Wall clock time and date at job start Tue Mar 31 2020 18:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00125 * 2 1 4 4 H 1.48503 * 109.47068 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47263 * 300.00016 * 3 2 1 6 6 H 1.48500 * 109.47131 * 60.00248 * 3 2 1 7 7 C 1.38819 * 119.99814 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99807 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00149 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00183 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46979 * 175.59067 * 10 9 7 12 12 C 1.52991 * 115.55136 * 303.89909 * 11 10 9 13 13 C 1.52999 * 109.47630 * 278.03273 * 12 11 10 14 14 N 1.46499 * 109.47309 * 175.02306 * 13 12 11 15 15 C 1.34774 * 119.99547 * 179.97438 * 14 13 12 16 16 O 1.21593 * 120.00602 * 0.02562 * 15 14 13 17 17 C 1.47525 * 119.99870 * 179.97438 * 15 14 13 18 18 C 1.36589 * 125.77342 * 180.02562 * 17 15 14 19 19 N 1.34812 * 106.84168 * 180.02562 * 18 17 15 20 20 C 1.46503 * 126.59673 * 179.97438 * 19 18 17 21 21 C 1.52995 * 109.47450 * 124.99522 * 20 19 18 22 22 C 1.53000 * 117.50223 * 243.62736 * 21 20 19 23 23 C 1.52996 * 117.50215 * 174.99960 * 21 20 19 24 24 N 1.40211 * 106.81304 * 0.22676 * 19 18 17 25 25 N 1.28767 * 108.35981 * 359.61379 * 24 19 18 26 26 C 1.53001 * 117.51570 * 89.60735 * 11 10 9 27 27 C 1.52991 * 60.00271 * 107.47472 * 26 11 10 28 28 H 0.97000 * 119.99844 * 0.02562 * 1 2 3 29 29 H 0.97006 * 119.99419 * 0.02562 * 9 7 2 30 30 H 1.08999 * 109.46824 * 55.58911 * 10 9 7 31 31 H 1.08996 * 109.47076 * 295.59278 * 10 9 7 32 32 H 1.09006 * 109.46989 * 158.03145 * 12 11 10 33 33 H 1.08996 * 109.47317 * 38.03488 * 12 11 10 34 34 H 1.09002 * 109.46461 * 55.02245 * 13 12 11 35 35 H 1.08999 * 109.46854 * 295.03145 * 13 12 11 36 36 H 0.96993 * 120.00122 * 0.02562 * 14 13 12 37 37 H 1.08000 * 126.58313 * 0.04645 * 18 17 15 38 38 H 1.09000 * 109.47101 * 4.99568 * 20 19 18 39 39 H 1.09001 * 109.47090 * 244.99930 * 20 19 18 40 40 H 1.09004 * 115.54723 * 29.32940 * 21 20 19 41 41 H 1.08994 * 117.49577 * 359.97438 * 22 21 20 42 42 H 1.08999 * 117.50261 * 145.02525 * 22 21 20 43 43 H 1.09001 * 117.50013 * 214.97892 * 23 21 20 44 44 H 1.08995 * 117.50135 * 0.02562 * 23 21 20 45 45 H 1.09003 * 117.49608 * 214.96880 * 26 11 10 46 46 H 1.09000 * 117.50112 * 359.97438 * 26 11 10 47 47 H 1.09003 * 117.50271 * 252.50911 * 27 26 11 48 48 H 1.09000 * 117.49779 * 107.48355 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6569 0.0005 11 6 1.0674 -4.8176 0.1114 12 6 0.1320 -4.7735 1.3213 13 6 0.8589 -5.3269 2.5485 14 7 0.0067 -5.1754 3.7305 15 6 0.4428 -5.5967 4.9341 16 8 1.5437 -6.1021 5.0392 17 6 -0.4151 -5.4437 6.1244 18 6 -0.0931 -5.8267 7.3954 19 7 -1.1453 -5.5111 8.1769 20 6 -1.2596 -5.7351 9.6202 21 6 -1.5856 -4.4128 10.3173 22 6 -0.5528 -3.8592 11.3010 23 6 -1.8617 -4.4565 11.8215 24 7 -2.1116 -4.9324 7.3418 25 7 -1.6460 -4.9042 6.1416 26 6 0.5123 -5.4000 -1.1900 27 6 1.5334 -6.1925 -0.3716 28 1 -0.4850 0.8401 -0.0004 29 1 0.3555 -2.3880 -0.0002 30 1 2.7426 -3.6811 0.8484 31 1 2.6241 -3.7496 -0.9263 32 1 -0.7521 -5.3783 1.1192 33 1 -0.1684 -3.7431 1.5110 34 1 1.7887 -4.7780 2.6982 35 1 1.0812 -6.3827 2.3937 36 1 -0.8717 -4.7726 3.6466 37 1 0.8278 -6.2928 7.7133 38 1 -0.3164 -6.1248 10.0032 39 1 -2.0554 -6.4541 9.8143 40 1 -2.1501 -3.6945 9.7226 41 1 0.3588 -4.4373 11.4518 42 1 -0.4376 -2.7766 11.3537 43 1 -2.6076 -3.7667 12.2166 44 1 -1.8107 -5.4272 12.3146 45 1 -0.5194 -5.7516 -1.1842 46 1 0.8525 -4.9559 -2.1255 47 1 2.5456 -6.2701 -0.7686 48 1 1.1735 -7.0657 0.1727 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167562938.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:55 Heat of formation + Delta-G solvation = 117.810157 kcal Electronic energy + Delta-G solvation = -27401.507282 eV Core-core repulsion = 23495.599504 eV Total energy + Delta-G solvation = -3905.907778 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.40366 -39.38897 -38.27886 -38.10367 -34.82477 -34.34843 -33.87767 -31.32753 -30.73715 -29.84087 -28.21861 -25.93950 -24.34086 -23.14692 -22.92985 -22.70763 -22.47024 -21.71938 -21.37349 -20.27672 -18.78580 -18.03151 -17.03863 -16.72552 -16.41177 -16.02728 -15.59740 -15.38570 -14.94626 -14.78994 -14.73636 -14.38114 -14.17290 -13.99813 -13.67941 -13.23850 -13.01357 -12.65481 -12.60047 -12.27260 -12.22045 -12.11533 -11.80847 -11.47743 -11.37448 -11.14314 -11.07348 -10.88709 -10.85115 -10.81206 -10.55894 -10.49385 -10.12826 -10.02032 -9.86302 -9.59176 -9.49540 -9.27355 -8.88870 -8.78823 -6.84484 -5.70987 -2.98570 0.91794 1.60696 1.70434 3.10309 3.20423 3.31267 3.47183 3.52834 3.55006 3.72926 4.03957 4.11624 4.14000 4.31095 4.35665 4.55745 4.61219 4.65841 4.76358 4.78730 5.05447 5.09469 5.13907 5.16747 5.22434 5.30928 5.40236 5.50851 5.53287 5.56583 5.62339 5.69527 5.75865 5.84333 5.96242 6.08185 6.22718 6.25485 6.26747 6.48494 6.51330 6.53752 6.69244 6.82391 6.89528 7.50990 7.76232 7.81443 8.23553 8.48231 9.59757 10.18446 10.53901 11.51995 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010157 B = 0.002384 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.173309 B =11744.379555 C =13757.596158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.728 5.728 10 C 0.188 3.812 11 C -0.118 4.118 12 C -0.093 4.093 13 C 0.127 3.873 14 N -0.709 5.709 15 C 0.603 3.397 16 O -0.544 6.544 17 C -0.098 4.098 18 C 0.093 3.907 19 N -0.360 5.360 20 C 0.155 3.845 21 C -0.178 4.178 22 C -0.176 4.176 23 C -0.165 4.165 24 N -0.062 5.062 25 N -0.202 5.202 26 C -0.167 4.167 27 C -0.178 4.178 28 H 0.254 0.746 29 H 0.385 0.615 30 H 0.026 0.974 31 H 0.017 0.983 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.409 0.591 37 H 0.204 0.796 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.121 0.879 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.099 0.901 45 H 0.089 0.911 46 H 0.094 0.906 47 H 0.092 0.908 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.523 -16.725 20.963 27.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.372 5.372 10 C 0.060 3.940 11 C -0.119 4.119 12 C -0.131 4.131 13 C 0.004 3.996 14 N -0.359 5.359 15 C 0.387 3.613 16 O -0.420 6.420 17 C -0.237 4.237 18 C -0.064 4.064 19 N -0.145 5.145 20 C 0.034 3.966 21 C -0.196 4.196 22 C -0.213 4.213 23 C -0.202 4.202 24 N -0.042 5.042 25 N -0.076 5.076 26 C -0.204 4.204 27 C -0.215 4.215 28 H 0.064 0.936 29 H 0.219 0.781 30 H 0.044 0.956 31 H 0.035 0.965 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.245 0.755 37 H 0.221 0.779 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.139 0.861 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.107 0.893 46 H 0.113 0.887 47 H 0.110 0.890 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.976 -16.348 20.983 26.895 hybrid contribution 0.660 0.775 0.160 1.031 sum -3.316 -15.573 21.144 26.468 Atomic orbital electron populations 1.69668 1.05032 1.25417 1.58028 1.24719 0.95516 0.97583 1.03238 0.86141 0.78802 0.84293 0.77125 1.20612 1.21944 1.21943 1.19275 0.91039 0.84173 1.42240 0.91226 1.42319 1.05921 0.99668 1.89288 1.20177 0.91890 0.84210 0.97710 1.21564 1.00868 0.94841 0.94603 1.21275 0.96746 1.03196 0.91908 1.21404 0.94204 1.00999 0.83015 1.45828 1.21276 1.61500 1.07261 1.16716 0.84756 0.78246 0.81631 1.90800 1.20287 1.45414 1.85547 1.21522 0.95201 1.11713 0.95296 1.23360 0.94034 0.98473 0.90541 1.50460 1.12413 1.41892 1.09688 1.21589 1.04553 0.97442 0.73018 1.22548 1.05531 0.98563 0.92994 1.23154 0.93563 1.01847 1.02694 1.22994 0.99869 1.03239 0.94129 1.81991 1.11100 1.17277 0.93858 1.74676 1.08149 1.11584 1.13145 1.22994 0.98258 1.03493 0.95616 1.22964 0.99625 0.94511 1.04440 0.93641 0.78099 0.95619 0.96490 0.91866 0.89056 0.90677 0.91589 0.75549 0.77911 0.87598 0.87882 0.86064 0.88283 0.88193 0.87996 0.88225 0.89295 0.88722 0.88962 0.89195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.48 13.06 55.49 0.72 -27.75 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.90 22.86 29.55 -169.99 -5.02 17.84 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 7 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -18.52 5.23 -59.91 -0.31 -18.83 16 10 C 0.19 3.86 6.15 -4.04 -0.02 3.84 16 11 C -0.12 -1.93 1.65 -154.51 -0.25 -2.19 16 12 C -0.09 -1.45 5.20 -26.74 -0.14 -1.59 16 13 C 0.13 1.90 5.49 -4.04 -0.02 1.88 16 14 N -0.71 -10.34 5.55 -61.35 -0.34 -10.68 16 15 C 0.60 9.09 7.82 -12.48 -0.10 8.99 16 16 O -0.54 -9.33 16.86 5.28 0.09 -9.24 16 17 C -0.10 -1.29 6.99 -83.55 -0.58 -1.87 16 18 C 0.09 0.90 11.27 -16.84 -0.19 0.71 16 19 N -0.36 -3.25 3.69 -61.06 -0.23 -3.48 16 20 C 0.15 0.76 6.82 -4.04 -0.03 0.73 16 21 C -0.18 -1.00 5.94 -90.62 -0.54 -1.54 16 22 C -0.18 -0.83 10.18 -26.73 -0.27 -1.10 16 23 C -0.16 -0.64 10.25 -26.73 -0.27 -0.91 16 24 N -0.06 -0.78 13.49 60.35 0.81 0.04 16 25 N -0.20 -2.83 12.04 32.85 0.40 -2.44 16 26 C -0.17 -2.47 9.87 -26.74 -0.26 -2.73 16 27 C -0.18 -2.40 9.57 -26.73 -0.26 -2.66 16 28 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.38 10.24 6.80 -40.82 -0.28 9.97 16 30 H 0.03 0.55 7.96 -51.93 -0.41 0.13 16 31 H 0.02 0.36 8.10 -51.93 -0.42 -0.06 16 32 H 0.06 0.86 7.93 -51.93 -0.41 0.45 16 33 H 0.09 1.68 6.94 -51.93 -0.36 1.32 16 34 H 0.07 1.29 7.96 -51.93 -0.41 0.87 16 35 H 0.07 0.93 7.72 -51.93 -0.40 0.53 16 36 H 0.41 5.63 8.16 -40.82 -0.33 5.29 16 37 H 0.20 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.11 0.23 7.82 -51.93 -0.41 -0.17 16 39 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.12 0.96 7.95 -51.93 -0.41 0.54 16 41 H 0.10 0.36 8.03 -51.93 -0.42 -0.06 16 42 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.09 1.20 8.07 -51.93 -0.42 0.78 16 46 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 47 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 48 H 0.09 1.08 7.90 -51.93 -0.41 0.67 16 LS Contribution 407.87 15.07 6.15 6.15 Total: -1.00 -34.70 407.87 -8.52 -43.22 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -7.60 Total: 10.99 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -3.19 Total: -5.82 kcal Atomic # 7 Polarization: -64.20 SS G_CDS: 1.06 Total: -63.14 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.70 -8.52 -43.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167562938.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.029 kcal (2) G-P(sol) polarization free energy of solvation -34.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds