Wall clock time and date at job start Tue Mar 31 2020 18:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 120.00150 * 2 1 4 4 H 1.48496 * 109.47187 * 270.00818 * 3 2 1 5 5 H 1.48507 * 109.46939 * 30.00495 * 3 2 1 6 6 H 1.48495 * 109.46778 * 150.00346 * 3 2 1 7 7 C 1.38813 * 119.99714 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99776 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00110 * 359.97438 * 7 2 1 10 10 C 1.46505 * 120.00043 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47246 * 175.59075 * 10 9 7 12 12 C 1.52999 * 115.55302 * 303.90645 * 11 10 9 13 13 C 1.52998 * 109.47131 * 278.03089 * 12 11 10 14 14 N 1.46500 * 109.47223 * 175.02347 * 13 12 11 15 15 C 1.34777 * 120.00141 * 180.02562 * 14 13 12 16 16 O 1.21288 * 119.99519 * 359.97438 * 15 14 13 17 17 C 1.50690 * 120.00146 * 179.97438 * 15 14 13 18 18 N 1.46505 * 109.47284 * 179.97438 * 17 15 14 19 19 C 1.35310 * 125.86618 * 125.00042 * 18 17 15 20 20 C 1.35356 * 106.17445 * 180.25027 * 19 18 17 21 21 C 1.50699 * 126.75092 * 179.77622 * 20 19 18 22 22 C 1.52992 * 117.50061 * 343.61769 * 21 20 19 23 23 C 1.52990 * 60.00490 * 252.51112 * 22 21 20 24 24 N 1.33771 * 106.49286 * 359.64159 * 20 19 18 25 25 N 1.28633 * 108.89063 * 0.36823 * 24 20 19 26 26 C 1.53002 * 117.51731 * 89.60316 * 11 10 9 27 27 C 1.53001 * 60.00000 * 107.48067 * 26 11 10 28 28 H 0.96996 * 119.99625 * 359.97438 * 1 2 3 29 29 H 0.97002 * 120.00242 * 0.02562 * 9 7 2 30 30 H 1.09004 * 109.46485 * 55.59488 * 10 9 7 31 31 H 1.08989 * 109.47159 * 295.59739 * 10 9 7 32 32 H 1.09004 * 109.47298 * 158.02606 * 12 11 10 33 33 H 1.09004 * 109.46935 * 38.03234 * 12 11 10 34 34 H 1.08997 * 109.47237 * 55.02433 * 13 12 11 35 35 H 1.08998 * 109.47087 * 295.02510 * 13 12 11 36 36 H 0.96996 * 120.00182 * 359.97438 * 14 13 12 37 37 H 1.09003 * 109.47478 * 60.00058 * 17 15 14 38 38 H 1.08998 * 109.47351 * 300.00148 * 17 15 14 39 39 H 1.08002 * 126.91838 * 359.97438 * 19 18 17 40 40 H 1.08997 * 115.54811 * 129.33169 * 21 20 19 41 41 H 1.09000 * 117.50100 * 0.02562 * 22 21 20 42 42 H 1.09001 * 117.49765 * 145.01854 * 22 21 20 43 43 H 1.08997 * 117.50375 * 252.51384 * 23 22 21 44 44 H 1.09002 * 117.51897 * 107.47446 * 23 22 21 45 45 H 1.08993 * 117.50382 * 214.97246 * 26 11 10 46 46 H 1.09011 * 117.49664 * 359.97438 * 26 11 10 47 47 H 1.08992 * 117.49994 * 252.51405 * 27 26 11 48 48 H 1.09001 * 117.49540 * 107.49179 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0676 -4.8177 0.1095 12 6 0.1329 -4.7741 1.3200 13 6 0.8608 -5.3280 2.5465 14 7 0.0094 -5.1771 3.7291 15 6 0.4467 -5.5979 4.9325 16 8 1.5450 -6.1020 5.0362 17 6 -0.4288 -5.4421 6.1490 18 7 0.2681 -5.9726 7.3235 19 6 0.5093 -5.3006 8.4728 20 6 1.1770 -6.1591 9.2786 21 6 1.6772 -5.8830 10.6730 22 6 1.7654 -4.4211 11.1154 23 6 3.0427 -5.2070 10.8128 24 7 1.3028 -7.3019 8.5946 25 7 0.7565 -7.1579 7.4390 26 6 0.5114 -5.3994 -1.1918 27 6 1.5332 -6.1924 -0.3744 28 1 -0.4849 0.8400 0.0004 29 1 0.3556 -2.3881 -0.0005 30 1 2.7432 -3.6815 0.8457 31 1 2.6235 -3.7491 -0.9289 32 1 -0.7513 -5.3788 1.1183 33 1 -0.1673 -3.7436 1.5103 34 1 1.7906 -4.7792 2.6958 35 1 1.0829 -6.3837 2.3911 36 1 -0.8688 -4.7736 3.6462 37 1 -1.3587 -5.9909 6.0002 38 1 -0.6509 -4.3863 6.3041 39 1 0.2297 -4.2824 8.6999 40 1 1.4017 -6.6213 11.4261 41 1 1.4612 -3.6589 10.3979 42 1 1.5476 -4.1972 12.1597 43 1 3.6653 -5.5003 11.6580 44 1 3.5793 -4.9624 9.8961 45 1 -0.5202 -5.7511 -1.1855 46 1 0.8509 -4.9548 -2.1274 47 1 2.5450 -6.2697 -0.7722 48 1 1.1737 -7.0658 0.1696 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165456481.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:17 Heat of formation + Delta-G solvation = 127.402186 kcal Electronic energy + Delta-G solvation = -27585.879211 eV Core-core repulsion = 23680.387375 eV Total energy + Delta-G solvation = -3905.491837 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.46333 -39.90894 -38.35244 -37.57228 -35.08600 -34.60111 -33.99871 -30.92309 -30.89040 -30.59139 -28.51796 -26.01358 -24.34254 -23.82757 -22.93130 -22.77634 -22.18099 -21.71583 -21.05532 -20.46071 -18.68921 -17.85416 -17.64410 -17.13178 -16.45317 -15.91415 -15.76588 -15.60273 -15.20552 -14.91352 -14.76317 -14.49312 -14.36099 -13.85029 -13.67883 -13.17591 -12.94961 -12.76025 -12.60115 -12.38591 -11.97824 -11.88488 -11.73471 -11.50715 -11.41146 -11.19266 -11.03687 -11.00161 -10.89236 -10.71429 -10.57029 -10.50961 -10.20027 -9.98566 -9.92008 -9.69702 -9.39160 -9.22052 -9.19488 -8.89691 -6.96094 -5.82233 -3.09910 1.35294 1.92033 2.28524 2.34301 2.92263 3.39449 3.45275 3.45930 3.46308 3.92274 3.99444 4.21092 4.31701 4.46352 4.51906 4.55430 4.56214 4.62755 4.90797 4.94904 5.02076 5.07137 5.08894 5.24792 5.30668 5.44896 5.49639 5.53311 5.55192 5.60150 5.68365 5.76658 5.84024 5.86539 5.93886 6.06492 6.09284 6.14774 6.23730 6.31267 6.37543 6.39668 6.51054 6.70723 6.77876 7.22650 7.65847 7.92259 8.37248 8.38442 9.48960 10.06517 10.42359 11.40676 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010433 B = 0.002380 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2683.194344 B =11761.808575 C =13696.197695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.728 5.728 10 C 0.187 3.813 11 C -0.119 4.119 12 C -0.092 4.092 13 C 0.127 3.873 14 N -0.719 5.719 15 C 0.499 3.501 16 O -0.511 6.511 17 C 0.095 3.905 18 N -0.281 5.281 19 C -0.047 4.047 20 C 0.009 3.991 21 C -0.072 4.072 22 C -0.170 4.170 23 C -0.165 4.165 24 N -0.265 5.265 25 N -0.052 5.052 26 C -0.166 4.166 27 C -0.178 4.178 28 H 0.254 0.746 29 H 0.384 0.616 30 H 0.026 0.974 31 H 0.018 0.982 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.403 0.597 37 H 0.130 0.870 38 H 0.137 0.863 39 H 0.190 0.810 40 H 0.121 0.879 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.096 0.904 45 H 0.089 0.911 46 H 0.095 0.905 47 H 0.093 0.907 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.606 -11.290 16.496 20.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.372 5.372 10 C 0.060 3.940 11 C -0.120 4.120 12 C -0.129 4.129 13 C 0.004 3.996 14 N -0.371 5.371 15 C 0.281 3.719 16 O -0.385 6.385 17 C -0.030 4.030 18 N -0.074 5.074 19 C -0.197 4.197 20 C -0.129 4.129 21 C -0.092 4.092 22 C -0.208 4.208 23 C -0.203 4.203 24 N -0.132 5.132 25 N -0.031 5.031 26 C -0.203 4.203 27 C -0.215 4.215 28 H 0.064 0.936 29 H 0.218 0.782 30 H 0.043 0.957 31 H 0.036 0.964 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.238 0.762 37 H 0.148 0.852 38 H 0.155 0.845 39 H 0.207 0.793 40 H 0.139 0.861 41 H 0.115 0.885 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.115 0.885 45 H 0.107 0.893 46 H 0.113 0.887 47 H 0.111 0.889 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.461 -12.902 15.837 20.718 hybrid contribution -0.577 2.365 0.140 2.438 sum -4.038 -10.537 15.977 19.560 Atomic orbital electron populations 1.69656 1.05053 1.25582 1.58054 1.24710 0.95532 0.97605 1.03131 0.86204 0.78694 0.83840 0.77568 1.21724 1.21788 1.20778 1.19237 0.91054 0.84162 1.42367 0.91267 1.42305 1.05856 0.99667 1.89364 1.20182 0.91886 0.84178 0.97797 1.21558 1.00927 0.94967 0.94583 1.21267 0.96772 1.02979 0.91931 1.21417 0.94146 1.01243 0.82772 1.45892 1.21182 1.62595 1.07474 1.20141 0.87691 0.79651 0.84373 1.90850 1.20470 1.42067 1.85075 1.21911 0.95776 1.03045 0.82312 1.46706 1.38309 1.10329 1.12034 1.23264 1.07403 1.01581 0.87449 1.20984 1.03149 0.91382 0.97340 1.19981 1.01373 0.96613 0.91205 1.23020 1.02022 0.93208 1.02525 1.23012 0.90485 1.03089 1.03681 1.75073 1.16873 1.22439 0.98841 1.78445 1.10586 1.00318 1.13778 1.23000 0.98248 1.03406 0.95604 1.22974 0.99736 0.94410 1.04392 0.93583 0.78161 0.95663 0.96391 0.91863 0.89113 0.90733 0.91488 0.76242 0.85212 0.84474 0.79322 0.86083 0.88546 0.87940 0.88054 0.88548 0.89278 0.88658 0.88899 0.89174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.22 13.06 55.49 0.72 -26.50 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.24 -6.47 9.99 -15.06 -0.15 -6.62 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.73 -17.60 5.23 -59.91 -0.31 -17.92 16 10 C 0.19 3.67 6.15 -4.04 -0.02 3.65 16 11 C -0.12 -1.82 1.65 -154.51 -0.25 -2.07 16 12 C -0.09 -1.23 5.20 -26.73 -0.14 -1.37 16 13 C 0.13 1.67 5.49 -4.04 -0.02 1.65 16 14 N -0.72 -7.58 5.56 -60.30 -0.33 -7.92 16 15 C 0.50 5.98 7.84 -10.99 -0.09 5.89 16 16 O -0.51 -8.83 15.68 5.55 0.09 -8.75 16 17 C 0.10 0.73 6.94 -5.20 -0.04 0.70 16 18 N -0.28 -3.21 3.20 -62.44 -0.20 -3.41 16 19 C -0.05 -0.46 10.89 -17.05 -0.19 -0.65 16 20 C 0.01 0.10 6.88 -82.78 -0.57 -0.47 16 21 C -0.07 -0.62 6.33 -91.77 -0.58 -1.20 16 22 C -0.17 -1.07 10.02 -26.74 -0.27 -1.34 16 23 C -0.17 -1.29 10.23 -26.73 -0.27 -1.57 16 24 N -0.27 -4.03 12.41 33.29 0.41 -3.62 16 25 N -0.05 -0.79 12.13 60.35 0.73 -0.06 16 26 C -0.17 -2.30 9.87 -26.73 -0.26 -2.56 16 27 C -0.18 -2.28 9.57 -26.73 -0.26 -2.54 16 28 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.38 9.64 6.80 -40.82 -0.28 9.36 16 30 H 0.03 0.52 7.96 -51.93 -0.41 0.10 16 31 H 0.02 0.37 8.10 -51.94 -0.42 -0.05 16 32 H 0.06 0.72 7.93 -51.93 -0.41 0.31 16 33 H 0.09 1.43 6.94 -51.93 -0.36 1.07 16 34 H 0.07 1.18 7.96 -51.93 -0.41 0.77 16 35 H 0.07 0.89 7.72 -51.93 -0.40 0.49 16 36 H 0.40 2.97 8.47 -40.82 -0.35 2.63 16 37 H 0.13 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.14 0.54 8.07 -51.93 -0.42 0.12 16 39 H 0.19 1.08 7.45 -52.49 -0.39 0.69 16 40 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.10 0.55 7.23 -51.93 -0.38 0.18 16 42 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.09 1.10 8.07 -51.93 -0.42 0.68 16 46 H 0.09 1.41 8.14 -51.92 -0.42 0.99 16 47 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 48 H 0.09 1.03 7.90 -51.93 -0.41 0.62 16 LS Contribution 404.43 15.07 6.09 6.09 Total: -1.00 -36.72 404.43 -8.59 -45.31 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -7.56 Total: 8.77 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -3.21 Total: -9.00 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: 1.02 Total: -59.42 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.09 Total: -8.75 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.72 -8.59 -45.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165456481.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.716 kcal (2) G-P(sol) polarization free energy of solvation -36.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds