Wall clock time and date at job start Tue Mar 31 2020 18:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 120.00317 * 2 1 4 4 H 1.48501 * 109.47145 * 240.00096 * 3 2 1 5 5 H 1.48501 * 109.47223 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47163 * 120.00270 * 3 2 1 7 7 C 1.37878 * 119.99664 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99989 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00047 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47384 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47133 * 179.97438 * 10 9 7 12 12 N 1.46505 * 109.46905 * 180.02562 * 11 10 9 13 13 C 1.38631 * 119.99932 * 180.02562 * 12 11 10 14 14 C 1.39170 * 120.48376 * 0.29559 * 13 12 11 15 15 C 1.39133 * 118.26401 * 180.23678 * 14 13 12 16 16 N 1.38632 * 120.47955 * 179.74048 * 15 14 13 17 17 C 1.46846 * 110.99711 * 179.72773 * 16 15 14 18 18 C 1.53035 * 109.52744 * 185.84108 * 17 16 15 19 19 C 1.53124 * 109.27475 * 300.82106 * 18 17 16 20 20 C 1.50702 * 109.52429 * 177.55754 * 19 18 17 21 21 N 1.34780 * 119.99617 * 60.31322 * 20 19 18 22 22 O 1.21278 * 120.00003 * 240.31977 * 20 19 18 23 23 C 1.53123 * 109.16220 * 57.64849 * 19 18 17 24 24 C 1.46846 * 111.00106 * 303.93594 * 16 15 14 25 25 N 1.33196 * 119.03123 * 359.47307 * 15 14 13 26 26 C 1.31725 * 120.87752 * 0.26530 * 25 15 14 27 27 N 1.31757 * 121.91947 * 0.02562 * 26 25 15 28 28 H 0.97001 * 119.99369 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47076 * 60.00014 * 9 7 2 30 30 H 1.08999 * 109.46809 * 300.00253 * 9 7 2 31 31 H 1.09002 * 109.46932 * 60.00012 * 10 9 7 32 32 H 1.09000 * 109.47034 * 300.00328 * 10 9 7 33 33 H 1.08996 * 109.46889 * 60.00738 * 11 10 9 34 34 H 1.08995 * 109.47543 * 299.99753 * 11 10 9 35 35 H 0.97002 * 119.99971 * 0.02562 * 12 11 10 36 36 H 1.07996 * 120.86931 * 0.02562 * 14 13 12 37 37 H 1.09008 * 109.46456 * 305.85576 * 17 16 15 38 38 H 1.09003 * 109.46474 * 65.82081 * 17 16 15 39 39 H 1.08993 * 109.50220 * 60.75645 * 18 17 16 40 40 H 1.08992 * 109.50519 * 180.88040 * 18 17 16 41 41 H 1.09001 * 109.52183 * 297.74731 * 19 18 17 42 42 H 0.96994 * 120.00123 * 0.02562 * 21 20 19 43 43 H 0.97000 * 119.99593 * 179.97438 * 21 20 19 44 44 H 1.09001 * 109.50279 * 182.40035 * 23 19 18 45 45 H 1.09000 * 109.49827 * 62.29028 * 23 19 18 46 46 H 1.09009 * 109.46169 * 294.17614 * 24 16 15 47 47 H 1.08995 * 109.46611 * 54.14470 * 24 16 15 48 48 H 1.08001 * 119.04107 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0018 11 6 1.4799 -4.9871 -0.0012 12 7 2.4319 -6.1007 -0.0018 13 6 1.9697 -7.4077 -0.0019 14 6 0.6036 -7.6735 -0.0076 15 6 0.1909 -9.0022 -0.0024 16 7 -1.1587 -9.3193 -0.0024 17 6 -1.3573 -10.7743 -0.0029 18 6 -2.8482 -11.0869 -0.1496 19 6 -3.6152 -10.4488 1.0119 20 6 -5.0908 -10.7024 0.8408 21 7 -5.5576 -11.9663 0.8055 22 8 -5.8582 -9.7693 0.7348 23 6 -3.3526 -8.9402 1.0190 24 6 -1.8471 -8.6899 1.1318 25 7 1.1113 -9.9650 -0.0029 26 6 2.3957 -9.6723 -0.0030 27 7 2.8265 -8.4272 -0.0022 28 1 -0.4849 0.8401 0.0004 29 1 0.6239 -2.5567 -0.8903 30 1 0.6246 -2.5570 0.8897 31 1 2.8724 -3.6049 0.8877 32 1 2.8710 -3.6041 -0.8922 33 1 0.8524 -5.0447 -0.8905 34 1 0.8543 -5.0450 0.8895 35 1 3.3856 -5.9235 -0.0021 36 1 -0.1173 -6.8694 -0.0125 37 1 -0.8101 -11.2152 -0.8362 38 1 -0.9892 -11.1915 0.9344 39 1 -3.2138 -10.6820 -1.0932 40 1 -2.9968 -12.1666 -0.1343 41 1 -3.2769 -10.8818 1.9533 42 1 -4.9439 -12.7125 0.8906 43 1 -6.5075 -12.1295 0.6958 44 1 -3.8618 -8.4863 1.8692 45 1 -3.7262 -8.5015 0.0938 46 1 -1.4768 -9.1169 2.0638 47 1 -1.6557 -7.6169 1.1227 48 1 3.1166 -10.4765 -0.0031 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168427413.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:09 Heat of formation + Delta-G solvation = -22.989970 kcal Electronic energy + Delta-G solvation = -27812.361260 eV Core-core repulsion = 23900.347930 eV Total energy + Delta-G solvation = -3912.013330 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.17224 -41.00109 -39.41164 -37.95440 -35.80397 -35.31717 -34.51268 -33.70642 -32.26284 -32.00610 -30.95735 -28.41592 -26.87509 -25.76149 -24.54465 -23.84427 -23.16574 -22.11577 -21.87391 -20.63589 -19.12076 -18.83003 -18.43871 -18.23729 -17.60825 -16.69716 -16.60359 -16.42587 -16.33253 -16.16206 -16.02354 -15.75443 -15.35030 -15.25613 -15.09355 -14.72536 -14.34177 -14.21885 -14.08250 -13.85411 -13.72755 -13.22039 -12.83901 -12.72848 -12.58503 -12.42945 -12.29623 -12.19540 -11.84843 -11.78769 -11.60518 -11.50424 -11.40868 -11.22961 -11.14614 -10.86242 -10.61810 -10.55196 -10.20824 -9.53265 -9.07585 -8.20669 -6.31358 0.16634 0.43240 1.40818 1.43099 1.51028 1.64576 2.01195 2.38539 2.42027 2.60242 2.97822 3.13223 3.38319 3.57621 3.67458 3.74224 3.87993 4.01173 4.09875 4.11098 4.17994 4.22944 4.32854 4.39654 4.47519 4.50706 4.59071 4.59800 4.67679 4.80884 4.90876 4.91447 4.91746 5.01653 5.13787 5.14233 5.25004 5.32066 5.49651 5.56862 5.70283 5.74394 5.83357 5.93045 6.08902 6.21966 6.35988 6.49281 6.63767 6.85311 7.37175 7.37973 7.38253 8.90823 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011906 B = 0.002219 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.197136 B =12617.854155 C =14833.669039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.963 3.037 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.027 3.973 10 C -0.104 4.104 11 C 0.138 3.862 12 N -0.703 5.703 13 C 0.441 3.559 14 C -0.326 4.326 15 C 0.379 3.621 16 N -0.483 5.483 17 C 0.071 3.929 18 C -0.102 4.102 19 C -0.105 4.105 20 C 0.521 3.479 21 N -0.835 5.835 22 O -0.595 6.595 23 C -0.096 4.096 24 C 0.066 3.934 25 N -0.601 5.601 26 C 0.356 3.644 27 N -0.614 5.614 28 H 0.264 0.736 29 H -0.004 1.004 30 H -0.002 1.002 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.411 0.589 36 H 0.137 0.863 37 H 0.087 0.913 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.114 0.886 41 H 0.125 0.875 42 H 0.419 0.581 43 H 0.406 0.594 44 H 0.080 0.920 45 H 0.061 0.939 46 H 0.060 0.940 47 H 0.080 0.920 48 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.338 -30.999 2.975 31.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.199 4.199 3 Si 0.788 3.212 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.142 4.142 11 C 0.014 3.986 12 N -0.334 5.334 13 C 0.199 3.801 14 C -0.357 4.357 15 C 0.142 3.858 16 N -0.200 5.200 17 C -0.055 4.055 18 C -0.140 4.140 19 C -0.127 4.127 20 C 0.306 3.694 21 N -0.399 5.399 22 O -0.475 6.475 23 C -0.134 4.134 24 C -0.060 4.060 25 N -0.327 5.327 26 C 0.065 3.935 27 N -0.341 5.341 28 H 0.072 0.928 29 H 0.015 0.985 30 H 0.016 0.984 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.247 0.753 36 H 0.155 0.845 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.132 0.868 41 H 0.142 0.858 42 H 0.250 0.750 43 H 0.237 0.763 44 H 0.098 0.902 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.099 0.901 48 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -4.649 -30.547 2.510 31.001 hybrid contribution 0.046 1.480 0.364 1.524 sum -4.603 -29.067 2.874 29.569 Atomic orbital electron populations 1.70084 1.07724 1.27848 1.51525 1.25963 0.95765 1.03329 0.94814 0.85526 0.78274 0.78249 0.79165 1.19240 1.21017 1.19166 1.21647 0.93625 0.92256 1.50654 0.92002 1.18910 0.94277 0.92444 0.95430 1.21585 0.98640 0.92261 1.01752 1.21419 0.91556 0.84347 1.01290 1.44668 1.10182 1.01085 1.77436 1.18518 0.88980 0.86296 0.86346 1.21555 0.95606 0.97941 1.20643 1.19804 0.89778 0.88935 0.87283 1.58801 1.05143 1.14251 1.41786 1.22036 0.96437 0.83698 1.03289 1.21668 0.92883 1.02334 0.97088 1.21428 0.90926 0.97605 1.02694 1.20845 0.91115 0.83123 0.74285 1.43736 1.13482 1.07333 1.75363 1.90759 1.60306 1.44737 1.51695 1.21377 0.93317 0.95208 1.03494 1.22268 0.93947 1.00070 0.89702 1.68403 1.02909 1.36203 1.25221 1.25109 0.90543 0.91777 0.86083 1.68017 1.39359 1.00576 1.26164 0.92770 0.98543 0.98362 0.91872 0.92035 0.92159 0.91818 0.75266 0.84501 0.89445 0.91967 0.91836 0.86824 0.85768 0.74960 0.76267 0.90181 0.92016 0.92203 0.90110 0.75662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.15 13.29 21.45 0.28 -55.87 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 3 Si 0.96 43.81 29.54 68.60 2.03 45.84 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.54 -30.18 9.11 25.60 0.23 -29.94 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 9 C 0.03 1.36 4.97 29.85 0.15 1.51 16 10 C -0.10 -3.95 5.27 30.59 0.16 -3.79 16 11 C 0.14 4.40 4.92 86.38 0.43 4.82 16 12 N -0.70 -20.19 5.71 -344.78 -1.97 -22.16 16 13 C 0.44 12.74 7.70 132.97 1.02 13.77 16 14 C -0.33 -9.06 8.49 22.71 0.19 -8.87 16 15 C 0.38 9.38 6.40 132.95 0.85 10.23 16 16 N -0.48 -9.94 4.68 -701.65 -3.28 -13.22 16 17 C 0.07 1.03 4.67 86.33 0.40 1.44 16 18 C -0.10 -1.00 5.26 30.65 0.16 -0.84 16 19 C -0.11 -1.24 2.59 -11.46 -0.03 -1.27 16 20 C 0.52 7.95 7.43 87.66 0.65 8.60 16 21 N -0.84 -5.15 8.78 -173.53 -1.52 -6.68 16 22 O -0.59 -15.73 16.81 -3.02 -0.05 -15.78 16 23 C -0.10 -1.70 4.68 30.65 0.14 -1.56 16 24 C 0.07 1.22 5.25 86.32 0.45 1.67 16 25 N -0.60 -13.80 8.84 -197.84 -1.75 -15.55 16 26 C 0.36 7.81 12.28 180.92 2.22 10.03 16 27 N -0.61 -16.54 10.47 -197.83 -2.07 -18.61 16 28 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 29 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 30 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 31 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.06 1.98 7.96 -2.39 -0.02 1.96 16 34 H 0.06 2.03 7.98 -2.39 -0.02 2.01 16 35 H 0.41 11.01 8.60 -92.71 -0.80 10.22 16 36 H 0.14 3.86 6.03 -2.91 -0.02 3.85 16 37 H 0.09 1.40 7.73 -2.38 -0.02 1.38 16 38 H 0.06 0.82 8.12 -2.39 -0.02 0.80 16 39 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.11 0.31 7.66 -2.39 -0.02 0.29 16 41 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.42 -0.40 8.32 -92.71 -0.77 -1.17 16 43 H 0.41 2.19 8.93 -92.71 -0.83 1.36 16 44 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.06 1.40 8.04 -2.39 -0.02 1.38 16 46 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 47 H 0.08 1.70 6.76 -2.39 -0.02 1.69 16 48 H 0.23 3.04 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -74.98 389.30 -2.23 -77.21 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -1.39 Total: 18.60 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: 7.50 Total: 6.22 kcal Atomic # 7 Polarization: -121.77 SS G_CDS: -10.31 Total: -132.08 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.05 Total: -15.78 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -74.98 -2.23 -77.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427413.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.215 kcal (2) G-P(sol) polarization free energy of solvation -74.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds