Wall clock time and date at job start Tue Mar 31 2020 18:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48505 * 109.46678 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47258 * 299.99866 * 3 2 1 6 6 H 1.48493 * 109.47346 * 60.00472 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.46840 * 180.02562 * 11 10 9 13 13 C 1.39361 * 119.99819 * 179.97438 * 12 11 10 14 14 C 1.39580 * 120.07474 * 359.72957 * 13 12 11 15 15 C 1.38367 * 117.96065 * 179.73554 * 14 13 12 16 16 C 1.39582 * 117.96313 * 0.52333 * 15 14 13 17 17 N 1.39359 * 120.07171 * 179.75079 * 16 15 14 18 18 C 1.46851 * 111.00242 * 304.18840 * 17 16 15 19 19 C 1.53034 * 109.52488 * 174.16178 * 18 17 16 20 20 C 1.53118 * 109.28011 * 59.18076 * 19 18 17 21 21 C 1.50697 * 109.52755 * 182.44061 * 20 19 18 22 22 N 1.34774 * 119.99682 * 299.68352 * 21 20 19 23 23 O 1.21282 * 120.00053 * 119.68189 * 21 20 19 24 24 C 1.53128 * 109.15882 * 302.34639 * 20 19 18 25 25 C 1.46854 * 110.99888 * 179.97438 * 17 16 15 26 26 N 1.32272 * 119.84995 * 359.73254 * 16 15 14 27 27 N 1.28344 * 122.18953 * 359.97438 * 26 16 15 28 28 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 30 30 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 31 31 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 32 32 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 33 33 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 34 34 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 35 35 H 0.97000 * 120.00420 * 0.02562 * 12 11 10 36 36 H 1.07990 * 121.01983 * 359.97438 * 14 13 12 37 37 H 1.08001 * 121.01263 * 180.28041 * 15 14 13 38 38 H 1.09003 * 109.46113 * 294.18284 * 18 17 16 39 39 H 1.08997 * 109.45736 * 54.14712 * 18 17 16 40 40 H 1.08996 * 109.50136 * 299.24079 * 19 18 17 41 41 H 1.09002 * 109.49960 * 179.12095 * 19 18 17 42 42 H 1.09005 * 109.52293 * 62.24492 * 20 19 18 43 43 H 0.96997 * 120.00328 * 0.02562 * 22 21 20 44 44 H 0.96998 * 119.99909 * 179.97438 * 22 21 20 45 45 H 1.08990 * 109.50191 * 297.71269 * 24 20 19 46 46 H 1.08998 * 109.49768 * 177.59127 * 24 20 19 47 47 H 1.08999 * 109.46049 * 305.85658 * 25 17 16 48 48 H 1.08995 * 109.45901 * 65.82193 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 7 2.4321 -6.1006 -0.0018 13 6 1.9675 -7.4145 -0.0008 14 6 0.5955 -7.6713 0.0064 15 6 0.1826 -8.9919 0.0015 16 6 1.1640 -9.9845 0.0008 17 7 0.7973 -11.3290 0.0011 18 6 -0.0835 -11.6341 1.1358 19 6 -0.5814 -13.0768 1.0233 20 6 0.6194 -14.0268 1.0155 21 6 0.1387 -15.4448 0.8447 22 7 -0.6931 -15.9886 1.7551 23 8 0.5003 -16.0966 -0.1120 24 6 1.5453 -13.6569 -0.1467 25 6 1.9816 -12.1974 -0.0004 26 7 2.4427 -9.6460 -0.0006 27 7 2.8257 -8.4211 -0.0017 28 1 -0.4849 0.8401 0.0004 29 1 0.6240 -2.5566 -0.8903 30 1 0.6246 -2.5571 0.8897 31 1 2.8725 -3.6048 0.8878 32 1 2.8712 -3.6040 -0.8921 33 1 0.8543 -5.0449 0.8894 34 1 0.8525 -5.0447 -0.8905 35 1 3.3858 -5.9235 -0.0021 36 1 -0.1217 -6.8640 0.0118 37 1 -0.8669 -9.2468 0.0021 38 1 0.4690 -11.5120 2.0675 39 1 -0.9354 -10.9542 1.1272 40 1 -1.1457 -13.1959 0.0985 41 1 -1.2226 -13.3077 1.8740 42 1 1.1619 -13.9359 1.9566 43 1 -0.9826 -15.4672 2.5201 44 1 -1.0028 -16.9012 1.6450 45 1 1.0145 -13.7852 -1.0898 46 1 2.4235 -14.3024 -0.1318 47 1 2.6295 -11.9266 -0.8341 48 1 2.5244 -12.0727 0.9365 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168427625.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:05 Heat of formation + Delta-G solvation = -12.253006 kcal Electronic energy + Delta-G solvation = -27252.025764 eV Core-core repulsion = 23340.478024 eV Total energy + Delta-G solvation = -3911.547740 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.18681 -41.00355 -39.39084 -37.82425 -35.72452 -35.12781 -34.47220 -33.82307 -32.89158 -31.87360 -30.54354 -28.20095 -26.72995 -25.67546 -24.96820 -23.72164 -23.26897 -22.15498 -21.83761 -20.61030 -19.05340 -18.60976 -18.47457 -18.14789 -17.88665 -17.53345 -16.66908 -16.50325 -16.22804 -15.94450 -15.74470 -15.52070 -15.39323 -14.99598 -14.80815 -14.46962 -14.29267 -14.20399 -14.06065 -13.79232 -13.69755 -13.26644 -12.84861 -12.65952 -12.54455 -12.49272 -12.30964 -12.19586 -12.03271 -11.75290 -11.55612 -11.49580 -11.46323 -11.23583 -11.17503 -10.84939 -10.60744 -10.54461 -10.53010 -9.90730 -8.59603 -8.20078 -6.29720 -0.05980 0.27810 1.40598 1.42151 1.54083 1.65847 2.02562 2.41749 2.48262 2.61483 2.75767 3.14341 3.48420 3.61492 3.68823 3.75047 3.83886 3.92714 4.05387 4.12679 4.21894 4.23792 4.30294 4.36015 4.43919 4.57159 4.58372 4.63077 4.70732 4.75464 4.85952 4.94034 4.96819 4.99041 5.02420 5.16519 5.17176 5.19468 5.32959 5.52337 5.74045 5.82393 5.85731 5.93704 5.97405 6.09333 6.26407 6.50447 6.60152 6.87115 7.39084 7.39546 7.95180 8.91587 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.044572 B = 0.001532 C = 0.001497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.051292 B =18267.701996 C =18699.542496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.960 3.040 4 H -0.264 1.264 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.544 4.544 8 H 0.058 0.942 9 C 0.027 3.973 10 C -0.106 4.106 11 C 0.138 3.862 12 N -0.713 5.713 13 C 0.317 3.683 14 C -0.160 4.160 15 C -0.078 4.078 16 C 0.190 3.810 17 N -0.468 5.468 18 C 0.053 3.947 19 C -0.098 4.098 20 C -0.108 4.108 21 C 0.522 3.478 22 N -0.836 5.836 23 O -0.595 6.595 24 C -0.093 4.093 25 C 0.071 3.929 26 N -0.272 5.272 27 N -0.330 5.330 28 H 0.263 0.737 29 H 0.000 1.000 30 H 0.001 0.999 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.407 0.593 36 H 0.166 0.834 37 H 0.184 0.816 38 H 0.052 0.948 39 H 0.106 0.894 40 H 0.073 0.927 41 H 0.115 0.885 42 H 0.119 0.881 43 H 0.418 0.582 44 H 0.406 0.594 45 H 0.062 0.938 46 H 0.072 0.928 47 H 0.069 0.931 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.470 -30.404 7.035 31.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.785 3.215 4 H -0.188 1.188 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.582 4.582 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.145 4.145 11 C 0.014 3.986 12 N -0.347 5.347 13 C 0.072 3.928 14 C -0.193 4.193 15 C -0.108 4.108 16 C -0.054 4.054 17 N -0.189 5.189 18 C -0.072 4.072 19 C -0.136 4.136 20 C -0.129 4.129 21 C 0.308 3.692 22 N -0.400 5.400 23 O -0.475 6.475 24 C -0.131 4.131 25 C -0.056 4.056 26 N -0.116 5.116 27 N -0.179 5.179 28 H 0.072 0.928 29 H 0.018 0.982 30 H 0.020 0.980 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.243 0.757 36 H 0.184 0.816 37 H 0.201 0.799 38 H 0.070 0.930 39 H 0.124 0.876 40 H 0.092 0.908 41 H 0.133 0.867 42 H 0.137 0.863 43 H 0.250 0.750 44 H 0.237 0.763 45 H 0.081 0.919 46 H 0.091 0.909 47 H 0.088 0.912 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.132 -31.033 5.977 31.872 hybrid contribution -0.423 1.655 0.590 1.807 sum -4.554 -29.378 6.567 30.446 Atomic orbital electron populations 1.70077 1.07563 1.27649 1.51694 1.25888 0.95737 1.03066 0.94835 0.85471 0.79099 0.79207 0.77715 1.18833 1.20541 1.20446 1.21719 0.93570 0.92464 1.50426 0.92336 1.18922 0.94272 0.92216 0.95670 1.21586 0.98714 0.92657 1.01495 1.21448 0.91539 0.84046 1.01569 1.44604 1.09949 1.00472 1.79704 1.20265 0.91537 0.87786 0.93177 1.22103 0.94621 0.99048 1.03532 1.22089 1.02134 0.90409 0.96190 1.21458 0.90978 0.92267 1.00657 1.59325 1.18460 0.98561 1.42520 1.22449 0.96600 0.98455 0.89733 1.21618 0.95863 0.91285 1.04869 1.21436 0.98736 0.90977 1.01741 1.20833 0.77685 0.89234 0.81486 1.43753 1.49525 1.19060 1.27625 1.90748 1.59005 1.64731 1.33065 1.21367 0.99539 0.93833 0.98390 1.21908 0.90314 0.91458 1.01905 1.72745 1.16183 1.09764 1.12883 1.72646 1.30798 0.94216 1.20288 0.92789 0.98187 0.98047 0.92239 0.92380 0.91373 0.91621 0.75680 0.81622 0.79890 0.92965 0.87621 0.90834 0.86702 0.86346 0.74984 0.76274 0.91887 0.90903 0.91249 0.93343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.41 13.29 21.45 0.28 -54.12 16 2 C 0.00 0.16 5.46 84.65 0.46 0.62 16 3 Si 0.96 43.11 29.54 68.60 2.03 45.14 16 4 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 7 C -0.54 -29.64 9.11 25.60 0.23 -29.41 16 8 H 0.06 3.09 7.74 -2.91 -0.02 3.06 16 9 C 0.03 1.31 4.97 29.85 0.15 1.45 16 10 C -0.11 -3.90 5.27 30.59 0.16 -3.74 16 11 C 0.14 4.03 4.92 86.38 0.43 4.46 16 12 N -0.71 -19.87 5.74 -344.45 -1.98 -21.85 16 13 C 0.32 8.91 7.75 133.08 1.03 9.94 16 14 C -0.16 -3.57 9.41 22.62 0.21 -3.35 16 15 C -0.08 -1.45 9.28 22.63 0.21 -1.24 16 16 C 0.19 4.29 6.48 133.09 0.86 5.16 16 17 N -0.47 -8.14 4.69 -701.26 -3.29 -11.43 16 18 C 0.05 0.51 5.26 86.32 0.45 0.97 16 19 C -0.10 -0.58 5.26 30.65 0.16 -0.42 16 20 C -0.11 -1.03 2.59 -11.46 -0.03 -1.06 16 21 C 0.52 6.70 7.43 87.66 0.65 7.35 16 22 N -0.84 -3.36 8.78 -173.54 -1.52 -4.89 16 23 O -0.60 -14.11 16.81 -3.04 -0.05 -14.16 16 24 C -0.09 -1.48 4.68 30.65 0.14 -1.33 16 25 C 0.07 1.32 4.67 86.32 0.40 1.72 16 26 N -0.27 -7.88 9.87 -54.95 -0.54 -8.43 16 27 N -0.33 -10.37 11.52 -54.95 -0.63 -11.00 16 28 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 29 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 30 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 31 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.07 1.90 7.95 -2.39 -0.02 1.88 16 34 H 0.07 1.87 7.98 -2.39 -0.02 1.85 16 35 H 0.41 11.16 8.60 -92.71 -0.80 10.36 16 36 H 0.17 3.10 6.84 -2.92 -0.02 3.08 16 37 H 0.18 1.97 7.22 -2.91 -0.02 1.95 16 38 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.11 0.67 6.73 -2.39 -0.02 0.65 16 40 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.11 -0.12 7.66 -2.39 -0.02 -0.14 16 42 H 0.12 0.69 8.14 -2.38 -0.02 0.67 16 43 H 0.42 -1.21 8.32 -92.71 -0.77 -1.98 16 44 H 0.41 1.34 8.93 -92.71 -0.83 0.51 16 45 H 0.06 1.24 8.04 -2.39 -0.02 1.22 16 46 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.07 1.59 7.72 -2.39 -0.02 1.57 16 48 H 0.05 0.91 8.12 -2.39 -0.02 0.89 16 Total: -1.00 -76.05 389.40 -1.57 -77.63 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -1.39 Total: 12.01 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: 5.53 Total: -8.90 kcal Atomic # 7 Polarization: -104.04 SS G_CDS: -7.68 Total: -111.72 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.05 Total: -14.16 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -76.05 -1.57 -77.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427625.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.374 kcal (2) G-P(sol) polarization free energy of solvation -76.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds