Wall clock time and date at job start Tue Mar 31 2020 18:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48505 * 109.46678 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47258 * 299.99866 * 3 2 1 6 6 H 1.48493 * 109.47346 * 60.00472 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.46840 * 180.02562 * 11 10 9 13 13 C 1.39361 * 119.99819 * 179.97438 * 12 11 10 14 14 C 1.39580 * 120.07474 * 359.72957 * 13 12 11 15 15 C 1.38367 * 117.96065 * 179.73554 * 14 13 12 16 16 C 1.39582 * 117.96313 * 0.52333 * 15 14 13 17 17 N 1.39359 * 120.07171 * 179.75079 * 16 15 14 18 18 C 1.46851 * 111.00242 * 304.18840 * 17 16 15 19 19 C 1.53034 * 109.52488 * 174.16178 * 18 17 16 20 20 C 1.53118 * 109.28011 * 59.18076 * 19 18 17 21 21 C 1.50697 * 109.52755 * 182.44061 * 20 19 18 22 22 N 1.34774 * 119.99682 * 299.68352 * 21 20 19 23 23 O 1.21282 * 120.00053 * 119.68189 * 21 20 19 24 24 C 1.53128 * 109.15882 * 302.34639 * 20 19 18 25 25 C 1.46854 * 110.99888 * 179.97438 * 17 16 15 26 26 N 1.32272 * 119.84995 * 359.73254 * 16 15 14 27 27 N 1.28344 * 122.18953 * 359.97438 * 26 16 15 28 28 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 30 30 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 31 31 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 32 32 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 33 33 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 34 34 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 35 35 H 0.97000 * 120.00420 * 0.02562 * 12 11 10 36 36 H 1.07990 * 121.01983 * 359.97438 * 14 13 12 37 37 H 1.08001 * 121.01263 * 180.28041 * 15 14 13 38 38 H 1.09003 * 109.46113 * 294.18284 * 18 17 16 39 39 H 1.08997 * 109.45736 * 54.14712 * 18 17 16 40 40 H 1.08996 * 109.50136 * 299.24079 * 19 18 17 41 41 H 1.09002 * 109.49960 * 179.12095 * 19 18 17 42 42 H 1.09005 * 109.52293 * 62.24492 * 20 19 18 43 43 H 0.96997 * 120.00328 * 0.02562 * 22 21 20 44 44 H 0.96998 * 119.99909 * 179.97438 * 22 21 20 45 45 H 1.08990 * 109.50191 * 297.71269 * 24 20 19 46 46 H 1.08998 * 109.49768 * 177.59127 * 24 20 19 47 47 H 1.08999 * 109.46049 * 305.85658 * 25 17 16 48 48 H 1.08995 * 109.45901 * 65.82193 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 7 2.4321 -6.1006 -0.0018 13 6 1.9675 -7.4145 -0.0008 14 6 0.5955 -7.6713 0.0064 15 6 0.1826 -8.9919 0.0015 16 6 1.1640 -9.9845 0.0008 17 7 0.7973 -11.3290 0.0011 18 6 -0.0835 -11.6341 1.1358 19 6 -0.5814 -13.0768 1.0233 20 6 0.6194 -14.0268 1.0155 21 6 0.1387 -15.4448 0.8447 22 7 -0.6931 -15.9886 1.7551 23 8 0.5003 -16.0966 -0.1120 24 6 1.5453 -13.6569 -0.1467 25 6 1.9816 -12.1974 -0.0004 26 7 2.4427 -9.6460 -0.0006 27 7 2.8257 -8.4211 -0.0017 28 1 -0.4849 0.8401 0.0004 29 1 0.6240 -2.5566 -0.8903 30 1 0.6246 -2.5571 0.8897 31 1 2.8725 -3.6048 0.8878 32 1 2.8712 -3.6040 -0.8921 33 1 0.8543 -5.0449 0.8894 34 1 0.8525 -5.0447 -0.8905 35 1 3.3858 -5.9235 -0.0021 36 1 -0.1217 -6.8640 0.0118 37 1 -0.8669 -9.2468 0.0021 38 1 0.4690 -11.5120 2.0675 39 1 -0.9354 -10.9542 1.1272 40 1 -1.1457 -13.1959 0.0985 41 1 -1.2226 -13.3077 1.8740 42 1 1.1619 -13.9359 1.9566 43 1 -0.9826 -15.4672 2.5201 44 1 -1.0028 -16.9012 1.6450 45 1 1.0145 -13.7852 -1.0898 46 1 2.4235 -14.3024 -0.1318 47 1 2.6295 -11.9266 -0.8341 48 1 2.5244 -12.0727 0.9365 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168427625.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:06 Heat of formation + Delta-G solvation = 12.499724 kcal Electronic energy + Delta-G solvation = -27250.952405 eV Core-core repulsion = 23340.478024 eV Total energy + Delta-G solvation = -3910.474381 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.30369 -40.35624 -38.64696 -36.67036 -34.62250 -33.99866 -33.68235 -32.62831 -31.53143 -31.26505 -29.36559 -26.78325 -25.75066 -24.84898 -23.62853 -22.90739 -22.22130 -21.29500 -20.51288 -20.04732 -18.23297 -17.81118 -17.47903 -17.08071 -16.95049 -16.35603 -15.76047 -15.36693 -15.13348 -14.92452 -14.67173 -14.54474 -14.32106 -14.13903 -14.02524 -13.79915 -13.53574 -13.33150 -12.75687 -12.36882 -12.29830 -12.01293 -11.88904 -11.65167 -11.47618 -11.19499 -11.04928 -10.97650 -10.82906 -10.77682 -10.60099 -10.36127 -10.22645 -10.16074 -9.90921 -9.64078 -9.53197 -9.19958 -9.03006 -8.44410 -7.59036 -6.09406 -4.12136 0.86733 1.21847 2.18916 3.03869 3.04108 3.25985 3.33156 3.34413 3.38381 3.70665 4.13845 4.18300 4.32922 4.39120 4.41614 4.61558 4.66618 4.74117 4.86483 4.89633 4.95990 5.04449 5.11463 5.21136 5.27182 5.37073 5.38421 5.45704 5.49654 5.55559 5.63497 5.71499 5.78312 5.92636 5.97755 5.98607 6.29182 6.45583 6.48973 6.57389 6.82574 6.83418 6.87273 7.14595 7.53582 7.64820 7.68834 7.80139 7.88951 8.30457 8.93702 8.94529 9.52824 11.01904 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.044572 B = 0.001532 C = 0.001497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.051292 B =18267.701996 C =18699.542496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.025 3.975 10 C -0.121 4.121 11 C 0.121 3.879 12 N -0.711 5.711 13 C 0.332 3.668 14 C -0.157 4.157 15 C -0.088 4.088 16 C 0.187 3.813 17 N -0.465 5.465 18 C 0.058 3.942 19 C -0.106 4.106 20 C -0.113 4.113 21 C 0.523 3.477 22 N -0.858 5.858 23 O -0.540 6.540 24 C -0.099 4.099 25 C 0.064 3.936 26 N -0.240 5.240 27 N -0.298 5.298 28 H 0.261 0.739 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.408 0.592 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.047 0.953 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.098 0.902 43 H 0.401 0.599 44 H 0.401 0.599 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.093 0.907 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.195 -29.710 5.639 30.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.159 4.159 11 C -0.002 4.002 12 N -0.344 5.344 13 C 0.088 3.912 14 C -0.191 4.191 15 C -0.119 4.119 16 C -0.056 4.056 17 N -0.186 5.186 18 C -0.069 4.069 19 C -0.145 4.145 20 C -0.134 4.134 21 C 0.308 3.692 22 N -0.421 5.421 23 O -0.416 6.416 24 C -0.137 4.137 25 C -0.063 4.063 26 N -0.085 5.085 27 N -0.149 5.149 28 H 0.070 0.930 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.244 0.756 36 H 0.168 0.832 37 H 0.164 0.836 38 H 0.066 0.934 39 H 0.106 0.894 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.116 0.884 43 H 0.229 0.771 44 H 0.231 0.769 45 H 0.100 0.900 46 H 0.098 0.902 47 H 0.111 0.889 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.842 -30.304 4.529 30.772 hybrid contribution -0.746 1.571 1.010 2.011 sum -3.588 -28.733 5.539 29.481 Atomic orbital electron populations 1.69966 1.06062 1.26646 1.50675 1.25017 0.94868 0.99348 0.95156 0.86519 0.80126 0.83644 0.77634 1.19701 1.20959 1.20971 1.21239 0.93128 0.90876 1.50870 0.92522 1.19036 0.93798 0.90913 0.97562 1.21873 0.99879 0.92754 1.01380 1.21772 0.92021 0.85434 1.00994 1.44820 1.10208 1.00565 1.78787 1.20119 0.90531 0.88215 0.92368 1.21859 0.95370 0.97824 1.04067 1.21717 1.00669 0.91474 0.98011 1.21075 0.91321 0.90848 1.02358 1.59248 1.18448 0.99833 1.41060 1.22242 0.96733 0.96957 0.90939 1.21605 0.96305 0.92940 1.03615 1.21466 0.98455 0.91389 1.02109 1.20643 0.77722 0.89023 0.81814 1.43922 1.51293 1.18733 1.28157 1.90762 1.56735 1.63435 1.30637 1.21495 0.99349 0.94906 0.97988 1.22041 0.90416 0.90803 1.02998 1.72815 1.14537 1.10141 1.10980 1.72750 1.29597 0.93587 1.18970 0.92965 0.96264 0.96285 0.92453 0.92409 0.92082 0.92014 0.75646 0.83200 0.83557 0.93437 0.89434 0.89958 0.90463 0.88388 0.77056 0.76887 0.90042 0.90233 0.88898 0.93186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.95 13.29 55.43 0.74 -25.21 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.19 9.11 -34.44 -0.31 -14.50 16 8 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.23 5.27 -26.73 -0.14 -2.37 16 11 C 0.12 1.82 4.92 -4.04 -0.02 1.80 16 12 N -0.71 -10.06 5.74 -60.22 -0.35 -10.41 16 13 C 0.33 4.75 7.75 -154.60 -1.20 3.55 16 14 C -0.16 -1.90 9.41 -39.03 -0.37 -2.26 16 15 C -0.09 -0.93 9.28 -39.03 -0.36 -1.29 16 16 C 0.19 2.22 6.48 -154.61 -1.00 1.22 16 17 N -0.47 -4.39 4.69 -173.00 -0.81 -5.20 16 18 C 0.06 0.37 5.26 -3.83 -0.02 0.35 16 19 C -0.11 -0.49 5.26 -26.65 -0.14 -0.63 16 20 C -0.11 -0.65 2.59 -91.65 -0.24 -0.89 16 21 C 0.52 3.75 7.43 -10.99 -0.08 3.67 16 22 N -0.86 -2.85 8.78 31.22 0.27 -2.58 16 23 O -0.54 -6.39 16.81 5.56 0.09 -6.30 16 24 C -0.10 -0.79 4.68 -26.65 -0.12 -0.91 16 25 C 0.06 0.59 4.67 -3.83 -0.02 0.58 16 26 N -0.24 -3.46 9.87 31.28 0.31 -3.15 16 27 N -0.30 -4.64 11.52 31.28 0.36 -4.28 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.06 0.89 7.95 -51.93 -0.41 0.48 16 34 H 0.06 0.91 7.98 -51.93 -0.41 0.50 16 35 H 0.41 5.58 8.60 -40.82 -0.35 5.23 16 36 H 0.15 1.58 6.84 -52.49 -0.36 1.22 16 37 H 0.15 1.10 7.22 -52.49 -0.38 0.72 16 38 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.09 0.47 6.73 -51.93 -0.35 0.12 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.15 7.66 -51.93 -0.40 -0.24 16 42 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.40 0.18 8.32 -40.82 -0.34 -0.16 16 44 H 0.40 1.11 8.93 -40.82 -0.36 0.74 16 45 H 0.08 0.77 8.04 -51.93 -0.42 0.35 16 46 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.09 1.00 7.72 -51.93 -0.40 0.60 16 48 H 0.05 0.47 8.12 -51.93 -0.42 0.05 16 LS Contribution 389.40 15.07 5.87 5.87 Total: -1.00 -33.97 389.40 -10.33 -44.31 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -7.53 Total: 0.64 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -4.26 Total: -9.74 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: 0.52 Total: -50.84 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: 0.09 Total: -6.30 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.97 -10.33 -44.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427625.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.805 kcal (2) G-P(sol) polarization free energy of solvation -33.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds