Wall clock time and date at job start Tue Mar 31 2020 18:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00125 * 2 1 4 4 H 1.48503 * 109.47068 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47263 * 300.00016 * 3 2 1 6 6 H 1.48500 * 109.47131 * 60.00248 * 3 2 1 7 7 C 1.38819 * 119.99814 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99807 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00149 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00183 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46979 * 175.59067 * 10 9 7 12 12 C 1.52991 * 115.55136 * 303.89909 * 11 10 9 13 13 C 1.52999 * 109.47630 * 278.03273 * 12 11 10 14 14 N 1.46499 * 109.47309 * 175.02306 * 13 12 11 15 15 C 1.34774 * 119.99547 * 179.97438 * 14 13 12 16 16 O 1.21593 * 120.00602 * 0.02562 * 15 14 13 17 17 C 1.47525 * 119.99870 * 179.97438 * 15 14 13 18 18 C 1.36589 * 125.77342 * 180.02562 * 17 15 14 19 19 N 1.34812 * 106.84168 * 180.02562 * 18 17 15 20 20 C 1.46503 * 126.59673 * 179.97438 * 19 18 17 21 21 C 1.52995 * 109.47450 * 124.99522 * 20 19 18 22 22 C 1.53000 * 117.50223 * 243.62736 * 21 20 19 23 23 C 1.52996 * 117.50215 * 174.99960 * 21 20 19 24 24 N 1.40211 * 106.81304 * 0.22676 * 19 18 17 25 25 N 1.28767 * 108.35981 * 359.61379 * 24 19 18 26 26 C 1.53001 * 117.51570 * 89.60735 * 11 10 9 27 27 C 1.52991 * 60.00271 * 107.47472 * 26 11 10 28 28 H 0.97000 * 119.99844 * 0.02562 * 1 2 3 29 29 H 0.97006 * 119.99419 * 0.02562 * 9 7 2 30 30 H 1.08999 * 109.46824 * 55.58911 * 10 9 7 31 31 H 1.08996 * 109.47076 * 295.59278 * 10 9 7 32 32 H 1.09006 * 109.46989 * 158.03145 * 12 11 10 33 33 H 1.08996 * 109.47317 * 38.03488 * 12 11 10 34 34 H 1.09002 * 109.46461 * 55.02245 * 13 12 11 35 35 H 1.08999 * 109.46854 * 295.03145 * 13 12 11 36 36 H 0.96993 * 120.00122 * 0.02562 * 14 13 12 37 37 H 1.08000 * 126.58313 * 0.04645 * 18 17 15 38 38 H 1.09000 * 109.47101 * 4.99568 * 20 19 18 39 39 H 1.09001 * 109.47090 * 244.99930 * 20 19 18 40 40 H 1.09004 * 115.54723 * 29.32940 * 21 20 19 41 41 H 1.08994 * 117.49577 * 359.97438 * 22 21 20 42 42 H 1.08999 * 117.50261 * 145.02525 * 22 21 20 43 43 H 1.09001 * 117.50013 * 214.97892 * 23 21 20 44 44 H 1.08995 * 117.50135 * 0.02562 * 23 21 20 45 45 H 1.09003 * 117.49608 * 214.96880 * 26 11 10 46 46 H 1.09000 * 117.50112 * 359.97438 * 26 11 10 47 47 H 1.09003 * 117.50271 * 252.50911 * 27 26 11 48 48 H 1.09000 * 117.49779 * 107.48355 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6569 0.0005 11 6 1.0674 -4.8176 0.1114 12 6 0.1320 -4.7735 1.3213 13 6 0.8589 -5.3269 2.5485 14 7 0.0067 -5.1754 3.7305 15 6 0.4428 -5.5967 4.9341 16 8 1.5437 -6.1021 5.0392 17 6 -0.4151 -5.4437 6.1244 18 6 -0.0931 -5.8267 7.3954 19 7 -1.1453 -5.5111 8.1769 20 6 -1.2596 -5.7351 9.6202 21 6 -1.5856 -4.4128 10.3173 22 6 -0.5528 -3.8592 11.3010 23 6 -1.8617 -4.4565 11.8215 24 7 -2.1116 -4.9324 7.3418 25 7 -1.6460 -4.9042 6.1416 26 6 0.5123 -5.4000 -1.1900 27 6 1.5334 -6.1925 -0.3716 28 1 -0.4850 0.8401 -0.0004 29 1 0.3555 -2.3880 -0.0002 30 1 2.7426 -3.6811 0.8484 31 1 2.6241 -3.7496 -0.9263 32 1 -0.7521 -5.3783 1.1192 33 1 -0.1684 -3.7431 1.5110 34 1 1.7887 -4.7780 2.6982 35 1 1.0812 -6.3827 2.3937 36 1 -0.8717 -4.7726 3.6466 37 1 0.8278 -6.2928 7.7133 38 1 -0.3164 -6.1248 10.0032 39 1 -2.0554 -6.4541 9.8143 40 1 -2.1501 -3.6945 9.7226 41 1 0.3588 -4.4373 11.4518 42 1 -0.4376 -2.7766 11.3537 43 1 -2.6076 -3.7667 12.2166 44 1 -1.8107 -5.4272 12.3146 45 1 -0.5194 -5.7516 -1.1842 46 1 0.8525 -4.9559 -2.1255 47 1 2.5456 -6.2701 -0.7686 48 1 1.1735 -7.0657 0.1727 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167562938.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:55 Heat of formation + Delta-G solvation = 94.258616 kcal Electronic energy + Delta-G solvation = -27402.528554 eV Core-core repulsion = 23495.599504 eV Total energy + Delta-G solvation = -3906.929050 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.26252 -40.56369 -39.46570 -38.64037 -36.11906 -35.75933 -35.09108 -32.78273 -32.28354 -30.95000 -28.86781 -27.79647 -25.47658 -24.60664 -24.03126 -23.46231 -23.27461 -22.83753 -22.11886 -21.18912 -20.01429 -19.22545 -18.87093 -17.48232 -17.24567 -17.21117 -16.77837 -16.50982 -16.21584 -15.92954 -15.65764 -15.48191 -15.28043 -15.03429 -14.86372 -14.69880 -14.38134 -14.11782 -13.89674 -13.34616 -13.15625 -13.00359 -12.84995 -12.82178 -12.54156 -12.43818 -12.28034 -12.23819 -12.07958 -11.92865 -11.83961 -11.65531 -11.36128 -11.25845 -11.08378 -10.98859 -10.90254 -10.52357 -10.44014 -10.04406 -8.95961 -7.94069 -5.21400 0.12724 0.58452 1.05892 1.45665 1.46544 1.56506 2.09577 2.22135 2.54761 2.76952 2.92091 3.15837 3.24026 3.39280 3.70011 3.82265 3.85741 3.87210 3.90631 3.95116 4.00727 4.03414 4.10641 4.13490 4.27155 4.42199 4.43236 4.50433 4.52900 4.65718 4.76593 4.77592 4.86964 4.96693 4.97978 5.00450 5.10349 5.11672 5.20511 5.21376 5.28836 5.36637 5.39771 5.40835 5.45186 5.50201 6.28474 6.38518 6.87147 7.09348 7.35331 8.12558 8.37372 9.29524 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010157 B = 0.002384 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.173309 B =11744.379555 C =13757.596158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.075 4.075 3 Si 0.970 3.030 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.294 1.294 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.737 5.737 10 C 0.188 3.812 11 C -0.141 4.141 12 C -0.081 4.081 13 C 0.136 3.864 14 N -0.709 5.709 15 C 0.603 3.397 16 O -0.568 6.568 17 C -0.127 4.127 18 C 0.113 3.887 19 N -0.345 5.345 20 C 0.147 3.853 21 C -0.193 4.193 22 C -0.180 4.180 23 C -0.150 4.150 24 N -0.087 5.087 25 N -0.229 5.229 26 C -0.166 4.166 27 C -0.147 4.147 28 H 0.250 0.750 29 H 0.376 0.624 30 H 0.018 0.982 31 H 0.016 0.984 32 H 0.086 0.914 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.082 0.918 36 H 0.412 0.588 37 H 0.240 0.760 38 H 0.143 0.857 39 H 0.121 0.879 40 H 0.091 0.909 41 H 0.116 0.884 42 H 0.087 0.913 43 H 0.099 0.901 44 H 0.122 0.878 45 H 0.106 0.894 46 H 0.083 0.917 47 H 0.099 0.901 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.699 -18.819 22.515 29.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.799 3.201 4 H -0.192 1.192 5 H -0.219 1.219 6 H -0.222 1.222 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.380 5.380 10 C 0.061 3.939 11 C -0.142 4.142 12 C -0.119 4.119 13 C 0.013 3.987 14 N -0.359 5.359 15 C 0.388 3.612 16 O -0.448 6.448 17 C -0.267 4.267 18 C -0.045 4.045 19 N -0.129 5.129 20 C 0.029 3.971 21 C -0.212 4.212 22 C -0.216 4.216 23 C -0.187 4.187 24 N -0.067 5.067 25 N -0.102 5.102 26 C -0.203 4.203 27 C -0.185 4.185 28 H 0.059 0.941 29 H 0.209 0.791 30 H 0.036 0.964 31 H 0.034 0.966 32 H 0.105 0.895 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.100 0.900 36 H 0.248 0.752 37 H 0.256 0.744 38 H 0.161 0.839 39 H 0.139 0.861 40 H 0.109 0.891 41 H 0.134 0.866 42 H 0.106 0.894 43 H 0.117 0.883 44 H 0.140 0.860 45 H 0.124 0.876 46 H 0.102 0.898 47 H 0.118 0.882 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.154 -18.459 22.551 29.313 hybrid contribution 0.430 1.385 -0.232 1.469 sum -2.724 -17.074 22.319 28.233 Atomic orbital electron populations 1.69818 1.06449 1.25858 1.59631 1.25519 0.96411 1.00891 1.03919 0.85118 0.78212 0.80055 0.76670 1.19227 1.21864 1.22172 1.19650 0.91381 0.85508 1.40902 0.91030 1.42486 1.05688 1.00716 1.89066 1.20247 0.92631 0.84010 0.96993 1.21384 1.01416 0.95263 0.96106 1.21116 0.97430 1.01469 0.91839 1.21262 0.93089 1.01318 0.83040 1.45848 1.21300 1.61431 1.07333 1.16960 0.84637 0.77540 0.82080 1.90769 1.21294 1.46703 1.85988 1.21469 0.95367 1.13906 0.95941 1.23866 0.94721 0.96598 0.89292 1.50747 1.11267 1.40003 1.10897 1.22087 1.07305 0.97395 0.70362 1.22442 1.06365 0.98599 0.93790 1.23241 0.94536 1.01549 1.02314 1.23089 0.99034 1.04126 0.92483 1.81906 1.12415 1.18439 0.93947 1.74645 1.08877 1.12506 1.14186 1.23057 0.99703 1.03301 0.94207 1.23062 0.99762 0.93168 1.02472 0.94076 0.79111 0.96387 0.96591 0.89505 0.92597 0.93303 0.90008 0.75250 0.74356 0.83887 0.86078 0.89119 0.86561 0.89407 0.88296 0.85960 0.87590 0.89810 0.88210 0.86713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.46 13.06 21.65 0.28 -60.18 16 2 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 3 Si 0.97 47.64 29.55 68.60 2.03 49.67 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 7 C -0.24 -14.00 9.99 84.04 0.84 -13.16 16 8 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 9 N -0.74 -38.48 5.23 -343.46 -1.79 -40.28 16 10 C 0.19 7.83 6.15 86.38 0.53 8.36 16 11 C -0.14 -4.52 1.65 -52.18 -0.09 -4.61 16 12 C -0.08 -2.50 5.20 30.59 0.16 -2.34 16 13 C 0.14 4.08 5.49 86.38 0.47 4.56 16 14 N -0.71 -21.02 5.55 -466.28 -2.59 -23.60 16 15 C 0.60 18.20 7.82 86.69 0.68 18.88 16 16 O -0.57 -19.28 16.86 -4.01 -0.07 -19.35 16 17 C -0.13 -3.31 6.99 40.82 0.29 -3.03 16 18 C 0.11 2.00 11.27 83.85 0.95 2.95 16 19 N -0.34 -5.69 3.69 -347.10 -1.28 -6.97 16 20 C 0.15 1.03 6.82 86.38 0.59 1.62 16 21 C -0.19 -1.92 5.94 -10.80 -0.06 -1.99 16 22 C -0.18 -1.39 10.18 30.60 0.31 -1.08 16 23 C -0.15 -0.85 10.25 30.59 0.31 -0.54 16 24 N -0.09 -2.18 13.49 37.02 0.50 -1.68 16 25 N -0.23 -6.55 12.04 -50.00 -0.60 -7.15 16 26 C -0.17 -4.64 9.87 30.59 0.30 -4.33 16 27 C -0.15 -3.60 9.57 30.59 0.29 -3.31 16 28 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 29 H 0.38 20.75 6.80 -92.70 -0.63 20.12 16 30 H 0.02 0.78 7.96 -2.39 -0.02 0.76 16 31 H 0.02 0.68 8.10 -2.39 -0.02 0.66 16 32 H 0.09 2.26 7.93 -2.38 -0.02 2.24 16 33 H 0.06 2.14 6.94 -2.39 -0.02 2.12 16 34 H 0.05 1.72 7.96 -2.39 -0.02 1.70 16 35 H 0.08 2.20 7.72 -2.39 -0.02 2.18 16 36 H 0.41 11.73 8.16 -92.71 -0.76 10.97 16 37 H 0.24 2.27 8.06 -2.91 -0.02 2.25 16 38 H 0.14 -0.01 7.82 -2.39 -0.02 -0.03 16 39 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.09 1.49 7.95 -2.38 -0.02 1.47 16 41 H 0.12 0.49 8.03 -2.39 -0.02 0.48 16 42 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 45 H 0.11 2.61 8.07 -2.39 -0.02 2.59 16 46 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 47 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 48 H 0.11 2.30 7.90 -2.39 -0.02 2.28 16 Total: -1.00 -77.58 407.87 2.11 -75.47 By element: Atomic # 1 Polarization: 36.49 SS G_CDS: -0.41 Total: 36.08 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 6.04 Total: -2.00 kcal Atomic # 7 Polarization: -134.39 SS G_CDS: -5.48 Total: -139.87 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.07 Total: -19.35 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.03 Total: 49.67 kcal Total: -77.58 2.11 -75.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167562938.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.731 kcal (2) G-P(sol) polarization free energy of solvation -77.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds