Wall clock time and date at job start Tue Mar 31 2020 18:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 120.00317 * 2 1 4 4 H 1.48501 * 109.47145 * 240.00096 * 3 2 1 5 5 H 1.48501 * 109.47223 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47163 * 120.00270 * 3 2 1 7 7 C 1.37878 * 119.99664 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99989 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00047 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47384 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47133 * 179.97438 * 10 9 7 12 12 N 1.46505 * 109.46905 * 180.02562 * 11 10 9 13 13 C 1.38631 * 119.99932 * 180.02562 * 12 11 10 14 14 C 1.39170 * 120.48376 * 0.29559 * 13 12 11 15 15 C 1.39133 * 118.26401 * 180.23678 * 14 13 12 16 16 N 1.38632 * 120.47955 * 179.74048 * 15 14 13 17 17 C 1.46846 * 110.99711 * 179.72773 * 16 15 14 18 18 C 1.53035 * 109.52744 * 185.84108 * 17 16 15 19 19 C 1.53124 * 109.27475 * 300.82106 * 18 17 16 20 20 C 1.50702 * 109.52429 * 177.55754 * 19 18 17 21 21 N 1.34780 * 119.99617 * 60.31322 * 20 19 18 22 22 O 1.21278 * 120.00003 * 240.31977 * 20 19 18 23 23 C 1.53123 * 109.16220 * 57.64849 * 19 18 17 24 24 C 1.46846 * 111.00106 * 303.93594 * 16 15 14 25 25 N 1.33196 * 119.03123 * 359.47307 * 15 14 13 26 26 C 1.31725 * 120.87752 * 0.26530 * 25 15 14 27 27 N 1.31757 * 121.91947 * 0.02562 * 26 25 15 28 28 H 0.97001 * 119.99369 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47076 * 60.00014 * 9 7 2 30 30 H 1.08999 * 109.46809 * 300.00253 * 9 7 2 31 31 H 1.09002 * 109.46932 * 60.00012 * 10 9 7 32 32 H 1.09000 * 109.47034 * 300.00328 * 10 9 7 33 33 H 1.08996 * 109.46889 * 60.00738 * 11 10 9 34 34 H 1.08995 * 109.47543 * 299.99753 * 11 10 9 35 35 H 0.97002 * 119.99971 * 0.02562 * 12 11 10 36 36 H 1.07996 * 120.86931 * 0.02562 * 14 13 12 37 37 H 1.09008 * 109.46456 * 305.85576 * 17 16 15 38 38 H 1.09003 * 109.46474 * 65.82081 * 17 16 15 39 39 H 1.08993 * 109.50220 * 60.75645 * 18 17 16 40 40 H 1.08992 * 109.50519 * 180.88040 * 18 17 16 41 41 H 1.09001 * 109.52183 * 297.74731 * 19 18 17 42 42 H 0.96994 * 120.00123 * 0.02562 * 21 20 19 43 43 H 0.97000 * 119.99593 * 179.97438 * 21 20 19 44 44 H 1.09001 * 109.50279 * 182.40035 * 23 19 18 45 45 H 1.09000 * 109.49827 * 62.29028 * 23 19 18 46 46 H 1.09009 * 109.46169 * 294.17614 * 24 16 15 47 47 H 1.08995 * 109.46611 * 54.14470 * 24 16 15 48 48 H 1.08001 * 119.04107 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0018 11 6 1.4799 -4.9871 -0.0012 12 7 2.4319 -6.1007 -0.0018 13 6 1.9697 -7.4077 -0.0019 14 6 0.6036 -7.6735 -0.0076 15 6 0.1909 -9.0022 -0.0024 16 7 -1.1587 -9.3193 -0.0024 17 6 -1.3573 -10.7743 -0.0029 18 6 -2.8482 -11.0869 -0.1496 19 6 -3.6152 -10.4488 1.0119 20 6 -5.0908 -10.7024 0.8408 21 7 -5.5576 -11.9663 0.8055 22 8 -5.8582 -9.7693 0.7348 23 6 -3.3526 -8.9402 1.0190 24 6 -1.8471 -8.6899 1.1318 25 7 1.1113 -9.9650 -0.0029 26 6 2.3957 -9.6723 -0.0030 27 7 2.8265 -8.4272 -0.0022 28 1 -0.4849 0.8401 0.0004 29 1 0.6239 -2.5567 -0.8903 30 1 0.6246 -2.5570 0.8897 31 1 2.8724 -3.6049 0.8877 32 1 2.8710 -3.6041 -0.8922 33 1 0.8524 -5.0447 -0.8905 34 1 0.8543 -5.0450 0.8895 35 1 3.3856 -5.9235 -0.0021 36 1 -0.1173 -6.8694 -0.0125 37 1 -0.8101 -11.2152 -0.8362 38 1 -0.9892 -11.1915 0.9344 39 1 -3.2138 -10.6820 -1.0932 40 1 -2.9968 -12.1666 -0.1343 41 1 -3.2769 -10.8818 1.9533 42 1 -4.9439 -12.7125 0.8906 43 1 -6.5075 -12.1295 0.6958 44 1 -3.8618 -8.4863 1.8692 45 1 -3.7262 -8.5015 0.0938 46 1 -1.4768 -9.1169 2.0638 47 1 -1.6557 -7.6169 1.1227 48 1 3.1166 -10.4765 -0.0031 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168427413.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:10 Heat of formation + Delta-G solvation = 0.476465 kcal Electronic energy + Delta-G solvation = -27811.343679 eV Core-core repulsion = 23900.347930 eV Total energy + Delta-G solvation = -3910.995749 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.25432 -40.26533 -38.58916 -36.73592 -34.70881 -34.02493 -33.68331 -32.21637 -31.32395 -30.99669 -29.83521 -26.73764 -26.11886 -24.53251 -23.33019 -22.89705 -22.11675 -21.15439 -20.46847 -20.00316 -18.22591 -17.80448 -17.62867 -17.00357 -16.37890 -15.69912 -15.51819 -15.35797 -15.22115 -15.07418 -14.77727 -14.52708 -14.45627 -14.37443 -14.07534 -13.84793 -13.54492 -13.38789 -12.56784 -12.34753 -12.33848 -11.98289 -11.87798 -11.59640 -11.25393 -11.07051 -11.05785 -10.86511 -10.82377 -10.64061 -10.51329 -10.25707 -10.14377 -10.08394 -9.84780 -9.55952 -9.21966 -9.17525 -8.63091 -8.41085 -7.97542 -6.06064 -4.09213 1.15048 1.47538 2.26974 3.09147 3.11073 3.30213 3.30469 3.35100 3.37562 3.97020 4.16054 4.26104 4.34778 4.41372 4.42889 4.66214 4.79523 4.87206 4.95273 4.99335 5.13405 5.20570 5.24387 5.29954 5.36421 5.47692 5.49236 5.58642 5.59772 5.66077 5.68508 5.76081 5.97002 5.98751 6.10649 6.36505 6.39268 6.47362 6.50734 6.80281 6.89993 6.90341 7.01787 7.42194 7.56346 7.68022 7.71762 7.87994 7.91795 8.32801 8.37993 8.96832 9.55343 11.05144 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011906 B = 0.002219 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.197136 B =12617.854155 C =14833.669039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.026 3.974 10 C -0.121 4.121 11 C 0.120 3.880 12 N -0.703 5.703 13 C 0.452 3.548 14 C -0.309 4.309 15 C 0.378 3.622 16 N -0.473 5.473 17 C 0.070 3.930 18 C -0.111 4.111 19 C -0.112 4.112 20 C 0.523 3.477 21 N -0.858 5.858 22 O -0.538 6.538 23 C -0.099 4.099 24 C 0.061 3.939 25 N -0.604 5.604 26 C 0.357 3.643 27 N -0.600 5.600 28 H 0.262 0.738 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.407 0.593 36 H 0.143 0.857 37 H 0.093 0.907 38 H 0.053 0.947 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.401 0.599 43 H 0.400 0.600 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.048 0.952 47 H 0.094 0.906 48 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.437 -28.698 2.516 29.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.159 4.159 11 C -0.003 4.003 12 N -0.333 5.333 13 C 0.209 3.791 14 C -0.340 4.340 15 C 0.142 3.858 16 N -0.191 5.191 17 C -0.056 4.056 18 C -0.149 4.149 19 C -0.134 4.134 20 C 0.307 3.693 21 N -0.421 5.421 22 O -0.414 6.414 23 C -0.137 4.137 24 C -0.065 4.065 25 N -0.330 5.330 26 C 0.065 3.935 27 N -0.326 5.326 28 H 0.072 0.928 29 H 0.038 0.962 30 H 0.037 0.963 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.243 0.757 36 H 0.161 0.839 37 H 0.111 0.889 38 H 0.071 0.929 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.116 0.884 42 H 0.229 0.771 43 H 0.231 0.769 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.067 0.933 47 H 0.112 0.888 48 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -5.767 -28.155 2.049 28.813 hybrid contribution 0.439 0.899 0.522 1.128 sum -5.329 -27.257 2.570 27.891 Atomic orbital electron populations 1.69948 1.06045 1.26889 1.50379 1.25023 0.94880 0.99330 0.95183 0.86630 0.79568 0.83009 0.78639 1.20210 1.21238 1.20226 1.21150 0.93002 0.90889 1.51206 0.92662 1.19021 0.93763 0.90811 0.97616 1.21884 0.99886 0.92827 1.01286 1.21808 0.91943 0.85180 1.01389 1.44926 1.10393 1.01289 1.76685 1.18405 0.88548 0.86263 0.85882 1.21507 0.95829 0.97294 1.19380 1.19594 0.88797 0.89212 0.88165 1.58799 1.06245 1.12499 1.41535 1.21950 0.95107 0.85463 1.03111 1.21691 0.94700 1.00249 0.98301 1.21463 0.91611 0.99199 1.01110 1.20630 0.90937 0.82725 0.74969 1.43908 1.12689 1.08031 1.77488 1.90775 1.59021 1.42811 1.48755 1.21467 0.94007 0.93320 1.04896 1.22316 0.93783 1.00718 0.89685 1.68294 1.02799 1.36661 1.25244 1.24326 0.89946 0.91603 0.87622 1.67973 1.39247 1.00039 1.25388 0.92817 0.96237 0.96266 0.92500 0.92461 0.91714 0.91855 0.75710 0.83927 0.88893 0.92874 0.90232 0.90540 0.88418 0.77088 0.76892 0.89839 0.89580 0.93331 0.88790 0.79241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.34 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.39 9.11 -34.44 -0.31 -14.71 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.12 -2.27 5.27 -26.73 -0.14 -2.41 16 11 C 0.12 1.88 4.92 -4.04 -0.02 1.86 16 12 N -0.70 -10.18 5.71 -60.33 -0.34 -10.52 16 13 C 0.45 6.62 7.70 -154.71 -1.19 5.43 16 14 C -0.31 -4.27 8.49 -38.90 -0.33 -4.60 16 15 C 0.38 4.83 6.40 -154.70 -0.99 3.84 16 16 N -0.47 -5.04 4.68 -173.13 -0.81 -5.85 16 17 C 0.07 0.58 4.67 -3.84 -0.02 0.57 16 18 C -0.11 -0.68 5.26 -26.65 -0.14 -0.82 16 19 C -0.11 -0.76 2.59 -91.64 -0.24 -1.00 16 20 C 0.52 4.30 7.43 -10.98 -0.08 4.22 16 21 N -0.86 -3.66 8.78 31.22 0.27 -3.38 16 22 O -0.54 -7.00 16.81 5.56 0.09 -6.91 16 23 C -0.10 -0.87 4.68 -26.65 -0.12 -1.00 16 24 C 0.06 0.57 5.25 -3.84 -0.02 0.55 16 25 N -0.60 -7.48 8.84 -13.88 -0.12 -7.60 16 26 C 0.36 4.28 12.28 -92.25 -1.13 3.15 16 27 N -0.60 -8.45 10.47 -13.88 -0.15 -8.60 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 1.03 7.96 -51.93 -0.41 0.62 16 34 H 0.06 0.98 7.98 -51.93 -0.41 0.57 16 35 H 0.41 5.58 8.60 -40.82 -0.35 5.23 16 36 H 0.14 1.93 6.03 -52.49 -0.32 1.61 16 37 H 0.09 0.84 7.73 -51.92 -0.40 0.44 16 38 H 0.05 0.43 8.12 -51.93 -0.42 0.01 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.26 7.66 -51.93 -0.40 -0.13 16 41 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.40 0.52 8.32 -40.82 -0.34 0.19 16 43 H 0.40 1.47 8.93 -40.82 -0.36 1.11 16 44 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.09 0.91 8.04 -51.93 -0.42 0.50 16 46 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 47 H 0.09 0.94 6.76 -51.93 -0.35 0.59 16 48 H 0.19 1.58 8.06 -52.49 -0.42 1.15 16 LS Contribution 389.30 15.07 5.87 5.87 Total: -1.00 -33.87 389.30 -11.98 -45.85 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -7.53 Total: 3.36 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -4.98 Total: -2.92 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: -0.41 Total: -61.57 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: 0.09 Total: -6.91 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.87 -11.98 -45.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427413.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.329 kcal (2) G-P(sol) polarization free energy of solvation -33.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds