Wall clock time and date at job start Tue Mar 31 2020 18:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86807 * 120.00092 * 2 1 4 4 H 1.48502 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47166 * 299.99929 * 3 2 1 6 6 H 1.48500 * 109.47036 * 60.00183 * 3 2 1 7 7 C 1.38814 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00314 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99623 * 0.02562 * 7 2 1 10 10 C 1.46495 * 119.99651 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47043 * 175.59261 * 10 9 7 12 12 C 1.53005 * 115.54689 * 303.90343 * 11 10 9 13 13 C 1.53002 * 109.46923 * 278.02707 * 12 11 10 14 14 N 1.46502 * 109.46857 * 175.02630 * 13 12 11 15 15 C 1.34769 * 119.99693 * 180.02562 * 14 13 12 16 16 O 1.21280 * 120.00449 * 359.97438 * 15 14 13 17 17 C 1.50707 * 120.00076 * 180.02562 * 15 14 13 18 18 H 1.09004 * 109.45337 * 299.99989 * 17 15 14 19 19 C 1.53109 * 109.45989 * 180.02562 * 17 15 14 20 20 C 1.53418 * 109.57298 * 169.90172 * 19 17 15 21 21 C 1.50593 * 108.33710 * 49.82250 * 20 19 17 22 22 N 1.32914 * 129.16989 * 163.48156 * 21 20 19 23 23 N 1.29014 * 108.63591 * 180.14050 * 22 21 20 24 24 N 1.29104 * 110.26229 * 359.97102 * 23 22 21 25 25 H 0.97001 * 126.00567 * 179.97438 * 24 23 22 26 26 C 1.34393 * 107.98504 * 359.94071 * 24 23 22 27 27 C 1.50535 * 129.25995 * 180.21370 * 26 24 23 28 28 C 1.52995 * 117.51830 * 89.59844 * 11 10 9 29 29 C 1.52997 * 117.49950 * 158.23131 * 11 10 9 30 30 H 0.97004 * 120.00351 * 0.02562 * 1 2 3 31 31 H 0.96996 * 119.99876 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.47095 * 55.59554 * 10 9 7 33 33 H 1.09001 * 109.47717 * 295.59549 * 10 9 7 34 34 H 1.09005 * 109.46578 * 158.03448 * 12 11 10 35 35 H 1.08992 * 109.47338 * 38.03114 * 12 11 10 36 36 H 1.09000 * 109.47222 * 295.02831 * 13 12 11 37 37 H 1.08998 * 109.46953 * 55.02920 * 13 12 11 38 38 H 0.96994 * 119.99872 * 0.02562 * 14 13 12 39 39 H 1.09000 * 109.45345 * 289.93883 * 19 17 15 40 40 H 1.09002 * 109.45265 * 49.89600 * 19 17 15 41 41 H 1.09011 * 109.68841 * 169.52666 * 20 19 17 42 42 H 1.08998 * 109.69596 * 290.06387 * 20 19 17 43 43 H 1.08999 * 109.67612 * 43.76141 * 27 26 24 44 44 H 1.08994 * 109.70549 * 283.18377 * 27 26 24 45 45 H 1.08998 * 117.50058 * 214.97265 * 28 11 10 46 46 H 1.09003 * 117.50109 * 0.02562 * 28 11 10 47 47 H 1.08992 * 117.50066 * 359.97438 * 29 11 10 48 48 H 1.08998 * 117.49622 * 144.97779 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6567 0.0005 11 6 1.0675 -4.8176 0.1114 12 6 0.1319 -4.7734 1.3213 13 6 0.8589 -5.3269 2.5485 14 7 0.0066 -5.1754 3.7305 15 6 0.4431 -5.5957 4.9342 16 8 1.5412 -6.0998 5.0391 17 6 -0.4338 -5.4405 6.1501 18 1 -0.6567 -4.3847 6.3045 19 6 0.2945 -5.9931 7.3782 20 6 -0.4779 -5.6130 8.6481 21 6 -1.9238 -5.9857 8.4524 22 7 -2.8863 -6.1200 9.3593 23 7 -3.9769 -6.4541 8.7565 24 7 -3.7748 -6.5459 7.4847 25 1 -4.4380 -6.7828 6.8176 26 6 -2.4844 -6.2548 7.2475 27 6 -1.7422 -6.2133 5.9385 28 6 0.5123 -5.3999 -1.1900 29 6 1.5335 -6.1925 -0.3715 30 1 -0.4851 0.8400 -0.0004 31 1 0.3555 -2.3881 -0.0002 32 1 2.7425 -3.6810 0.8484 33 1 2.6242 -3.7495 -0.9262 34 1 -0.7521 -5.3784 1.1192 35 1 -0.1685 -3.7430 1.5109 36 1 1.0812 -6.3827 2.3937 37 1 1.7886 -4.7780 2.6983 38 1 -0.8717 -4.7726 3.6466 39 1 0.3593 -7.0787 7.3039 40 1 1.2988 -5.5718 7.4248 41 1 -0.0711 -6.1555 9.5016 42 1 -0.3947 -4.5402 8.8214 43 1 -2.3500 -5.7082 5.1878 44 1 -1.5202 -7.2285 5.6096 45 1 -0.5193 -5.7516 -1.1842 46 1 0.8530 -4.9563 -2.1255 47 1 2.5456 -6.2700 -0.7686 48 1 1.1739 -7.0656 0.1729 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167724310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:26 Heat of formation + Delta-G solvation = 50.356991 kcal Electronic energy + Delta-G solvation = -28164.071982 eV Core-core repulsion = 24255.239215 eV Total energy + Delta-G solvation = -3908.832767 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.48324 -41.06308 -39.56839 -37.62961 -36.06783 -35.72023 -34.91518 -32.77839 -32.00236 -31.28808 -30.43387 -27.80264 -25.97276 -24.80730 -24.59550 -23.93120 -23.69985 -22.88257 -21.71459 -20.57561 -19.85582 -19.20002 -18.99233 -17.98963 -17.29422 -16.97076 -16.82656 -16.64773 -16.24845 -15.76522 -15.38796 -15.16056 -15.04332 -14.88464 -14.74551 -14.62349 -14.40971 -14.07681 -13.89369 -13.16054 -13.13092 -13.06008 -12.96522 -12.81655 -12.61770 -12.49973 -12.25562 -12.20839 -12.06719 -12.06085 -11.92499 -11.79418 -11.59692 -11.33191 -11.09247 -10.92911 -10.81384 -10.49266 -10.02956 -9.92074 -8.95389 -7.94250 -5.20892 0.51795 1.43615 1.47037 1.47901 1.56643 1.57216 1.85304 2.20812 2.55135 2.93209 3.19775 3.39452 3.46190 3.67243 3.75157 3.86424 3.88537 3.95167 3.98553 4.03338 4.14086 4.24412 4.32172 4.37494 4.45570 4.48916 4.53042 4.57056 4.70743 4.79415 4.85265 4.87325 4.98127 4.98677 5.02772 5.10808 5.12605 5.21546 5.24414 5.31995 5.34451 5.36784 5.43112 5.50719 5.52017 5.97760 6.28847 6.59469 7.27998 7.36424 7.38375 8.12425 8.38508 9.28967 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011544 B = 0.002465 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.816131 B =11356.003379 C =12499.335169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.070 4.070 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.243 4.243 8 H 0.068 0.932 9 N -0.734 5.734 10 C 0.186 3.814 11 C -0.139 4.139 12 C -0.078 4.078 13 C 0.134 3.866 14 N -0.716 5.716 15 C 0.519 3.481 16 O -0.578 6.578 17 C -0.096 4.096 18 H 0.119 0.881 19 C -0.095 4.095 20 C -0.030 4.030 21 C -0.032 4.032 22 N -0.295 5.295 23 N -0.117 5.117 24 N -0.363 5.363 25 H 0.466 0.534 26 C 0.003 3.997 27 C -0.031 4.031 28 C -0.165 4.165 29 C -0.152 4.152 30 H 0.251 0.749 31 H 0.378 0.622 32 H 0.016 0.984 33 H 0.011 0.989 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.038 0.962 38 H 0.414 0.586 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.121 0.879 44 H 0.105 0.895 45 H 0.109 0.891 46 H 0.079 0.921 47 H 0.093 0.907 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.718 -17.748 9.904 21.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.262 4.262 3 Si 0.796 3.204 4 H -0.196 1.196 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.375 4.375 8 H 0.086 0.914 9 N -0.377 5.377 10 C 0.060 3.940 11 C -0.140 4.140 12 C -0.116 4.116 13 C 0.010 3.990 14 N -0.368 5.368 15 C 0.306 3.694 16 O -0.457 6.457 17 C -0.118 4.118 18 H 0.137 0.863 19 C -0.133 4.133 20 C -0.069 4.069 21 C -0.173 4.173 22 N -0.160 5.160 23 N -0.096 5.096 24 N -0.084 5.084 25 H 0.315 0.685 26 C -0.134 4.134 27 C -0.070 4.070 28 C -0.202 4.202 29 C -0.189 4.189 30 H 0.060 0.940 31 H 0.211 0.789 32 H 0.034 0.966 33 H 0.029 0.971 34 H 0.110 0.890 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.057 0.943 38 H 0.250 0.750 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.139 0.861 44 H 0.123 0.877 45 H 0.128 0.872 46 H 0.098 0.902 47 H 0.112 0.888 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.769 -18.113 11.226 22.359 hybrid contribution 0.081 1.459 -1.375 2.006 sum -6.688 -16.655 9.852 20.474 Atomic orbital electron populations 1.69784 1.06241 1.25851 1.59536 1.25427 0.96385 1.00580 1.03838 0.85182 0.78171 0.80350 0.76725 1.19578 1.22030 1.21957 1.19607 0.91281 0.85566 1.41041 0.91366 1.42435 1.05681 1.00540 1.89069 1.20238 0.92752 0.84269 0.96743 1.21413 1.01364 0.94802 0.96418 1.21116 0.97306 1.01687 0.91488 1.21147 0.93259 1.00741 0.83865 1.45991 1.21159 1.62334 1.07310 1.20812 0.86937 0.76895 0.84728 1.90708 1.23302 1.45589 1.86124 1.21338 0.94261 1.03643 0.92563 0.86340 1.21400 0.98964 1.01847 0.91117 1.20026 0.85195 1.02804 0.98890 1.22164 0.98768 1.07073 0.89298 1.74796 0.96717 1.16023 1.28470 1.78510 1.20051 1.21440 0.89575 1.44695 1.09971 1.45233 1.08539 0.68479 1.21954 0.85573 1.06448 0.99469 1.20196 0.92903 1.03229 0.90665 1.23055 0.99736 1.03261 0.94188 1.23044 0.99618 0.93455 1.02772 0.94020 0.78931 0.96580 0.97107 0.88962 0.92232 0.90782 0.94316 0.74959 0.91074 0.90150 0.88912 0.88853 0.86127 0.87658 0.87228 0.90209 0.88809 0.86615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.82 13.06 21.65 0.28 -56.54 16 2 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 3 Si 0.97 45.57 29.55 68.60 2.03 47.60 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 6 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 7 C -0.24 -13.38 9.99 84.03 0.84 -12.54 16 8 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 9 N -0.73 -35.88 5.23 -343.45 -1.79 -37.67 16 10 C 0.19 7.28 6.15 86.38 0.53 7.81 16 11 C -0.14 -3.95 1.65 -52.18 -0.09 -4.04 16 12 C -0.08 -1.93 5.20 30.60 0.16 -1.77 16 13 C 0.13 3.20 5.49 86.38 0.47 3.67 16 14 N -0.72 -13.49 5.46 -463.05 -2.53 -16.01 16 15 C 0.52 10.68 7.13 87.66 0.63 11.31 16 16 O -0.58 -17.03 15.81 -3.03 -0.05 -17.08 16 17 C -0.10 -1.30 2.50 -11.36 -0.03 -1.33 16 18 H 0.12 1.41 8.12 -2.38 -0.02 1.39 16 19 C -0.09 -1.43 4.64 30.77 0.14 -1.29 16 20 C -0.03 -0.45 6.30 29.95 0.19 -0.26 16 21 C -0.03 -0.60 7.11 41.75 0.30 -0.30 16 22 N -0.29 -7.10 12.40 -48.99 -0.61 -7.71 16 23 N -0.12 -2.48 13.40 37.02 0.50 -1.99 16 24 N -0.36 -4.57 6.97 -48.27 -0.34 -4.91 16 25 H 0.47 1.87 8.96 -219.68 -1.97 -0.10 16 26 C 0.00 0.03 7.15 41.50 0.30 0.33 16 27 C -0.03 -0.26 5.43 29.94 0.16 -0.09 16 28 C -0.17 -4.10 9.87 30.59 0.30 -3.80 16 29 C -0.15 -3.31 9.58 30.59 0.29 -3.01 16 30 H 0.25 14.35 8.31 -92.71 -0.77 13.57 16 31 H 0.38 19.24 6.80 -92.71 -0.63 18.61 16 32 H 0.02 0.66 7.96 -2.39 -0.02 0.64 16 33 H 0.01 0.44 8.10 -2.39 -0.02 0.42 16 34 H 0.09 1.71 7.93 -2.38 -0.02 1.70 16 35 H 0.06 1.86 6.94 -2.39 -0.02 1.85 16 36 H 0.07 1.64 7.72 -2.39 -0.02 1.62 16 37 H 0.04 1.20 7.96 -2.39 -0.02 1.18 16 38 H 0.41 5.50 8.14 -92.71 -0.75 4.75 16 39 H 0.07 1.13 8.12 -2.39 -0.02 1.11 16 40 H 0.08 1.40 7.76 -2.39 -0.02 1.38 16 41 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 42 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.12 0.36 7.90 -2.39 -0.02 0.34 16 44 H 0.11 0.76 8.12 -2.39 -0.02 0.74 16 45 H 0.11 2.26 8.07 -2.39 -0.02 2.24 16 46 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 47 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 48 H 0.12 1.98 7.90 -2.39 -0.02 1.96 16 Total: -1.00 -76.69 392.08 -0.19 -76.88 By element: Atomic # 1 Polarization: 28.55 SS G_CDS: -2.35 Total: 26.19 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: 4.66 Total: -8.76 kcal Atomic # 7 Polarization: -120.35 SS G_CDS: -4.49 Total: -124.84 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.05 Total: -17.08 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -76.69 -0.19 -76.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167724310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.241 kcal (2) G-P(sol) polarization free energy of solvation -76.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds