43 -0.09 -0.12 16 3 Si 0.90 21.70 29.58 -169.99 -5.03 16.67 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.25 -6.80 9.71 -15.06 -0.15 -6.95 16 8 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 9 N -0.60 -15.06 3.01 -173.56 -0.52 -15.58 16 10 C 0.20 4.72 5.23 -5.10 -0.03 4.69 16 11 C -0.15 -2.77 9.47 -35.79 -0.34 -3.11 16 12 C -0.14 -2.43 5.11 -100.99 -0.52 -2.95 16 13 C -0.09 -1.10 5.32 -27.88 -0.15 -1.25 16 14 C 0.12 1.49 5.66 -4.04 -0.02 1.47 16 15 N -0.73 -6.50 5.56 -60.29 -0.33 -6.83 16 16 C 0.51 5.05 7.83 -10.99 -0.09 4.97 16 17 O -0.54 -8.12 15.98 5.55 0.09 -8.03 16 18 C -0.14 -0.64 5.70 -27.88 -0.16 -0.80 16 19 C -0.12 -0.75 4.63 -26.73 -0.12 -0.88 16 20 C 0.11 0.42 6.46 -4.04 -0.03 0.39 16 21 N -0.29 -2.14 3.44 -61.26 -0.21 -2.35 16 22 C -0.05 -0.29 11.57 -17.05 -0.20 -0.49 16 23 C -0.05 -0.40 12.05 -17.74 -0.21 -0.62 16 24 N -0.27 -3.20 12.41 30.23 0.38 -2.83 16 25 N -0.08 -0.90 12.91 60.35 0.78 -0.13 16 26 C -0.09 -1.58 5.95 -28.08 -0.17 -1.74 16 27 C 0.14 3.01 6.59 -3.43 -0.02 2.99 16 28 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.09 2.41 6.41 -51.93 -0.33 2.07 16 31 H 0.09 1.53 7.73 -52.48 -0.41 1.13 16 32 H 0.07 0.74 7.78 -51.93 -0.40 0.34 16 33 H 0.07 0.72 8.11 -51.93 -0.42 0.30 16 34 H 0.07 0.94 8.11 -51.93 -0.42 0.52 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.40 2.20 8.47 -40.82 -0.35 1.86 16 37 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 39 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 40 H 0.09 0.85 8.08 -51.93 -0.42 0.43 16 41 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.11 0.03 8.07 -51.93 -0.42 -0.39 16 43 H 0.19 0.22 8.06 -52.48 -0.42 -0.21 16 44 H 0.19 0.78 8.06 -52.49 -0.42 0.35 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 46 H 0.05 0.78 8.10 -51.93 -0.42 0.36 16 47 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.06 1.15 7.96 -51.93 -0.41 0.74 16 LS Contribution 397.78 15.07 5.99 5.99 Total: -1.00 -36.97 397.78 -8.30 -45.27 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -7.78 Total: -2.02 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -2.28 Total: -4.40 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 0.70 Total: -53.48 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: 0.09 Total: -8.03 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.97 -8.30 -45.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160330934.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.466 kcal (2) G-P(sol) polarization free energy of solvation -36.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds