Wall clock time and date at job start Tue Mar 31 2020 18:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00001 * 2 1 4 4 H 1.48494 * 109.46966 * 239.99642 * 3 2 1 5 5 H 1.48497 * 109.46939 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46991 * 119.99613 * 3 2 1 7 7 C 1.38818 * 119.99834 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99821 * 164.52774 * 7 2 1 9 9 N 1.36930 * 120.00010 * 344.53098 * 7 2 1 10 10 C 1.47010 * 121.37803 * 335.96214 * 9 7 2 11 11 C 1.50315 * 109.16947 * 222.97006 * 10 9 7 12 12 C 1.29460 * 123.65281 * 349.02545 * 11 10 9 13 13 C 1.50701 * 117.69510 * 180.85237 * 12 11 10 14 14 C 1.53000 * 109.46621 * 95.00003 * 13 12 11 15 15 N 1.46496 * 109.47094 * 179.97438 * 14 13 12 16 16 C 1.34773 * 120.00447 * 179.97438 * 15 14 13 17 17 O 1.21284 * 119.99720 * 0.02562 * 16 15 14 18 18 C 1.50701 * 120.00355 * 180.02562 * 16 15 14 19 19 C 1.53001 * 109.47198 * 180.02562 * 18 16 15 20 20 C 1.52998 * 109.46974 * 179.97438 * 19 18 16 21 21 N 1.46504 * 109.47118 * 179.97438 * 20 19 18 22 22 C 1.35312 * 125.86821 * 124.99687 * 21 20 19 23 23 C 1.35352 * 106.17572 * 179.97438 * 22 21 20 24 24 N 1.33768 * 106.49671 * 0.02562 * 23 22 21 25 25 N 1.28632 * 108.88681 * 359.97438 * 24 23 22 26 26 C 1.49972 * 124.60804 * 1.13664 * 12 11 10 27 27 C 1.47338 * 121.37416 * 155.98924 * 9 7 2 28 28 H 0.96993 * 119.99983 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.51921 * 103.06475 * 10 9 7 30 30 H 1.09004 * 109.51832 * 342.88157 * 10 9 7 31 31 H 1.08004 * 118.17829 * 168.99487 * 11 10 9 32 32 H 1.08994 * 109.46943 * 335.00639 * 13 12 11 33 33 H 1.09000 * 109.46852 * 214.99606 * 13 12 11 34 34 H 1.09006 * 109.47075 * 60.00259 * 14 13 12 35 35 H 1.09002 * 109.47493 * 300.00102 * 14 13 12 36 36 H 0.97003 * 120.00170 * 0.02562 * 15 14 13 37 37 H 1.08994 * 109.47046 * 59.99821 * 18 16 15 38 38 H 1.08998 * 109.47173 * 299.99883 * 18 16 15 39 39 H 1.09001 * 109.47251 * 59.99560 * 19 18 16 40 40 H 1.09002 * 109.47123 * 300.00011 * 19 18 16 41 41 H 1.09001 * 109.47402 * 59.99761 * 20 19 18 42 42 H 1.08998 * 109.47375 * 299.99524 * 20 19 18 43 43 H 1.08003 * 126.91415 * 359.97438 * 22 21 20 44 44 H 1.07999 * 126.74811 * 179.97438 * 23 22 21 45 45 H 1.08995 * 109.31510 * 101.01269 * 26 12 11 46 46 H 1.08994 * 109.30849 * 220.43696 * 26 12 11 47 47 H 1.09005 * 109.77825 * 237.78363 * 27 9 7 48 48 H 1.09000 * 109.78158 * 358.59508 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0609 -1.2193 -0.2490 9 7 1.3628 -2.3664 0.3173 10 6 0.1442 -2.3652 1.1397 11 6 0.2243 -3.4824 2.1422 12 6 1.1200 -4.4164 2.1056 13 6 1.0634 -5.4832 3.1686 14 6 0.2866 -6.6902 2.6387 15 7 0.2321 -7.7275 3.6717 16 6 -0.4066 -8.8889 3.4275 17 8 -0.9358 -9.0754 2.3523 18 6 -0.4632 -9.9558 4.4903 19 6 -1.2399 -11.1628 3.9605 20 6 -1.2968 -12.2462 5.0394 21 7 -2.0410 -13.4018 4.5323 22 6 -1.5922 -14.6776 4.4904 23 6 -2.5939 -15.4123 3.9532 24 7 -3.5932 -14.5611 3.6955 25 7 -3.2342 -13.3779 4.0502 26 6 2.2136 -4.5081 1.0835 27 6 1.8589 -3.6721 -0.1515 28 1 -0.4850 0.8400 -0.0004 29 1 -0.7267 -2.5111 0.5006 30 1 0.0584 -1.4124 1.6622 31 1 -0.5059 -3.5071 2.9377 32 1 0.5629 -5.0888 4.0528 33 1 2.0763 -5.7893 3.4303 34 1 0.7871 -7.0846 1.7543 35 1 -0.7262 -6.3840 2.3769 36 1 0.6550 -7.5782 4.5318 37 1 -0.9632 -9.5613 5.3748 38 1 0.5496 -10.2622 4.7518 39 1 -0.7395 -11.5572 3.0761 40 1 -2.2527 -10.8567 3.6987 41 1 -1.7969 -11.8521 5.9241 42 1 -0.2838 -12.5523 5.3008 43 1 -0.6285 -15.0373 4.8195 44 1 -2.5874 -16.4763 3.7681 45 1 3.1439 -4.1410 1.5169 46 1 2.3435 -5.5489 0.7870 47 1 1.0846 -4.1743 -0.7315 48 1 2.7476 -3.5299 -0.7664 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160330934.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:50 Heat of formation + Delta-G solvation = 63.420343 kcal Electronic energy + Delta-G solvation = -26879.194779 eV Core-core repulsion = 22970.928482 eV Total energy + Delta-G solvation = -3908.266297 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.13092 -40.81570 -39.47849 -37.01512 -36.54442 -35.10164 -33.68450 -33.09253 -31.91619 -31.50756 -30.39766 -28.57174 -26.97559 -24.91075 -24.35335 -23.74468 -23.38864 -22.46835 -22.05637 -21.26833 -19.47131 -18.77581 -17.85234 -17.50171 -17.32972 -17.06957 -16.87854 -16.75385 -16.01667 -15.76773 -15.72863 -15.38711 -15.26478 -15.03811 -14.77420 -14.68791 -14.28520 -13.92638 -13.48335 -13.39496 -13.26387 -13.11576 -12.89804 -12.80827 -12.75342 -12.57747 -12.54899 -12.35937 -12.20927 -11.99599 -11.89248 -11.74645 -11.68408 -11.27041 -11.07432 -10.88146 -10.68433 -10.29865 -10.09196 -9.49408 -8.76353 -7.88752 -5.31332 0.72199 1.40651 1.46301 1.48950 1.55157 1.55949 1.66722 1.67760 2.29582 2.50644 3.27875 3.50494 3.64607 3.69482 3.76521 3.88200 3.96066 4.06508 4.14552 4.21847 4.28118 4.30184 4.36912 4.38218 4.44722 4.54398 4.58149 4.66809 4.70622 4.81484 4.85414 4.90795 4.97387 5.03304 5.10428 5.17125 5.20230 5.22654 5.32350 5.40235 5.46715 5.49081 5.59622 5.75246 5.87359 6.27860 6.32497 6.61297 7.12066 7.32609 7.57365 7.82185 8.37334 9.19707 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.040016 B = 0.001459 C = 0.001449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.543593 B =19182.238346 C =19314.456368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.056 4.056 3 Si 0.973 3.027 4 H -0.275 1.275 5 H -0.295 1.295 6 H -0.276 1.276 7 C -0.261 4.261 8 H 0.072 0.928 9 N -0.614 5.614 10 C 0.206 3.794 11 C -0.176 4.176 12 C -0.122 4.122 13 C -0.076 4.076 14 C 0.131 3.869 15 N -0.715 5.715 16 C 0.500 3.500 17 O -0.599 6.599 18 C -0.122 4.122 19 C -0.115 4.115 20 C 0.112 3.888 21 N -0.289 5.289 22 C -0.031 4.031 23 C -0.074 4.074 24 N -0.324 5.324 25 N -0.134 5.134 26 C -0.086 4.086 27 C 0.134 3.866 28 H 0.249 0.751 29 H 0.000 1.000 30 H 0.055 0.945 31 H 0.113 0.887 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.054 0.946 35 H 0.042 0.958 36 H 0.421 0.579 37 H 0.132 0.868 38 H 0.142 0.858 39 H 0.056 0.944 40 H 0.050 0.950 41 H 0.120 0.880 42 H 0.157 0.843 43 H 0.241 0.759 44 H 0.214 0.786 45 H 0.071 0.929 46 H 0.085 0.915 47 H 0.015 0.985 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.713 -28.823 19.329 35.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.251 4.251 3 Si 0.800 3.200 4 H -0.201 1.201 5 H -0.221 1.221 6 H -0.202 1.202 7 C -0.391 4.391 8 H 0.090 0.910 9 N -0.339 5.339 10 C 0.081 3.919 11 C -0.195 4.195 12 C -0.123 4.123 13 C -0.114 4.114 14 C 0.006 3.994 15 N -0.368 5.368 16 C 0.288 3.712 17 O -0.480 6.480 18 C -0.162 4.162 19 C -0.154 4.154 20 C -0.008 4.008 21 N -0.083 5.083 22 C -0.183 4.183 23 C -0.232 4.232 24 N -0.189 5.189 25 N -0.113 5.113 26 C -0.125 4.125 27 C 0.009 3.991 28 H 0.058 0.942 29 H 0.017 0.983 30 H 0.074 0.926 31 H 0.131 0.869 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.259 0.741 37 H 0.150 0.850 38 H 0.160 0.840 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.138 0.862 42 H 0.175 0.825 43 H 0.258 0.742 44 H 0.231 0.769 45 H 0.089 0.911 46 H 0.103 0.897 47 H 0.033 0.967 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.034 -27.878 18.228 33.552 hybrid contribution 0.734 0.885 -0.218 1.170 sum 4.768 -26.993 18.011 32.799 Atomic orbital electron populations 1.70198 1.06719 1.25879 1.56084 1.25818 0.96166 1.01576 1.01522 0.85258 0.77434 0.78885 0.78386 1.20067 1.22081 1.20229 1.19527 0.92609 0.85621 1.41303 0.91036 1.44411 1.29409 1.02068 1.57974 1.19350 0.87218 0.95342 0.89995 1.22820 0.99512 0.97246 0.99924 1.20634 0.97073 0.96322 0.98263 1.20793 1.01871 0.92236 0.96491 1.21114 0.99527 0.87575 0.91149 1.45914 1.56495 1.15663 1.18704 1.21517 0.76817 0.83755 0.89114 1.90756 1.47751 1.80731 1.28766 1.21581 1.05428 0.91866 0.97290 1.21473 1.01276 0.94730 0.97925 1.22561 0.98805 0.82156 0.97235 1.47885 1.11081 1.10125 1.39206 1.24507 1.04386 0.83212 1.06204 1.24297 0.90933 1.02957 1.04991 1.75071 1.27677 0.96766 1.19344 1.78289 0.98740 1.17972 1.16324 1.20741 0.96860 0.99935 0.94943 1.21200 0.96983 0.86124 0.94841 0.94153 0.98270 0.92649 0.86929 0.89706 0.88552 0.92733 0.93985 0.74136 0.85043 0.83992 0.92533 0.93138 0.86163 0.82512 0.74246 0.76944 0.91084 0.89692 0.96690 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.13 11.08 21.65 0.24 -56.89 16 2 C -0.06 -3.20 5.01 84.86 0.43 -2.78 16 3 Si 0.97 45.39 29.58 68.60 2.03 47.42 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.26 -14.67 9.71 84.04 0.82 -13.85 16 8 H 0.07 3.86 7.88 -2.91 -0.02 3.84 16 9 N -0.61 -32.00 3.01 -703.01 -2.11 -34.11 16 10 C 0.21 10.45 5.23 85.42 0.45 10.90 16 11 C -0.18 -6.75 9.47 27.10 0.26 -6.49 16 12 C -0.12 -3.89 5.11 -15.14 -0.08 -3.96 16 13 C -0.08 -1.57 5.32 29.85 0.16 -1.41 16 14 C 0.13 2.91 5.66 86.38 0.49 3.39 16 15 N -0.71 -10.42 5.56 -463.06 -2.57 -12.99 16 16 C 0.50 8.96 7.83 87.66 0.69 9.65 16 17 O -0.60 -18.54 15.98 -3.04 -0.05 -18.59 16 18 C -0.12 -0.65 5.70 29.85 0.17 -0.48 16 19 C -0.11 -1.28 4.63 30.59 0.14 -1.14 16 20 C 0.11 0.42 6.46 86.38 0.56 0.98 16 21 N -0.29 -3.75 3.44 -347.73 -1.20 -4.95 16 22 C -0.03 -0.25 11.57 83.49 0.97 0.71 16 23 C -0.07 -1.03 12.05 83.73 1.01 -0.02 16 24 N -0.32 -7.89 12.41 -58.26 -0.72 -8.61 16 25 N -0.13 -3.15 12.91 37.02 0.48 -2.68 16 26 C -0.09 -2.81 5.95 29.72 0.18 -2.64 16 27 C 0.13 5.68 6.59 86.32 0.57 6.24 16 28 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 29 H 0.00 -0.02 8.14 -2.38 -0.02 -0.04 16 30 H 0.06 3.13 6.41 -2.39 -0.02 3.12 16 31 H 0.11 3.76 7.73 -2.91 -0.02 3.74 16 32 H 0.08 1.53 7.78 -2.39 -0.02 1.51 16 33 H 0.10 1.53 8.11 -2.39 -0.02 1.51 16 34 H 0.05 1.39 8.11 -2.38 -0.02 1.37 16 35 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.42 2.52 8.47 -92.71 -0.79 1.73 16 37 H 0.13 -0.03 8.14 -2.39 -0.02 -0.05 16 38 H 0.14 -0.39 8.14 -2.39 -0.02 -0.41 16 39 H 0.06 0.89 8.10 -2.39 -0.02 0.88 16 40 H 0.05 0.99 8.08 -2.39 -0.02 0.97 16 41 H 0.12 0.07 8.14 -2.39 -0.02 0.05 16 42 H 0.16 -0.92 8.07 -2.39 -0.02 -0.94 16 43 H 0.24 -0.82 8.06 -2.91 -0.02 -0.85 16 44 H 0.21 1.45 8.06 -2.91 -0.02 1.43 16 45 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 46 H 0.08 2.27 8.10 -2.39 -0.02 2.25 16 47 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 48 H 0.06 2.42 7.96 -2.39 -0.02 2.41 16 Total: -1.00 -91.40 397.78 3.05 -88.35 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: 0.17 Total: 3.95 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: 6.79 Total: -0.91 kcal Atomic # 7 Polarization: -114.34 SS G_CDS: -5.89 Total: -120.23 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.05 Total: -18.59 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -91.40 3.05 -88.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160330934.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.772 kcal (2) G-P(sol) polarization free energy of solvation -91.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds