Wall clock time and date at job start Tue Mar 31 2020 17:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86805 * 120.00021 * 2 1 4 4 H 1.48499 * 109.47045 * 274.54318 * 3 2 1 5 5 H 1.48499 * 109.46981 * 34.53957 * 3 2 1 6 6 H 1.48493 * 109.47160 * 154.54174 * 3 2 1 7 7 C 1.38812 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00305 * 354.55980 * 7 2 1 9 9 N 1.36935 * 119.99490 * 174.83163 * 7 2 1 10 10 C 1.46503 * 119.99519 * 184.61593 * 9 7 2 11 11 C 1.53004 * 109.46864 * 174.92390 * 10 9 7 12 12 C 1.53001 * 115.54912 * 303.23265 * 11 10 9 13 13 C 1.52996 * 109.47587 * 294.71458 * 12 11 10 14 14 N 1.46491 * 109.47559 * 185.39380 * 13 12 11 15 15 C 1.34774 * 120.00541 * 184.95030 * 14 13 12 16 16 O 1.21282 * 119.99682 * 5.03213 * 15 14 13 17 17 C 1.50704 * 120.00534 * 185.03846 * 15 14 13 18 18 H 1.08998 * 109.68660 * 300.54140 * 17 15 14 19 19 C 1.53429 * 109.69529 * 179.97438 * 17 15 14 20 20 C 1.53103 * 109.55501 * 190.55817 * 19 17 15 21 21 C 1.53423 * 109.58403 * 70.05233 * 20 19 17 22 22 C 1.50597 * 108.33016 * 310.17620 * 21 20 19 23 23 N 1.32913 * 129.16439 * 196.52836 * 22 21 20 24 24 N 1.29007 * 108.63879 * 179.83498 * 23 22 21 25 25 N 1.29113 * 110.26254 * 0.09884 * 24 23 22 26 26 H 0.97000 * 126.00923 * 180.02562 * 25 24 23 27 27 C 1.34395 * 107.97862 * 0.02562 * 25 24 23 28 28 C 1.53001 * 117.49976 * 157.56838 * 11 10 9 29 29 C 1.52997 * 117.50043 * 88.91118 * 11 10 9 30 30 H 0.97008 * 120.00542 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00909 * 4.61612 * 9 7 2 32 32 H 1.09004 * 109.47182 * 294.91559 * 10 9 7 33 33 H 1.08996 * 109.47537 * 54.92617 * 10 9 7 34 34 H 1.09000 * 109.46817 * 54.71488 * 12 11 10 35 35 H 1.09005 * 109.47167 * 174.71005 * 12 11 10 36 36 H 1.09004 * 109.47207 * 305.39454 * 13 12 11 37 37 H 1.09001 * 109.47000 * 65.38778 * 13 12 11 38 38 H 0.97002 * 120.00190 * 4.94244 * 14 13 12 39 39 H 1.08997 * 109.45623 * 310.58188 * 19 17 15 40 40 H 1.09001 * 109.46048 * 70.54603 * 19 17 15 41 41 H 1.09001 * 109.45375 * 190.08386 * 20 19 17 42 42 H 1.09004 * 109.45588 * 310.01440 * 20 19 17 43 43 H 1.08996 * 109.69395 * 69.89074 * 21 20 19 44 44 H 1.09003 * 109.69105 * 190.42978 * 21 20 19 45 45 H 1.09001 * 117.50046 * 359.97438 * 28 11 10 46 46 H 1.09000 * 117.50255 * 145.01311 * 28 11 10 47 47 H 1.09003 * 117.49320 * 214.98001 * 29 11 10 48 48 H 1.08998 * 117.49866 * 359.97062 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4016 2.1019 -1.3957 5 1 1.4989 2.6231 0.7938 6 1 3.5924 1.4144 0.6018 7 6 2.0102 -1.2022 0.0005 8 1 1.4738 -2.1353 0.0896 9 7 3.3753 -1.2045 -0.1063 10 6 4.0999 -2.4738 -0.2076 11 6 5.5860 -2.1954 -0.4421 12 6 5.9118 -1.3421 -1.6695 13 6 5.5204 -2.1026 -2.9381 14 7 5.9490 -1.3428 -4.1149 15 6 5.6218 -1.7718 -5.3500 16 8 4.8966 -2.7344 -5.4852 17 6 6.1571 -1.0554 -6.5630 18 1 5.8346 -0.0143 -6.5467 19 6 5.6400 -1.7374 -7.8364 20 6 6.3847 -1.1824 -9.0535 21 6 7.8398 -1.6682 -9.0317 22 6 8.4099 -1.3948 -7.6648 23 7 9.6804 -1.3673 -7.2754 24 7 9.7198 -1.0897 -6.0162 25 7 8.5239 -0.9342 -5.5550 26 1 8.2895 -0.7201 -4.6384 27 6 7.6610 -1.1211 -6.5682 28 6 6.5793 -3.2956 -0.0628 29 6 6.4767 -2.0291 0.7907 30 1 -0.4851 0.8401 0.0004 31 1 3.8627 -0.3659 -0.1149 32 1 3.9774 -3.0370 0.7176 33 1 3.7029 -3.0533 -1.0410 34 1 5.3542 -0.4067 -1.6201 35 1 6.9803 -1.1274 -1.6896 36 1 6.0045 -3.0793 -2.9401 37 1 4.4386 -2.2333 -2.9641 38 1 6.4683 -0.5309 -4.0053 39 1 5.8085 -2.8120 -7.7667 40 1 4.5728 -1.5435 -7.9444 41 1 5.8996 -1.5302 -9.9656 42 1 6.3653 -0.0929 -9.0253 43 1 7.8729 -2.7383 -9.2361 44 1 8.4173 -1.1324 -9.7850 45 1 6.1741 -4.2175 0.3542 46 1 7.4650 -3.4112 -0.6874 47 1 7.2950 -1.3118 0.7271 48 1 6.0039 -2.1175 1.7688 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166875344.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:01 Heat of formation + Delta-G solvation = 83.475581 kcal Electronic energy + Delta-G solvation = -28947.906131 eV Core-core repulsion = 25040.509494 eV Total energy + Delta-G solvation = -3907.396637 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.91353 -40.21780 -38.59216 -37.16929 -35.22096 -34.26303 -34.13843 -31.36673 -31.15811 -30.50389 -29.92378 -26.43694 -25.33589 -23.92998 -23.32574 -22.82428 -22.42791 -21.89188 -21.23928 -19.97640 -19.09987 -18.51839 -17.61153 -17.35091 -16.60884 -16.20109 -15.98280 -15.46490 -15.01535 -14.75748 -14.51567 -14.29365 -14.23946 -14.16390 -13.78274 -13.52153 -13.23937 -12.87017 -12.62751 -12.44954 -12.20098 -11.98857 -11.79033 -11.74482 -11.64656 -11.45467 -11.41986 -11.34329 -11.07004 -11.00843 -10.85301 -10.74278 -10.29726 -10.14825 -9.99702 -9.74652 -9.54085 -9.33658 -9.26431 -8.91746 -7.27021 -5.81614 -3.16677 1.07514 2.06870 2.16108 2.36833 2.78787 3.29318 3.31405 3.38642 3.79007 3.83047 3.95216 4.18245 4.31982 4.46045 4.53096 4.71290 4.73935 4.81083 4.82784 4.87263 4.91143 4.99528 5.03493 5.14786 5.26062 5.44105 5.45114 5.47392 5.52856 5.53762 5.62241 5.63955 5.69155 5.72885 5.84611 5.92169 5.96009 5.98285 6.15238 6.17707 6.19952 6.23047 6.34293 6.59240 6.63070 7.07490 7.84337 7.96072 8.04107 8.37669 9.16922 9.88929 10.09727 11.36846 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012954 B = 0.003036 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.017331 B = 9219.556679 C =10256.025139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.882 3.118 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.090 0.910 9 N -0.751 5.751 10 C 0.192 3.808 11 C -0.127 4.127 12 C -0.090 4.090 13 C 0.120 3.880 14 N -0.735 5.735 15 C 0.514 3.486 16 O -0.513 6.513 17 C -0.033 4.033 18 H 0.120 0.880 19 C -0.099 4.099 20 C -0.120 4.120 21 C -0.037 4.037 22 C -0.003 4.003 23 N -0.257 5.257 24 N -0.081 5.081 25 N -0.380 5.380 26 H 0.444 0.556 27 C -0.011 4.011 28 C -0.172 4.172 29 C -0.168 4.168 30 H 0.259 0.741 31 H 0.360 0.640 32 H 0.025 0.975 33 H 0.037 0.963 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.389 0.611 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.095 0.905 46 H 0.090 0.910 47 H 0.088 0.912 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.153 -1.316 -14.840 23.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.190 4.190 3 Si 0.712 3.288 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.373 4.373 8 H 0.107 0.893 9 N -0.397 5.397 10 C 0.065 3.935 11 C -0.128 4.128 12 C -0.128 4.128 13 C -0.003 4.003 14 N -0.387 5.387 15 C 0.299 3.701 16 O -0.386 6.386 17 C -0.056 4.056 18 H 0.138 0.862 19 C -0.137 4.137 20 C -0.158 4.158 21 C -0.076 4.076 22 C -0.143 4.143 23 N -0.123 5.123 24 N -0.060 5.060 25 N -0.100 5.100 26 H 0.291 0.709 27 C -0.146 4.146 28 C -0.210 4.210 29 C -0.205 4.205 30 H 0.069 0.931 31 H 0.193 0.807 32 H 0.043 0.957 33 H 0.054 0.946 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.222 0.778 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.102 0.898 42 H 0.089 0.911 43 H 0.105 0.895 44 H 0.106 0.894 45 H 0.114 0.886 46 H 0.108 0.892 47 H 0.107 0.893 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 18.962 -2.163 -14.697 24.088 hybrid contribution -0.415 1.934 0.853 2.154 sum 18.548 -0.229 -13.844 23.146 Atomic orbital electron populations 1.69710 1.05109 1.25776 1.57389 1.24659 0.95168 0.97124 1.02081 0.86559 0.79355 0.85285 0.77600 1.21268 1.21678 1.20292 1.19050 0.80916 0.94860 1.42493 0.89255 1.42647 1.04394 1.02220 1.90412 1.20163 0.85659 0.89316 0.98373 1.21627 0.94555 1.01246 0.95333 1.21232 1.00312 0.99167 0.92045 1.21484 1.02283 0.94289 0.82232 1.46190 1.57182 1.28786 1.06583 1.20343 0.80987 0.84848 0.83963 1.90768 1.35032 1.26901 1.85941 1.20089 0.86702 1.02786 0.96065 0.86195 1.21492 1.00741 1.01285 0.90197 1.21686 0.94104 1.01398 0.98583 1.20051 0.95153 1.02601 0.89757 1.21745 0.89228 1.05826 0.97491 1.74861 1.19310 1.15501 1.02594 1.78606 1.02246 1.19190 1.05915 1.44823 1.05469 1.47338 1.12388 0.70922 1.21466 0.94291 1.09596 0.89266 1.22982 1.00666 0.93564 1.03758 1.23016 1.01810 0.99823 0.95894 0.93056 0.80651 0.95704 0.94552 0.90263 0.92079 0.91419 0.89333 0.77782 0.89822 0.89398 0.89768 0.91120 0.89498 0.89411 0.88615 0.89192 0.89305 0.88424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.02 13.97 55.49 0.78 -28.24 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 3 Si 0.88 21.47 27.79 -169.99 -4.72 16.74 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.28 6.45 56.52 0.36 -5.91 16 7 C -0.24 -6.76 10.47 -15.06 -0.16 -6.91 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 9 N -0.75 -17.04 5.18 -59.90 -0.31 -17.35 16 10 C 0.19 3.54 5.85 -4.04 -0.02 3.51 16 11 C -0.13 -1.75 1.64 -154.51 -0.25 -2.00 16 12 C -0.09 -1.07 5.06 -26.73 -0.14 -1.21 16 13 C 0.12 1.49 5.44 -4.05 -0.02 1.46 16 14 N -0.73 -7.35 4.96 -60.30 -0.30 -7.64 16 15 C 0.51 5.89 7.13 -10.98 -0.08 5.82 16 16 O -0.51 -8.01 15.81 5.56 0.09 -7.92 16 17 C -0.03 -0.27 2.90 -92.78 -0.27 -0.54 16 18 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 19 C -0.10 -0.75 4.67 -26.46 -0.12 -0.88 16 20 C -0.12 -0.66 5.90 -26.46 -0.16 -0.81 16 21 C -0.04 -0.25 6.30 -27.71 -0.17 -0.42 16 22 C 0.00 -0.03 7.11 -83.12 -0.59 -0.62 16 23 N -0.26 -3.15 12.40 33.16 0.41 -2.74 16 24 N -0.08 -0.94 13.40 60.35 0.81 -0.13 16 25 N -0.38 -3.34 6.78 33.39 0.23 -3.12 16 26 H 0.44 2.70 7.02 -190.07 -1.33 1.37 16 27 C -0.01 -0.09 6.40 -82.50 -0.53 -0.62 16 28 C -0.17 -1.96 9.97 -26.70 -0.27 -2.23 16 29 C -0.17 -2.09 9.92 -26.70 -0.26 -2.35 16 30 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 31 H 0.36 7.94 4.63 -40.82 -0.19 7.75 16 32 H 0.03 0.48 8.10 -51.93 -0.42 0.06 16 33 H 0.04 0.70 7.46 -51.93 -0.39 0.31 16 34 H 0.08 1.08 7.17 -51.93 -0.37 0.71 16 35 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.09 1.42 7.41 -51.93 -0.38 1.04 16 38 H 0.39 2.67 6.97 -40.82 -0.28 2.38 16 39 H 0.08 0.76 7.74 -51.93 -0.40 0.36 16 40 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 43 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 47 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 385.69 15.07 5.81 5.81 Total: -1.00 -35.48 385.69 -8.79 -44.27 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -8.44 Total: 8.07 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -3.14 Total: -7.74 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: 1.61 Total: -59.23 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: 0.09 Total: -7.92 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.72 Total: 16.74 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.48 -8.79 -44.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166875344.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.742 kcal (2) G-P(sol) polarization free energy of solvation -35.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds