Wall clock time and date at job start Tue Mar 31 2020 18:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 120.00150 * 2 1 4 4 H 1.48496 * 109.47187 * 270.00818 * 3 2 1 5 5 H 1.48507 * 109.46939 * 30.00495 * 3 2 1 6 6 H 1.48495 * 109.46778 * 150.00346 * 3 2 1 7 7 C 1.38813 * 119.99714 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99776 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00110 * 359.97438 * 7 2 1 10 10 C 1.46505 * 120.00043 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47246 * 175.59075 * 10 9 7 12 12 C 1.52999 * 115.55302 * 303.90645 * 11 10 9 13 13 C 1.52998 * 109.47131 * 278.03089 * 12 11 10 14 14 N 1.46500 * 109.47223 * 175.02347 * 13 12 11 15 15 C 1.34777 * 120.00141 * 180.02562 * 14 13 12 16 16 O 1.21288 * 119.99519 * 359.97438 * 15 14 13 17 17 C 1.50690 * 120.00146 * 179.97438 * 15 14 13 18 18 N 1.46505 * 109.47284 * 179.97438 * 17 15 14 19 19 C 1.35310 * 125.86618 * 125.00042 * 18 17 15 20 20 C 1.35356 * 106.17445 * 180.25027 * 19 18 17 21 21 C 1.50699 * 126.75092 * 179.77622 * 20 19 18 22 22 C 1.52992 * 117.50061 * 343.61769 * 21 20 19 23 23 C 1.52990 * 60.00490 * 252.51112 * 22 21 20 24 24 N 1.33771 * 106.49286 * 359.64159 * 20 19 18 25 25 N 1.28633 * 108.89063 * 0.36823 * 24 20 19 26 26 C 1.53002 * 117.51731 * 89.60316 * 11 10 9 27 27 C 1.53001 * 60.00000 * 107.48067 * 26 11 10 28 28 H 0.96996 * 119.99625 * 359.97438 * 1 2 3 29 29 H 0.97002 * 120.00242 * 0.02562 * 9 7 2 30 30 H 1.09004 * 109.46485 * 55.59488 * 10 9 7 31 31 H 1.08989 * 109.47159 * 295.59739 * 10 9 7 32 32 H 1.09004 * 109.47298 * 158.02606 * 12 11 10 33 33 H 1.09004 * 109.46935 * 38.03234 * 12 11 10 34 34 H 1.08997 * 109.47237 * 55.02433 * 13 12 11 35 35 H 1.08998 * 109.47087 * 295.02510 * 13 12 11 36 36 H 0.96996 * 120.00182 * 359.97438 * 14 13 12 37 37 H 1.09003 * 109.47478 * 60.00058 * 17 15 14 38 38 H 1.08998 * 109.47351 * 300.00148 * 17 15 14 39 39 H 1.08002 * 126.91838 * 359.97438 * 19 18 17 40 40 H 1.08997 * 115.54811 * 129.33169 * 21 20 19 41 41 H 1.09000 * 117.50100 * 0.02562 * 22 21 20 42 42 H 1.09001 * 117.49765 * 145.01854 * 22 21 20 43 43 H 1.08997 * 117.50375 * 252.51384 * 23 22 21 44 44 H 1.09002 * 117.51897 * 107.47446 * 23 22 21 45 45 H 1.08993 * 117.50382 * 214.97246 * 26 11 10 46 46 H 1.09011 * 117.49664 * 359.97438 * 26 11 10 47 47 H 1.08992 * 117.49994 * 252.51405 * 27 26 11 48 48 H 1.09001 * 117.49540 * 107.49179 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0676 -4.8177 0.1095 12 6 0.1329 -4.7741 1.3200 13 6 0.8608 -5.3280 2.5465 14 7 0.0094 -5.1771 3.7291 15 6 0.4467 -5.5979 4.9325 16 8 1.5450 -6.1020 5.0362 17 6 -0.4288 -5.4421 6.1490 18 7 0.2681 -5.9726 7.3235 19 6 0.5093 -5.3006 8.4728 20 6 1.1770 -6.1591 9.2786 21 6 1.6772 -5.8830 10.6730 22 6 1.7654 -4.4211 11.1154 23 6 3.0427 -5.2070 10.8128 24 7 1.3028 -7.3019 8.5946 25 7 0.7565 -7.1579 7.4390 26 6 0.5114 -5.3994 -1.1918 27 6 1.5332 -6.1924 -0.3744 28 1 -0.4849 0.8400 0.0004 29 1 0.3556 -2.3881 -0.0005 30 1 2.7432 -3.6815 0.8457 31 1 2.6235 -3.7491 -0.9289 32 1 -0.7513 -5.3788 1.1183 33 1 -0.1673 -3.7436 1.5103 34 1 1.7906 -4.7792 2.6958 35 1 1.0829 -6.3837 2.3911 36 1 -0.8688 -4.7736 3.6462 37 1 -1.3587 -5.9909 6.0002 38 1 -0.6509 -4.3863 6.3041 39 1 0.2297 -4.2824 8.6999 40 1 1.4017 -6.6213 11.4261 41 1 1.4612 -3.6589 10.3979 42 1 1.5476 -4.1972 12.1597 43 1 3.6653 -5.5003 11.6580 44 1 3.5793 -4.9624 9.8961 45 1 -0.5202 -5.7511 -1.1855 46 1 0.8509 -4.9548 -2.1274 47 1 2.5450 -6.2697 -0.7722 48 1 1.1737 -7.0658 0.1696 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165456481.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:16 Heat of formation + Delta-G solvation = 101.431134 kcal Electronic energy + Delta-G solvation = -27587.005401 eV Core-core repulsion = 23680.387375 eV Total energy + Delta-G solvation = -3906.618026 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.30736 -40.90216 -39.56569 -38.18058 -36.20496 -35.79945 -35.46607 -32.80229 -31.73697 -31.64840 -29.37532 -27.79316 -25.06456 -24.90488 -24.62248 -23.65158 -23.11362 -22.67083 -21.89547 -21.28725 -19.98599 -19.08821 -18.62108 -18.50154 -17.29323 -16.98288 -16.69747 -16.63333 -16.32380 -16.17984 -15.79845 -15.51006 -15.37166 -15.14318 -14.89987 -14.71039 -14.33046 -13.95539 -13.69226 -13.33882 -13.17274 -13.03109 -12.80872 -12.61045 -12.54674 -12.31869 -12.29545 -12.20903 -12.12722 -11.95023 -11.87552 -11.73713 -11.44631 -11.21163 -11.11307 -10.94208 -10.85058 -10.55335 -10.20850 -10.00479 -8.97900 -7.95601 -5.22799 0.54340 1.23089 1.39381 1.46587 1.46885 1.47464 1.55725 2.07255 2.53747 2.86069 2.87831 3.25242 3.37506 3.49650 3.73385 3.81985 3.82915 3.89124 3.96324 3.98787 4.00435 4.05113 4.08456 4.24183 4.25918 4.37749 4.39527 4.45852 4.62763 4.76361 4.82606 4.83591 4.91945 4.95773 4.96806 5.06542 5.15464 5.17985 5.21940 5.25473 5.28952 5.32143 5.34489 5.37255 5.48663 5.52439 6.27329 6.38814 7.07241 7.34834 7.49394 8.09600 8.36970 9.27393 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010433 B = 0.002380 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2683.194344 B =11761.808575 C =13696.197695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.068 4.068 3 Si 0.967 3.033 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.275 1.275 7 C -0.247 4.247 8 H 0.067 0.933 9 N -0.734 5.734 10 C 0.187 3.813 11 C -0.140 4.140 12 C -0.077 4.077 13 C 0.136 3.864 14 N -0.706 5.706 15 C 0.495 3.505 16 O -0.572 6.572 17 C 0.095 3.905 18 N -0.280 5.280 19 C -0.034 4.034 20 C -0.009 4.009 21 C -0.089 4.089 22 C -0.143 4.143 23 C -0.177 4.177 24 N -0.309 5.309 25 N -0.100 5.100 26 C -0.162 4.162 27 C -0.156 4.156 28 H 0.252 0.748 29 H 0.379 0.621 30 H 0.014 0.986 31 H 0.011 0.989 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.039 0.961 35 H 0.068 0.932 36 H 0.421 0.579 37 H 0.167 0.833 38 H 0.185 0.815 39 H 0.234 0.766 40 H 0.124 0.876 41 H 0.107 0.893 42 H 0.125 0.875 43 H 0.113 0.887 44 H 0.076 0.924 45 H 0.111 0.889 46 H 0.082 0.918 47 H 0.093 0.907 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.144 -10.505 17.413 21.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.261 4.261 3 Si 0.797 3.203 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.200 1.200 7 C -0.379 4.379 8 H 0.085 0.915 9 N -0.377 5.377 10 C 0.061 3.939 11 C -0.141 4.141 12 C -0.115 4.115 13 C 0.012 3.988 14 N -0.359 5.359 15 C 0.280 3.720 16 O -0.450 6.450 17 C -0.029 4.029 18 N -0.073 5.073 19 C -0.184 4.184 20 C -0.147 4.147 21 C -0.109 4.109 22 C -0.180 4.180 23 C -0.215 4.215 24 N -0.175 5.175 25 N -0.079 5.079 26 C -0.199 4.199 27 C -0.193 4.193 28 H 0.061 0.939 29 H 0.212 0.788 30 H 0.032 0.968 31 H 0.029 0.971 32 H 0.111 0.889 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.259 0.741 37 H 0.184 0.816 38 H 0.202 0.798 39 H 0.250 0.750 40 H 0.142 0.858 41 H 0.125 0.875 42 H 0.143 0.857 43 H 0.132 0.868 44 H 0.094 0.906 45 H 0.129 0.871 46 H 0.100 0.900 47 H 0.112 0.888 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.018 -12.139 16.729 21.269 hybrid contribution -0.049 2.123 -0.180 2.132 sum -5.067 -10.016 16.548 19.996 Atomic orbital electron populations 1.69783 1.06204 1.26029 1.59292 1.25436 0.96415 1.00570 1.03649 0.85235 0.77716 0.79988 0.77385 1.21592 1.21728 1.20033 1.19559 0.91244 0.85599 1.41474 0.91527 1.42413 1.05692 1.00442 1.89127 1.20214 0.92686 0.84317 0.96693 1.21423 1.01419 0.94757 0.96489 1.21113 0.97257 1.01961 0.91121 1.21145 0.93261 1.00600 0.83757 1.45748 1.21545 1.62033 1.06606 1.20894 0.87327 0.78163 0.85581 1.90833 1.23329 1.44815 1.86030 1.22343 0.95174 1.06264 0.79090 1.47011 1.37533 1.09609 1.13191 1.23966 1.05485 1.02719 0.86275 1.21585 1.03546 0.90947 0.98666 1.20089 1.02115 0.98603 0.90057 1.23159 0.99367 0.91550 1.03971 1.23041 0.90880 1.04178 1.03374 1.74990 1.18121 1.24767 0.99632 1.78357 1.12745 1.02501 1.14264 1.23061 0.99696 1.02953 0.94158 1.23042 0.99730 0.93503 1.03033 0.93895 0.78826 0.96814 0.97072 0.88863 0.91607 0.94241 0.91363 0.74090 0.81606 0.79822 0.74951 0.85774 0.87512 0.85727 0.86829 0.90554 0.87115 0.89973 0.88831 0.86947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.31 13.06 21.65 0.28 -56.02 16 2 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 3 Si 0.97 45.26 29.55 68.60 2.03 47.28 16 4 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 5 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 7 C -0.25 -13.63 9.99 84.03 0.84 -12.79 16 8 H 0.07 3.63 7.83 -2.91 -0.02 3.60 16 9 N -0.73 -36.06 5.23 -343.46 -1.79 -37.85 16 10 C 0.19 7.50 6.15 86.38 0.53 8.03 16 11 C -0.14 -4.16 1.65 -52.18 -0.09 -4.24 16 12 C -0.08 -1.97 5.20 30.59 0.16 -1.81 16 13 C 0.14 3.52 5.49 86.38 0.47 4.00 16 14 N -0.71 -13.88 5.56 -463.07 -2.57 -16.45 16 15 C 0.50 11.36 7.84 87.65 0.69 12.05 16 16 O -0.57 -20.25 15.68 -3.05 -0.05 -20.30 16 17 C 0.09 1.19 6.94 85.63 0.59 1.78 16 18 N -0.28 -6.02 3.20 -351.47 -1.12 -7.15 16 19 C -0.03 -0.60 10.89 83.49 0.91 0.31 16 20 C -0.01 -0.22 6.88 41.60 0.29 0.07 16 21 C -0.09 -1.46 6.33 -11.54 -0.07 -1.53 16 22 C -0.14 -1.43 10.02 30.59 0.31 -1.12 16 23 C -0.18 -2.65 10.23 30.59 0.31 -2.34 16 24 N -0.31 -9.74 12.41 -48.60 -0.60 -10.34 16 25 N -0.10 -3.10 12.13 37.02 0.45 -2.65 16 26 C -0.16 -4.20 9.87 30.60 0.30 -3.90 16 27 C -0.16 -3.71 9.57 30.59 0.29 -3.42 16 28 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 29 H 0.38 19.27 6.80 -92.71 -0.63 18.64 16 30 H 0.01 0.58 7.96 -2.38 -0.02 0.57 16 31 H 0.01 0.47 8.10 -2.39 -0.02 0.45 16 32 H 0.09 1.85 7.93 -2.38 -0.02 1.83 16 33 H 0.07 2.05 6.94 -2.38 -0.02 2.03 16 34 H 0.04 1.30 7.96 -2.39 -0.02 1.28 16 35 H 0.07 1.76 7.72 -2.39 -0.02 1.74 16 36 H 0.42 5.14 8.47 -92.71 -0.79 4.36 16 37 H 0.17 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.18 0.56 8.07 -2.39 -0.02 0.54 16 39 H 0.23 1.65 7.45 -2.91 -0.02 1.63 16 40 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.11 0.84 7.23 -2.39 -0.02 0.83 16 42 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.11 2.40 8.07 -2.39 -0.02 2.39 16 46 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 47 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 48 H 0.11 2.23 7.90 -2.39 -0.02 2.21 16 Total: -1.00 -84.74 404.43 2.19 -82.55 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: -0.43 Total: 29.19 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: 6.00 Total: -8.26 kcal Atomic # 7 Polarization: -125.11 SS G_CDS: -5.36 Total: -130.47 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.05 Total: -20.30 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -84.74 2.19 -82.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165456481.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.986 kcal (2) G-P(sol) polarization free energy of solvation -84.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds