Wall clock time and date at job start Tue Mar 31 2020 17:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86805 * 120.00021 * 2 1 4 4 H 1.48499 * 109.47045 * 274.54318 * 3 2 1 5 5 H 1.48499 * 109.46981 * 34.53957 * 3 2 1 6 6 H 1.48493 * 109.47160 * 154.54174 * 3 2 1 7 7 C 1.38812 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00305 * 354.55980 * 7 2 1 9 9 N 1.36935 * 119.99490 * 174.83163 * 7 2 1 10 10 C 1.46503 * 119.99519 * 184.61593 * 9 7 2 11 11 C 1.53004 * 109.46864 * 174.92390 * 10 9 7 12 12 C 1.53001 * 115.54912 * 303.23265 * 11 10 9 13 13 C 1.52996 * 109.47587 * 294.71458 * 12 11 10 14 14 N 1.46491 * 109.47559 * 185.39380 * 13 12 11 15 15 C 1.34774 * 120.00541 * 184.95030 * 14 13 12 16 16 O 1.21282 * 119.99682 * 5.03213 * 15 14 13 17 17 C 1.50704 * 120.00534 * 185.03846 * 15 14 13 18 18 H 1.08998 * 109.68660 * 300.54140 * 17 15 14 19 19 C 1.53429 * 109.69529 * 179.97438 * 17 15 14 20 20 C 1.53103 * 109.55501 * 190.55817 * 19 17 15 21 21 C 1.53423 * 109.58403 * 70.05233 * 20 19 17 22 22 C 1.50597 * 108.33016 * 310.17620 * 21 20 19 23 23 N 1.32913 * 129.16439 * 196.52836 * 22 21 20 24 24 N 1.29007 * 108.63879 * 179.83498 * 23 22 21 25 25 N 1.29113 * 110.26254 * 0.09884 * 24 23 22 26 26 H 0.97000 * 126.00923 * 180.02562 * 25 24 23 27 27 C 1.34395 * 107.97862 * 0.02562 * 25 24 23 28 28 C 1.53001 * 117.49976 * 157.56838 * 11 10 9 29 29 C 1.52997 * 117.50043 * 88.91118 * 11 10 9 30 30 H 0.97008 * 120.00542 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00909 * 4.61612 * 9 7 2 32 32 H 1.09004 * 109.47182 * 294.91559 * 10 9 7 33 33 H 1.08996 * 109.47537 * 54.92617 * 10 9 7 34 34 H 1.09000 * 109.46817 * 54.71488 * 12 11 10 35 35 H 1.09005 * 109.47167 * 174.71005 * 12 11 10 36 36 H 1.09004 * 109.47207 * 305.39454 * 13 12 11 37 37 H 1.09001 * 109.47000 * 65.38778 * 13 12 11 38 38 H 0.97002 * 120.00190 * 4.94244 * 14 13 12 39 39 H 1.08997 * 109.45623 * 310.58188 * 19 17 15 40 40 H 1.09001 * 109.46048 * 70.54603 * 19 17 15 41 41 H 1.09001 * 109.45375 * 190.08386 * 20 19 17 42 42 H 1.09004 * 109.45588 * 310.01440 * 20 19 17 43 43 H 1.08996 * 109.69395 * 69.89074 * 21 20 19 44 44 H 1.09003 * 109.69105 * 190.42978 * 21 20 19 45 45 H 1.09001 * 117.50046 * 359.97438 * 28 11 10 46 46 H 1.09000 * 117.50255 * 145.01311 * 28 11 10 47 47 H 1.09003 * 117.49320 * 214.98001 * 29 11 10 48 48 H 1.08998 * 117.49866 * 359.97062 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4016 2.1019 -1.3957 5 1 1.4989 2.6231 0.7938 6 1 3.5924 1.4144 0.6018 7 6 2.0102 -1.2022 0.0005 8 1 1.4738 -2.1353 0.0896 9 7 3.3753 -1.2045 -0.1063 10 6 4.0999 -2.4738 -0.2076 11 6 5.5860 -2.1954 -0.4421 12 6 5.9118 -1.3421 -1.6695 13 6 5.5204 -2.1026 -2.9381 14 7 5.9490 -1.3428 -4.1149 15 6 5.6218 -1.7718 -5.3500 16 8 4.8966 -2.7344 -5.4852 17 6 6.1571 -1.0554 -6.5630 18 1 5.8346 -0.0143 -6.5467 19 6 5.6400 -1.7374 -7.8364 20 6 6.3847 -1.1824 -9.0535 21 6 7.8398 -1.6682 -9.0317 22 6 8.4099 -1.3948 -7.6648 23 7 9.6804 -1.3673 -7.2754 24 7 9.7198 -1.0897 -6.0162 25 7 8.5239 -0.9342 -5.5550 26 1 8.2895 -0.7201 -4.6384 27 6 7.6610 -1.1211 -6.5682 28 6 6.5793 -3.2956 -0.0628 29 6 6.4767 -2.0291 0.7907 30 1 -0.4851 0.8401 0.0004 31 1 3.8627 -0.3659 -0.1149 32 1 3.9774 -3.0370 0.7176 33 1 3.7029 -3.0533 -1.0410 34 1 5.3542 -0.4067 -1.6201 35 1 6.9803 -1.1274 -1.6896 36 1 6.0045 -3.0793 -2.9401 37 1 4.4386 -2.2333 -2.9641 38 1 6.4683 -0.5309 -4.0053 39 1 5.8085 -2.8120 -7.7667 40 1 4.5728 -1.5435 -7.9444 41 1 5.8996 -1.5302 -9.9656 42 1 6.3653 -0.0929 -9.0253 43 1 7.8729 -2.7383 -9.2361 44 1 8.4173 -1.1324 -9.7850 45 1 6.1741 -4.2175 0.3542 46 1 7.4650 -3.4112 -0.6874 47 1 7.2950 -1.3118 0.7271 48 1 6.0039 -2.1175 1.7688 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166875344.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:00 Heat of formation + Delta-G solvation = 57.488641 kcal Electronic energy + Delta-G solvation = -28949.033009 eV Core-core repulsion = 25040.509494 eV Total energy + Delta-G solvation = -3908.523515 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.65156 -41.14041 -39.68926 -37.82598 -36.29106 -35.94665 -35.01070 -33.25678 -32.08553 -31.18885 -30.77811 -28.14726 -26.09639 -24.77544 -24.27976 -24.03726 -23.52361 -22.99878 -22.13897 -20.62690 -20.42179 -19.55812 -19.09378 -18.20404 -17.45636 -17.11044 -16.90026 -16.64573 -16.49439 -15.85606 -15.58927 -15.28327 -15.03824 -14.99176 -14.88327 -14.69052 -14.46154 -14.22534 -14.09273 -13.48094 -13.21901 -13.20011 -12.88869 -12.71788 -12.53851 -12.47679 -12.32606 -12.28104 -12.22419 -12.04042 -11.98048 -11.83374 -11.68360 -11.40140 -11.19333 -11.07990 -10.97346 -10.62285 -10.30125 -9.99791 -9.30128 -8.04679 -5.37957 0.34422 1.26571 1.33338 1.39124 1.40558 1.47171 1.62364 1.95153 2.46521 2.80409 3.14639 3.24720 3.25740 3.50545 3.64319 3.69660 3.74647 3.87940 3.89405 3.97500 4.05682 4.15118 4.25210 4.29913 4.32817 4.40611 4.43220 4.54628 4.55678 4.81328 4.89195 4.91920 4.95270 4.96908 5.05627 5.08512 5.09541 5.16599 5.17913 5.22186 5.29476 5.31087 5.31752 5.43315 5.73119 5.73757 6.19253 6.26357 6.99004 7.06610 7.27826 7.82041 8.04535 9.17255 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012954 B = 0.003036 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.017331 B = 9219.556679 C =10256.025139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.065 4.065 3 Si 0.958 3.042 4 H -0.275 1.275 5 H -0.297 1.297 6 H -0.246 1.246 7 C -0.237 4.237 8 H 0.048 0.952 9 N -0.748 5.748 10 C 0.190 3.810 11 C -0.146 4.146 12 C -0.081 4.081 13 C 0.128 3.872 14 N -0.722 5.722 15 C 0.511 3.489 16 O -0.561 6.561 17 C -0.022 4.022 18 H 0.150 0.850 19 C -0.100 4.100 20 C -0.109 4.109 21 C -0.038 4.038 22 C -0.011 4.011 23 N -0.288 5.288 24 N -0.103 5.103 25 N -0.366 5.366 26 H 0.455 0.545 27 C -0.007 4.007 28 C -0.152 4.152 29 C -0.162 4.162 30 H 0.258 0.742 31 H 0.368 0.632 32 H 0.016 0.984 33 H 0.019 0.981 34 H 0.064 0.936 35 H 0.104 0.896 36 H 0.069 0.931 37 H 0.043 0.957 38 H 0.408 0.592 39 H 0.063 0.937 40 H 0.089 0.911 41 H 0.103 0.897 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.099 0.901 45 H 0.092 0.908 46 H 0.117 0.883 47 H 0.115 0.885 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.269 0.526 -15.602 26.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.256 4.256 3 Si 0.784 3.216 4 H -0.201 1.201 5 H -0.224 1.224 6 H -0.170 1.170 7 C -0.368 4.368 8 H 0.067 0.933 9 N -0.394 5.394 10 C 0.064 3.936 11 C -0.147 4.147 12 C -0.119 4.119 13 C 0.004 3.996 14 N -0.376 5.376 15 C 0.296 3.704 16 O -0.438 6.438 17 C -0.046 4.046 18 H 0.168 0.832 19 C -0.139 4.139 20 C -0.147 4.147 21 C -0.077 4.077 22 C -0.151 4.151 23 N -0.153 5.153 24 N -0.082 5.082 25 N -0.089 5.089 26 H 0.304 0.696 27 C -0.143 4.143 28 C -0.189 4.189 29 C -0.199 4.199 30 H 0.067 0.933 31 H 0.202 0.798 32 H 0.034 0.966 33 H 0.037 0.963 34 H 0.083 0.917 35 H 0.122 0.878 36 H 0.088 0.912 37 H 0.062 0.938 38 H 0.244 0.756 39 H 0.082 0.918 40 H 0.107 0.893 41 H 0.121 0.879 42 H 0.101 0.899 43 H 0.107 0.893 44 H 0.118 0.882 45 H 0.111 0.889 46 H 0.135 0.865 47 H 0.133 0.867 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 22.164 -0.319 -15.436 27.011 hybrid contribution -1.466 1.192 1.128 2.200 sum 20.698 0.873 -14.309 25.177 Atomic orbital electron populations 1.69915 1.07382 1.26771 1.59479 1.25567 0.96110 1.01527 1.02433 0.85351 0.78965 0.79209 0.78074 1.20122 1.22367 1.17044 1.19004 0.83237 0.93421 1.41141 0.93346 1.42557 1.02599 1.04144 1.90074 1.20206 0.89018 0.87291 0.97083 1.21437 0.91550 1.04249 0.97445 1.21188 1.02667 0.97651 0.90362 1.21226 0.99570 0.95134 0.83641 1.46047 1.56713 1.29157 1.05649 1.20958 0.80142 0.84246 0.85006 1.90754 1.37307 1.29112 1.86660 1.20132 0.85958 1.03916 0.94554 0.83248 1.21518 1.01191 1.00226 0.90943 1.21660 0.92868 1.02008 0.98186 1.20208 0.95943 1.03016 0.88566 1.22275 0.88659 1.05183 0.98993 1.74836 1.20718 1.16698 1.03073 1.78545 1.03270 1.20310 1.06041 1.44804 1.04823 1.46306 1.12917 0.69577 1.21550 0.94397 1.09230 0.89165 1.23073 1.00090 0.92856 1.02899 1.23099 1.01490 1.00874 0.94412 0.93320 0.79792 0.96628 0.96261 0.91713 0.87762 0.91238 0.93839 0.75574 0.91786 0.89282 0.87880 0.89862 0.89308 0.88236 0.88940 0.86513 0.86671 0.89783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.44 13.97 21.65 0.30 -63.14 16 2 C -0.07 -3.82 5.50 84.86 0.47 -3.36 16 3 Si 0.96 44.11 27.79 68.60 1.91 46.02 16 4 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 5 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.25 -9.98 6.45 99.48 0.64 -9.34 16 7 C -0.24 -13.60 10.47 84.03 0.88 -12.72 16 8 H 0.05 3.10 8.06 -2.91 -0.02 3.08 16 9 N -0.75 -34.02 5.18 -343.44 -1.78 -35.80 16 10 C 0.19 7.10 5.85 86.38 0.50 7.61 16 11 C -0.15 -3.72 1.64 -52.18 -0.09 -3.81 16 12 C -0.08 -1.70 5.06 30.59 0.15 -1.54 16 13 C 0.13 3.04 5.44 86.38 0.47 3.51 16 14 N -0.72 -13.04 4.96 -463.08 -2.30 -15.34 16 15 C 0.51 11.13 7.13 87.66 0.62 11.76 16 16 O -0.56 -17.78 15.81 -3.03 -0.05 -17.83 16 17 C -0.02 -0.32 2.90 -12.19 -0.04 -0.35 16 18 H 0.15 1.29 8.14 -2.39 -0.02 1.27 16 19 C -0.10 -1.37 4.67 30.77 0.14 -1.23 16 20 C -0.11 -0.91 5.90 30.77 0.18 -0.73 16 21 C -0.04 -0.45 6.30 29.96 0.19 -0.26 16 22 C -0.01 -0.19 7.11 41.75 0.30 0.11 16 23 N -0.29 -6.72 12.40 -48.99 -0.61 -7.33 16 24 N -0.10 -2.23 13.40 37.02 0.50 -1.74 16 25 N -0.37 -5.59 6.78 -48.27 -0.33 -5.92 16 26 H 0.46 4.14 7.02 -219.68 -1.54 2.59 16 27 C -0.01 -0.11 6.40 41.50 0.27 0.16 16 28 C -0.15 -2.99 9.97 30.62 0.31 -2.68 16 29 C -0.16 -3.46 9.92 30.62 0.30 -3.16 16 30 H 0.26 15.75 8.31 -92.70 -0.77 14.98 16 31 H 0.37 15.58 4.63 -92.71 -0.43 15.15 16 32 H 0.02 0.61 8.10 -2.39 -0.02 0.60 16 33 H 0.02 0.78 7.46 -2.39 -0.02 0.77 16 34 H 0.06 1.57 7.17 -2.39 -0.02 1.56 16 35 H 0.10 1.33 8.09 -2.38 -0.02 1.31 16 36 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 37 H 0.04 1.44 7.41 -2.39 -0.02 1.42 16 38 H 0.41 4.25 6.97 -92.71 -0.65 3.60 16 39 H 0.06 1.14 7.74 -2.39 -0.02 1.12 16 40 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.08 0.53 8.12 -2.39 -0.02 0.51 16 43 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 47 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 48 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -81.79 385.69 0.63 -81.16 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: -1.68 Total: 26.61 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: 4.67 Total: -6.70 kcal Atomic # 7 Polarization: -125.05 SS G_CDS: -4.21 Total: -129.27 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.05 Total: -17.83 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.91 Total: 46.02 kcal Total: -81.79 0.63 -81.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166875344.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.652 kcal (2) G-P(sol) polarization free energy of solvation -81.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds