Wall clock time and date at job start Tue Mar 31 2020 17:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47157 * 2 1 4 4 C 1.53006 * 109.47007 * 240.00672 * 2 1 3 5 5 C 1.52994 * 109.47130 * 175.00126 * 4 2 1 6 6 C 1.50695 * 109.47265 * 179.97438 * 5 4 2 7 7 H 1.08002 * 120.00102 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00196 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00284 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 120.00347 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46608 * 359.97438 * 10 8 6 12 12 H 1.48490 * 109.47289 * 119.99588 * 10 8 6 13 13 H 1.48496 * 109.47192 * 239.99991 * 10 8 6 14 14 N 1.46894 * 109.47299 * 120.00399 * 2 1 3 15 15 C 1.46900 * 110.99788 * 274.99948 * 14 2 1 16 16 C 1.53010 * 109.47011 * 179.97438 * 15 14 2 17 17 N 1.46900 * 109.47011 * 179.97438 * 16 15 14 18 18 C 1.46903 * 110.99653 * 170.00058 * 17 16 15 19 19 C 1.53241 * 109.33631 * 187.25275 * 18 17 16 20 20 N 1.47075 * 108.52094 * 306.17105 * 19 18 17 21 21 S 1.65599 * 120.87816 * 231.18527 * 20 19 18 22 22 C 1.81397 * 104.44825 * 90.00229 * 21 20 19 23 23 O 1.42105 * 104.27797 * 206.07341 * 21 20 19 24 24 O 1.42101 * 104.27901 * 333.93049 * 21 20 19 25 25 C 1.47077 * 118.23886 * 51.45978 * 20 19 18 26 26 C 1.46893 * 111.00047 * 294.29927 * 17 16 15 27 27 H 1.08999 * 109.46930 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47126 * 299.99563 * 1 2 3 29 29 H 1.08997 * 109.47144 * 59.99598 * 1 2 3 30 30 H 1.09002 * 109.46475 * 294.99576 * 4 2 1 31 31 H 1.08999 * 109.47433 * 54.99416 * 4 2 1 32 32 H 1.09004 * 109.47219 * 299.99869 * 5 4 2 33 33 H 1.08999 * 109.47543 * 59.99356 * 5 4 2 34 34 H 0.97000 * 120.00512 * 180.02562 * 9 8 6 35 35 H 1.00898 * 111.00117 * 151.04783 * 14 2 1 36 36 H 1.08993 * 109.47166 * 60.00560 * 15 14 2 37 37 H 1.08994 * 109.47264 * 299.99859 * 15 14 2 38 38 H 1.08995 * 109.46964 * 59.99840 * 16 15 14 39 39 H 1.09007 * 109.46742 * 300.00102 * 16 15 14 40 40 H 1.08998 * 109.49149 * 67.29677 * 18 17 16 41 41 H 1.08998 * 109.49119 * 307.20997 * 18 17 16 42 42 H 1.09000 * 109.62511 * 186.45793 * 19 18 17 43 43 H 1.09009 * 109.62732 * 65.88429 * 19 18 17 44 44 H 1.09003 * 109.47352 * 180.02562 * 22 21 20 45 45 H 1.09004 * 109.47032 * 299.99803 * 22 21 20 46 46 H 1.09000 * 109.47124 * 60.00075 * 22 21 20 47 47 H 1.08999 * 109.62966 * 68.25482 * 25 20 19 48 48 H 1.09003 * 109.62478 * 188.82972 * 25 20 19 49 49 H 1.08998 * 109.49955 * 292.71056 * 26 17 16 50 50 H 1.09008 * 109.49312 * 52.79138 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6132 -1.3138 6 6 4.0671 -1.3240 -2.5440 7 1 3.3688 -1.8050 -3.2128 8 6 5.4184 -1.3611 -2.8152 9 7 6.2690 -0.7758 -2.0006 10 14 6.0413 -2.2428 -4.3398 11 1 4.8913 -2.8150 -5.0851 12 1 6.7645 -1.2795 -5.2080 13 1 6.9630 -3.3355 -3.9378 14 7 2.0197 -0.6925 1.1993 15 6 2.0825 0.2225 2.3468 16 6 2.5951 -0.5334 3.5744 17 7 2.6585 0.3818 4.7217 18 6 2.9169 -0.3528 5.9674 19 6 2.7959 0.6063 7.1565 20 7 3.6789 1.7583 6.9192 21 16 4.7636 2.2490 8.0703 22 6 6.2723 1.3128 7.6989 23 8 4.9563 3.6314 7.8036 24 8 4.1947 1.8119 9.2969 25 6 3.5688 2.4667 5.6350 26 6 3.6634 1.4308 4.5035 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.7516 -1.7714 -1.2057 31 1 1.6053 -0.2616 -2.1371 32 1 3.8532 0.4371 -1.3574 33 1 3.9995 -1.0727 -0.4261 34 1 7.2197 -0.8017 -2.1916 35 1 2.9173 -1.1205 1.0286 36 1 1.0872 0.6161 2.5525 37 1 2.7588 1.0461 2.1182 38 1 3.5904 -0.9274 3.3690 39 1 1.9184 -1.3568 3.8028 40 1 3.9222 -0.7731 5.9399 41 1 2.1887 -1.1569 6.0731 42 1 3.0979 0.0956 8.0709 43 1 1.7648 0.9479 7.2479 44 1 7.0492 1.5760 8.4167 45 1 6.0630 0.2451 7.7659 46 1 6.6110 1.5542 6.6914 47 1 2.6107 2.9837 5.5830 48 1 4.3820 3.1866 5.5431 49 1 4.6584 0.9857 4.4964 50 1 3.4767 1.9202 3.5476 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172490090.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:52 Heat of formation + Delta-G solvation = -69.451633 kcal Electronic energy + Delta-G solvation = -27308.712929 eV Core-core repulsion = 23497.836070 eV Total energy + Delta-G solvation = -3810.876859 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.36379 -37.51906 -37.30330 -36.31067 -35.16742 -33.24537 -31.77090 -31.36418 -29.87423 -29.38948 -28.01644 -25.55644 -24.76852 -24.14261 -21.77019 -21.27918 -20.82720 -19.54701 -19.11451 -18.08705 -16.71763 -16.57192 -16.43351 -15.80894 -15.70279 -15.08710 -14.97404 -14.94755 -14.53374 -14.46227 -14.33873 -13.75254 -13.59164 -13.40565 -13.10261 -12.87829 -12.66018 -12.54751 -12.45768 -12.23065 -12.16740 -12.08413 -11.70823 -11.62151 -11.58905 -11.46766 -11.35276 -11.08634 -11.02433 -10.94323 -10.87106 -10.49178 -10.20523 -9.80125 -9.46734 -9.31599 -9.06424 -8.51635 -8.41139 -8.00698 -6.06242 -4.07957 -0.13584 2.20905 3.26903 3.34762 3.39127 3.48516 3.55661 3.72795 4.15451 4.41458 4.42013 4.49109 4.60532 4.75228 4.87019 4.88756 4.96089 5.06301 5.22075 5.25675 5.27221 5.30630 5.36659 5.46188 5.51058 5.60211 5.66856 5.70805 5.75571 5.77517 5.91389 6.02364 6.06299 6.15815 6.19188 6.35014 6.49503 6.51712 6.83710 6.85609 6.88774 7.04482 7.47327 7.57044 7.74865 7.85842 7.94132 8.37489 8.99045 9.56584 11.04999 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014860 B = 0.002260 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.811975 B =12384.657842 C =13621.141109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.085 3.915 3 H 0.037 0.963 4 C -0.115 4.115 5 C 0.021 3.979 6 C -0.518 4.518 7 H 0.056 0.944 8 C 0.056 3.944 9 N -0.897 5.897 10 Si 0.891 3.109 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.284 1.284 14 N -0.688 5.688 15 C 0.064 3.936 16 C 0.058 3.942 17 N -0.533 5.533 18 C 0.040 3.960 19 C 0.128 3.872 20 N -1.002 6.002 21 S 2.611 3.389 22 C -0.674 4.674 23 O -0.954 6.954 24 O -0.956 6.956 25 C 0.128 3.872 26 C 0.033 3.967 27 H 0.057 0.943 28 H 0.044 0.956 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.012 0.988 33 H 0.014 0.986 34 H 0.259 0.741 35 H 0.350 0.650 36 H 0.074 0.926 37 H 0.027 0.973 38 H 0.035 0.965 39 H 0.084 0.916 40 H 0.037 0.963 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.082 0.918 44 H 0.126 0.874 45 H 0.127 0.873 46 H 0.128 0.872 47 H 0.083 0.917 48 H 0.093 0.907 49 H 0.039 0.961 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.728 3.803 20.694 21.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.024 4.024 3 H 0.055 0.945 4 C -0.153 4.153 5 C -0.016 4.016 6 C -0.556 4.556 7 H 0.074 0.926 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.719 3.281 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.210 1.210 14 N -0.323 5.323 15 C -0.066 4.066 16 C -0.070 4.070 17 N -0.259 5.259 18 C -0.089 4.089 19 C 0.002 3.998 20 N -0.840 5.840 21 S 2.704 3.296 22 C -0.824 4.824 23 O -0.945 6.945 24 O -0.947 6.947 25 C 0.003 3.997 26 C -0.096 4.096 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.030 0.970 33 H 0.032 0.968 34 H 0.069 0.931 35 H 0.171 0.829 36 H 0.093 0.907 37 H 0.045 0.955 38 H 0.054 0.946 39 H 0.102 0.898 40 H 0.055 0.945 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.100 0.900 44 H 0.145 0.855 45 H 0.145 0.855 46 H 0.147 0.853 47 H 0.101 0.899 48 H 0.111 0.889 49 H 0.058 0.942 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.764 4.439 21.616 22.807 hybrid contribution 2.568 -0.872 -1.619 3.159 sum -3.196 3.568 19.997 20.563 Atomic orbital electron populations 1.21787 0.95701 1.01688 1.00222 1.21570 0.94530 0.95987 0.90348 0.94512 1.21839 0.99608 0.99484 0.94391 1.19119 0.88834 0.96792 0.96855 1.21283 0.91946 1.34036 1.08316 0.92591 1.25026 0.97100 0.95626 0.96730 1.69964 1.02302 1.44282 1.37088 0.86544 0.78865 0.79467 0.83188 1.19702 1.21043 1.21038 1.60522 1.34522 1.32702 1.04550 1.21909 1.00735 0.93900 0.90064 1.22084 1.00205 0.94929 0.89772 1.61786 1.47958 1.13735 1.02384 1.22499 1.00488 0.96021 0.89930 1.21532 0.95472 0.85489 0.97258 1.57809 1.51579 1.43043 1.31562 1.04902 0.75964 0.75087 0.73652 1.30602 1.23074 1.16289 1.12443 1.93615 1.86353 1.29652 1.84864 1.93605 1.75300 1.83426 1.42350 1.21646 1.03890 0.93498 0.80709 1.22702 0.93723 0.93799 0.99426 0.92417 0.93692 0.93072 0.92457 0.92701 0.97012 0.96787 0.93119 0.82871 0.90711 0.95478 0.94647 0.89780 0.94454 0.89279 0.89007 0.89957 0.85497 0.85477 0.85317 0.89899 0.88886 0.94229 0.88840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.42 37.16 0.35 -1.59 16 2 C 0.09 1.42 2.65 -67.71 -0.18 1.24 16 3 H 0.04 0.64 7.80 -51.93 -0.40 0.24 16 4 C -0.12 -2.31 4.74 -26.73 -0.13 -2.43 16 5 C 0.02 0.52 4.80 -27.89 -0.13 0.39 16 6 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16 7 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.26 13.29 55.43 0.74 -25.53 16 10 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 11 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 N -0.69 -10.82 6.31 -106.73 -0.67 -11.49 16 15 C 0.06 0.84 5.41 -3.82 -0.02 0.82 16 16 C 0.06 0.65 5.22 -3.82 -0.02 0.63 16 17 N -0.53 -5.17 4.63 -234.02 -1.08 -6.25 16 18 C 0.04 0.31 5.62 -3.70 -0.02 0.29 16 19 C 0.13 0.93 6.46 -3.60 -0.02 0.91 16 20 N -1.00 -7.92 3.25 -112.97 -0.37 -8.29 16 21 S 2.61 21.14 6.06 -107.50 -0.65 20.49 16 22 C -0.67 -3.44 10.99 101.05 1.11 -2.33 16 23 O -0.95 -10.88 16.78 -57.54 -0.97 -11.84 16 24 O -0.96 -10.45 16.79 -57.54 -0.97 -11.42 16 25 C 0.13 1.05 6.50 -3.37 -0.02 1.03 16 26 C 0.03 0.31 5.48 -3.47 -0.02 0.29 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.04 0.59 7.45 -51.93 -0.39 0.20 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.01 0.36 6.43 -51.93 -0.33 0.02 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.35 6.15 6.47 -39.29 -0.25 5.90 16 36 H 0.07 0.98 7.44 -51.93 -0.39 0.59 16 37 H 0.03 0.38 6.31 -51.93 -0.33 0.05 16 38 H 0.04 0.43 8.12 -51.93 -0.42 0.01 16 39 H 0.08 0.94 7.97 -51.93 -0.41 0.52 16 40 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.09 0.61 7.99 -51.93 -0.41 0.20 16 42 H 0.09 0.55 7.19 -51.93 -0.37 0.17 16 43 H 0.08 0.62 8.14 -51.92 -0.42 0.19 16 44 H 0.13 0.50 8.14 -51.92 -0.42 0.07 16 45 H 0.13 0.51 8.14 -51.92 -0.42 0.09 16 46 H 0.13 0.59 8.14 -51.92 -0.42 0.17 16 47 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 48 H 0.09 0.69 7.18 -51.93 -0.37 0.32 16 49 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.09 0.92 6.16 -51.92 -0.32 0.60 16 LS Contribution 400.10 15.07 6.03 6.03 Total: -1.00 -33.78 400.10 -11.50 -45.28 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -9.03 Total: 0.62 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: 0.48 Total: -13.93 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: -1.39 Total: -51.56 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -1.93 Total: -23.26 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 21.14 SS G_CDS: -0.65 Total: 20.49 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.78 -11.50 -45.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490090.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.169 kcal (2) G-P(sol) polarization free energy of solvation -33.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds