Wall clock time and date at job start Tue Mar 31 2020 18:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86807 * 120.00092 * 2 1 4 4 H 1.48502 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47166 * 299.99929 * 3 2 1 6 6 H 1.48500 * 109.47036 * 60.00183 * 3 2 1 7 7 C 1.38814 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00314 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99623 * 0.02562 * 7 2 1 10 10 C 1.46495 * 119.99651 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47043 * 175.59261 * 10 9 7 12 12 C 1.53005 * 115.54689 * 303.90343 * 11 10 9 13 13 C 1.53002 * 109.46923 * 278.02707 * 12 11 10 14 14 N 1.46502 * 109.46857 * 175.02630 * 13 12 11 15 15 C 1.34769 * 119.99693 * 180.02562 * 14 13 12 16 16 O 1.21280 * 120.00449 * 359.97438 * 15 14 13 17 17 C 1.50707 * 120.00076 * 180.02562 * 15 14 13 18 18 H 1.09004 * 109.45337 * 299.99989 * 17 15 14 19 19 C 1.53109 * 109.45989 * 180.02562 * 17 15 14 20 20 C 1.53418 * 109.57298 * 169.90172 * 19 17 15 21 21 C 1.50593 * 108.33710 * 49.82250 * 20 19 17 22 22 N 1.32914 * 129.16989 * 163.48156 * 21 20 19 23 23 N 1.29014 * 108.63591 * 180.14050 * 22 21 20 24 24 N 1.29104 * 110.26229 * 359.97102 * 23 22 21 25 25 H 0.97001 * 126.00567 * 179.97438 * 24 23 22 26 26 C 1.34393 * 107.98504 * 359.94071 * 24 23 22 27 27 C 1.50535 * 129.25995 * 180.21370 * 26 24 23 28 28 C 1.52995 * 117.51830 * 89.59844 * 11 10 9 29 29 C 1.52997 * 117.49950 * 158.23131 * 11 10 9 30 30 H 0.97004 * 120.00351 * 0.02562 * 1 2 3 31 31 H 0.96996 * 119.99876 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.47095 * 55.59554 * 10 9 7 33 33 H 1.09001 * 109.47717 * 295.59549 * 10 9 7 34 34 H 1.09005 * 109.46578 * 158.03448 * 12 11 10 35 35 H 1.08992 * 109.47338 * 38.03114 * 12 11 10 36 36 H 1.09000 * 109.47222 * 295.02831 * 13 12 11 37 37 H 1.08998 * 109.46953 * 55.02920 * 13 12 11 38 38 H 0.96994 * 119.99872 * 0.02562 * 14 13 12 39 39 H 1.09000 * 109.45345 * 289.93883 * 19 17 15 40 40 H 1.09002 * 109.45265 * 49.89600 * 19 17 15 41 41 H 1.09011 * 109.68841 * 169.52666 * 20 19 17 42 42 H 1.08998 * 109.69596 * 290.06387 * 20 19 17 43 43 H 1.08999 * 109.67612 * 43.76141 * 27 26 24 44 44 H 1.08994 * 109.70549 * 283.18377 * 27 26 24 45 45 H 1.08998 * 117.50058 * 214.97265 * 28 11 10 46 46 H 1.09003 * 117.50109 * 0.02562 * 28 11 10 47 47 H 1.08992 * 117.50066 * 359.97438 * 29 11 10 48 48 H 1.08998 * 117.49622 * 144.97779 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6567 0.0005 11 6 1.0675 -4.8176 0.1114 12 6 0.1319 -4.7734 1.3213 13 6 0.8589 -5.3269 2.5485 14 7 0.0066 -5.1754 3.7305 15 6 0.4431 -5.5957 4.9342 16 8 1.5412 -6.0998 5.0391 17 6 -0.4338 -5.4405 6.1501 18 1 -0.6567 -4.3847 6.3045 19 6 0.2945 -5.9931 7.3782 20 6 -0.4779 -5.6130 8.6481 21 6 -1.9238 -5.9857 8.4524 22 7 -2.8863 -6.1200 9.3593 23 7 -3.9769 -6.4541 8.7565 24 7 -3.7748 -6.5459 7.4847 25 1 -4.4380 -6.7828 6.8176 26 6 -2.4844 -6.2548 7.2475 27 6 -1.7422 -6.2133 5.9385 28 6 0.5123 -5.3999 -1.1900 29 6 1.5335 -6.1925 -0.3715 30 1 -0.4851 0.8400 -0.0004 31 1 0.3555 -2.3881 -0.0002 32 1 2.7425 -3.6810 0.8484 33 1 2.6242 -3.7495 -0.9262 34 1 -0.7521 -5.3784 1.1192 35 1 -0.1685 -3.7430 1.5109 36 1 1.0812 -6.3827 2.3937 37 1 1.7886 -4.7780 2.6983 38 1 -0.8717 -4.7726 3.6466 39 1 0.3593 -7.0787 7.3039 40 1 1.2988 -5.5718 7.4248 41 1 -0.0711 -6.1555 9.5016 42 1 -0.3947 -4.5402 8.8214 43 1 -2.3500 -5.7082 5.1878 44 1 -1.5202 -7.2285 5.6096 45 1 -0.5193 -5.7516 -1.1842 46 1 0.8530 -4.9563 -2.1255 47 1 2.5456 -6.2700 -0.7686 48 1 1.1739 -7.0656 0.1729 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167724310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:27 Heat of formation + Delta-G solvation = 75.093845 kcal Electronic energy + Delta-G solvation = -28162.999312 eV Core-core repulsion = 24255.239215 eV Total energy + Delta-G solvation = -3907.760096 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.80109 -40.17996 -38.41010 -36.89616 -34.92908 -34.23148 -33.98071 -31.21802 -30.81420 -30.64050 -29.53272 -26.06149 -25.20012 -23.97244 -23.21755 -22.90826 -22.70756 -21.83373 -20.86433 -19.82646 -18.71497 -18.40240 -17.24187 -17.08041 -16.52686 -16.04726 -15.90929 -15.31385 -14.85029 -14.51147 -14.36982 -14.33328 -14.17290 -13.93535 -13.84340 -13.32175 -13.12295 -12.77266 -12.52991 -12.36184 -12.32840 -11.96970 -11.89094 -11.56915 -11.47671 -11.39158 -11.18309 -10.98423 -10.94273 -10.88274 -10.67148 -10.64041 -10.16600 -9.96678 -9.89453 -9.68034 -9.38056 -9.26124 -9.07114 -8.88302 -6.94245 -5.80527 -3.08159 1.16199 2.17326 2.24443 2.57040 3.04924 3.40760 3.47220 3.48826 3.81321 4.00058 4.08977 4.30821 4.34784 4.55045 4.57826 4.68151 4.86079 4.92033 4.97120 5.03293 5.04330 5.10024 5.18521 5.26434 5.31810 5.41218 5.49687 5.56192 5.63103 5.64628 5.70433 5.75668 5.84814 5.85339 5.98731 6.10793 6.13871 6.15314 6.37323 6.39549 6.40016 6.44384 6.54433 6.72133 6.79137 7.41487 7.68016 8.09396 8.12288 8.38808 9.50703 10.08321 10.43858 11.42419 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011544 B = 0.002465 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.816131 B =11356.003379 C =12499.335169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.728 5.728 10 C 0.187 3.813 11 C -0.118 4.118 12 C -0.092 4.092 13 C 0.125 3.875 14 N -0.725 5.725 15 C 0.518 3.482 16 O -0.535 6.535 17 C -0.104 4.104 18 H 0.108 0.892 19 C -0.100 4.100 20 C -0.035 4.035 21 C -0.013 4.013 22 N -0.258 5.258 23 N -0.089 5.089 24 N -0.381 5.381 25 H 0.449 0.551 26 C -0.012 4.012 27 C -0.037 4.037 28 C -0.167 4.167 29 C -0.178 4.178 30 H 0.254 0.746 31 H 0.384 0.616 32 H 0.026 0.974 33 H 0.018 0.982 34 H 0.060 0.940 35 H 0.090 0.910 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.400 0.600 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.088 0.912 46 H 0.095 0.905 47 H 0.092 0.908 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.007 -16.597 10.526 20.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.372 5.372 10 C 0.060 3.940 11 C -0.119 4.119 12 C -0.130 4.130 13 C 0.002 3.998 14 N -0.376 5.376 15 C 0.303 3.697 16 O -0.412 6.412 17 C -0.126 4.126 18 H 0.126 0.874 19 C -0.138 4.138 20 C -0.075 4.075 21 C -0.153 4.153 22 N -0.124 5.124 23 N -0.068 5.068 24 N -0.101 5.101 25 H 0.294 0.706 26 C -0.148 4.148 27 C -0.077 4.077 28 C -0.204 4.204 29 C -0.215 4.215 30 H 0.064 0.936 31 H 0.218 0.782 32 H 0.044 0.956 33 H 0.035 0.965 34 H 0.079 0.921 35 H 0.108 0.892 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.234 0.766 39 H 0.093 0.907 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.109 0.891 44 H 0.112 0.888 45 H 0.106 0.894 46 H 0.113 0.887 47 H 0.111 0.889 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.030 -16.940 11.858 21.539 hybrid contribution -0.213 1.144 -1.508 1.905 sum -6.243 -15.796 10.349 19.890 Atomic orbital electron populations 1.69657 1.05066 1.25465 1.58092 1.24707 0.95520 0.97610 1.03132 0.86141 0.78863 0.84179 0.77175 1.20564 1.21906 1.21883 1.19280 0.91072 0.84137 1.42273 0.91200 1.42308 1.05853 0.99680 1.89346 1.20182 0.91893 0.84188 0.97776 1.21565 1.00874 0.94878 0.94574 1.21266 0.96674 1.02956 0.92086 1.21374 0.94336 1.00889 0.83236 1.46082 1.20857 1.62682 1.07975 1.20320 0.87262 0.78038 0.84071 1.90721 1.21319 1.43610 1.85519 1.21384 0.94008 1.02622 0.94545 0.87407 1.21479 0.99412 1.02175 0.90778 1.20043 0.86031 1.02416 0.98968 1.21811 0.98302 1.06422 0.88753 1.74843 0.95831 1.14676 1.27031 1.78585 1.20026 1.20041 0.88174 1.44697 1.09642 1.46666 1.09054 0.70577 1.21763 0.85646 1.07985 0.99369 1.20128 0.94006 1.02477 0.91096 1.22996 0.98197 1.03504 0.95674 1.22961 0.99693 0.94445 1.04412 0.93640 0.78183 0.95607 0.96460 0.92089 0.89191 0.91782 0.90826 0.76601 0.90688 0.89084 0.89155 0.89430 0.89150 0.88817 0.89355 0.88698 0.88932 0.89249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.32 13.06 55.49 0.72 -26.59 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.24 -6.45 9.99 -15.05 -0.15 -6.60 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.73 -17.55 5.23 -59.91 -0.31 -17.86 16 10 C 0.19 3.63 6.15 -4.04 -0.02 3.60 16 11 C -0.12 -1.76 1.65 -154.51 -0.25 -2.01 16 12 C -0.09 -1.22 5.20 -26.73 -0.14 -1.36 16 13 C 0.12 1.58 5.49 -4.04 -0.02 1.56 16 14 N -0.72 -7.54 5.46 -60.29 -0.33 -7.87 16 15 C 0.52 5.73 7.13 -10.99 -0.08 5.65 16 16 O -0.54 -8.03 15.81 5.56 0.09 -7.95 16 17 C -0.10 -0.80 2.50 -91.49 -0.23 -1.03 16 18 H 0.11 0.77 8.12 -51.93 -0.42 0.35 16 19 C -0.10 -0.80 4.64 -26.46 -0.12 -0.93 16 20 C -0.04 -0.28 6.30 -27.72 -0.17 -0.45 16 21 C -0.01 -0.13 7.11 -83.12 -0.59 -0.72 16 22 N -0.26 -3.15 12.40 33.16 0.41 -2.74 16 23 N -0.09 -0.98 13.40 60.35 0.81 -0.17 16 24 N -0.38 -2.78 6.97 33.39 0.23 -2.55 16 25 H 0.45 1.47 8.96 -190.08 -1.70 -0.23 16 26 C -0.01 -0.09 7.15 -82.50 -0.59 -0.68 16 27 C -0.04 -0.22 5.43 -27.74 -0.15 -0.37 16 28 C -0.17 -2.26 9.87 -26.73 -0.26 -2.52 16 29 C -0.18 -2.19 9.58 -26.73 -0.26 -2.45 16 30 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.38 9.64 6.80 -40.82 -0.28 9.37 16 32 H 0.03 0.52 7.96 -51.93 -0.41 0.11 16 33 H 0.02 0.35 8.10 -51.93 -0.42 -0.07 16 34 H 0.06 0.68 7.93 -51.93 -0.41 0.27 16 35 H 0.09 1.44 6.94 -51.93 -0.36 1.07 16 36 H 0.06 0.79 7.72 -51.93 -0.40 0.39 16 37 H 0.07 1.14 7.96 -51.93 -0.41 0.72 16 38 H 0.40 3.22 8.14 -40.82 -0.33 2.88 16 39 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 40 H 0.09 0.80 7.76 -51.93 -0.40 0.40 16 41 H 0.09 0.65 8.14 -51.92 -0.42 0.23 16 42 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.09 0.34 7.90 -51.93 -0.41 -0.07 16 44 H 0.09 0.51 8.12 -51.93 -0.42 0.09 16 45 H 0.09 1.07 8.07 -51.93 -0.42 0.65 16 46 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 47 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.09 0.96 7.90 -51.93 -0.41 0.55 16 LS Contribution 392.08 15.07 5.91 5.91 Total: -1.00 -34.75 392.08 -9.51 -44.26 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -8.88 Total: 7.30 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -3.14 Total: -8.80 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: 1.53 Total: -57.79 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: 0.09 Total: -7.95 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.75 -9.51 -44.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167724310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.356 kcal (2) G-P(sol) polarization free energy of solvation -34.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds