Wall clock time and date at job start Tue Mar 31 2020 17:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47157 * 2 1 4 4 C 1.53006 * 109.47007 * 240.00672 * 2 1 3 5 5 C 1.52994 * 109.47130 * 175.00126 * 4 2 1 6 6 C 1.50695 * 109.47265 * 179.97438 * 5 4 2 7 7 H 1.08002 * 120.00102 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00196 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00284 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 120.00347 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46608 * 359.97438 * 10 8 6 12 12 H 1.48490 * 109.47289 * 119.99588 * 10 8 6 13 13 H 1.48496 * 109.47192 * 239.99991 * 10 8 6 14 14 N 1.46894 * 109.47299 * 120.00399 * 2 1 3 15 15 C 1.46900 * 110.99788 * 274.99948 * 14 2 1 16 16 C 1.53010 * 109.47011 * 179.97438 * 15 14 2 17 17 N 1.46900 * 109.47011 * 179.97438 * 16 15 14 18 18 C 1.46903 * 110.99653 * 170.00058 * 17 16 15 19 19 C 1.53241 * 109.33631 * 187.25275 * 18 17 16 20 20 N 1.47075 * 108.52094 * 306.17105 * 19 18 17 21 21 S 1.65599 * 120.87816 * 231.18527 * 20 19 18 22 22 C 1.81397 * 104.44825 * 90.00229 * 21 20 19 23 23 O 1.42105 * 104.27797 * 206.07341 * 21 20 19 24 24 O 1.42101 * 104.27901 * 333.93049 * 21 20 19 25 25 C 1.47077 * 118.23886 * 51.45978 * 20 19 18 26 26 C 1.46893 * 111.00047 * 294.29927 * 17 16 15 27 27 H 1.08999 * 109.46930 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47126 * 299.99563 * 1 2 3 29 29 H 1.08997 * 109.47144 * 59.99598 * 1 2 3 30 30 H 1.09002 * 109.46475 * 294.99576 * 4 2 1 31 31 H 1.08999 * 109.47433 * 54.99416 * 4 2 1 32 32 H 1.09004 * 109.47219 * 299.99869 * 5 4 2 33 33 H 1.08999 * 109.47543 * 59.99356 * 5 4 2 34 34 H 0.97000 * 120.00512 * 180.02562 * 9 8 6 35 35 H 1.00898 * 111.00117 * 151.04783 * 14 2 1 36 36 H 1.08993 * 109.47166 * 60.00560 * 15 14 2 37 37 H 1.08994 * 109.47264 * 299.99859 * 15 14 2 38 38 H 1.08995 * 109.46964 * 59.99840 * 16 15 14 39 39 H 1.09007 * 109.46742 * 300.00102 * 16 15 14 40 40 H 1.08998 * 109.49149 * 67.29677 * 18 17 16 41 41 H 1.08998 * 109.49119 * 307.20997 * 18 17 16 42 42 H 1.09000 * 109.62511 * 186.45793 * 19 18 17 43 43 H 1.09009 * 109.62732 * 65.88429 * 19 18 17 44 44 H 1.09003 * 109.47352 * 180.02562 * 22 21 20 45 45 H 1.09004 * 109.47032 * 299.99803 * 22 21 20 46 46 H 1.09000 * 109.47124 * 60.00075 * 22 21 20 47 47 H 1.08999 * 109.62966 * 68.25482 * 25 20 19 48 48 H 1.09003 * 109.62478 * 188.82972 * 25 20 19 49 49 H 1.08998 * 109.49955 * 292.71056 * 26 17 16 50 50 H 1.09008 * 109.49312 * 52.79138 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6132 -1.3138 6 6 4.0671 -1.3240 -2.5440 7 1 3.3688 -1.8050 -3.2128 8 6 5.4184 -1.3611 -2.8152 9 7 6.2690 -0.7758 -2.0006 10 14 6.0413 -2.2428 -4.3398 11 1 4.8913 -2.8150 -5.0851 12 1 6.7645 -1.2795 -5.2080 13 1 6.9630 -3.3355 -3.9378 14 7 2.0197 -0.6925 1.1993 15 6 2.0825 0.2225 2.3468 16 6 2.5951 -0.5334 3.5744 17 7 2.6585 0.3818 4.7217 18 6 2.9169 -0.3528 5.9674 19 6 2.7959 0.6063 7.1565 20 7 3.6789 1.7583 6.9192 21 16 4.7636 2.2490 8.0703 22 6 6.2723 1.3128 7.6989 23 8 4.9563 3.6314 7.8036 24 8 4.1947 1.8119 9.2969 25 6 3.5688 2.4667 5.6350 26 6 3.6634 1.4308 4.5035 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.7516 -1.7714 -1.2057 31 1 1.6053 -0.2616 -2.1371 32 1 3.8532 0.4371 -1.3574 33 1 3.9995 -1.0727 -0.4261 34 1 7.2197 -0.8017 -2.1916 35 1 2.9173 -1.1205 1.0286 36 1 1.0872 0.6161 2.5525 37 1 2.7588 1.0461 2.1182 38 1 3.5904 -0.9274 3.3690 39 1 1.9184 -1.3568 3.8028 40 1 3.9222 -0.7731 5.9399 41 1 2.1887 -1.1569 6.0731 42 1 3.0979 0.0956 8.0709 43 1 1.7648 0.9479 7.2479 44 1 7.0492 1.5760 8.4167 45 1 6.0630 0.2451 7.7659 46 1 6.6110 1.5542 6.6914 47 1 2.6107 2.9837 5.5830 48 1 4.3820 3.1866 5.5431 49 1 4.6584 0.9857 4.4964 50 1 3.4767 1.9202 3.5476 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172490090.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:51 Heat of formation + Delta-G solvation = -95.488528 kcal Electronic energy + Delta-G solvation = -27309.841973 eV Core-core repulsion = 23497.836070 eV Total energy + Delta-G solvation = -3812.005903 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.11781 -38.59777 -38.27129 -37.07037 -36.11881 -35.09841 -33.10668 -32.11829 -31.00095 -30.33070 -28.96874 -27.09497 -25.99751 -24.82804 -23.30694 -22.43840 -21.59483 -21.00893 -19.79946 -18.76907 -18.51950 -17.36457 -17.24124 -16.86804 -16.78129 -16.54444 -15.94650 -15.89168 -15.61128 -15.47519 -15.21998 -14.62363 -14.45660 -14.26829 -14.12557 -14.03604 -13.88055 -13.63510 -13.33345 -13.27792 -13.21261 -13.12302 -12.90320 -12.86040 -12.83008 -12.59710 -12.35874 -12.26551 -12.18533 -12.11938 -12.03134 -11.78698 -11.58737 -11.46390 -11.26785 -10.93515 -10.55378 -10.12049 -9.33749 -9.23646 -8.21009 -6.30777 -0.75118 1.38721 1.39847 1.52480 1.58796 2.40272 2.71752 2.90029 3.10741 3.12413 3.47817 3.59052 3.96902 4.00217 4.01769 4.06088 4.16144 4.18228 4.28268 4.31819 4.36031 4.45636 4.50070 4.51471 4.59688 4.74304 4.79675 4.81739 4.88210 4.93168 4.95721 5.02073 5.02862 5.05213 5.10853 5.13600 5.17769 5.24069 5.46658 5.52450 5.54700 5.70924 5.84373 6.02639 6.10349 6.24486 6.27562 6.46698 6.85726 7.38313 8.90372 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014860 B = 0.002260 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.811975 B =12384.657842 C =13621.141109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.090 3.910 3 H 0.026 0.974 4 C -0.103 4.103 5 C 0.029 3.971 6 C -0.541 4.541 7 H 0.057 0.943 8 C 0.002 3.998 9 N -0.931 5.931 10 Si 0.961 3.039 11 H -0.264 1.264 12 H -0.279 1.279 13 H -0.278 1.278 14 N -0.688 5.688 15 C 0.068 3.932 16 C 0.069 3.931 17 N -0.538 5.538 18 C 0.040 3.960 19 C 0.127 3.873 20 N -1.004 6.004 21 S 2.619 3.381 22 C -0.657 4.657 23 O -0.993 6.993 24 O -0.988 6.988 25 C 0.131 3.869 26 C 0.033 3.967 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.056 0.944 32 H -0.017 1.017 33 H 0.000 1.000 34 H 0.262 0.738 35 H 0.337 0.663 36 H 0.080 0.920 37 H 0.018 0.982 38 H 0.023 0.977 39 H 0.089 0.911 40 H 0.044 0.956 41 H 0.101 0.899 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.144 0.856 45 H 0.145 0.855 46 H 0.139 0.861 47 H 0.079 0.921 48 H 0.100 0.900 49 H 0.040 0.960 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.882 2.748 20.808 21.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.020 4.020 3 H 0.045 0.955 4 C -0.141 4.141 5 C -0.008 4.008 6 C -0.579 4.579 7 H 0.075 0.925 8 C -0.196 4.196 9 N -0.571 5.571 10 Si 0.786 3.214 11 H -0.188 1.188 12 H -0.205 1.205 13 H -0.204 1.204 14 N -0.321 5.321 15 C -0.061 4.061 16 C -0.059 4.059 17 N -0.263 5.263 18 C -0.090 4.090 19 C 0.002 3.998 20 N -0.842 5.842 21 S 2.716 3.284 22 C -0.810 4.810 23 O -0.984 6.984 24 O -0.979 6.979 25 C 0.005 3.995 26 C -0.096 4.096 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.001 0.999 33 H 0.018 0.982 34 H 0.071 0.929 35 H 0.156 0.844 36 H 0.099 0.901 37 H 0.036 0.964 38 H 0.041 0.959 39 H 0.107 0.893 40 H 0.062 0.938 41 H 0.119 0.881 42 H 0.125 0.875 43 H 0.097 0.903 44 H 0.162 0.838 45 H 0.163 0.837 46 H 0.157 0.843 47 H 0.097 0.903 48 H 0.118 0.882 49 H 0.059 0.941 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.973 3.406 21.750 22.811 hybrid contribution 2.659 -0.544 -1.631 3.167 sum -3.314 2.862 20.119 20.590 Atomic orbital electron populations 1.21702 0.93187 1.02148 1.01474 1.21499 0.96382 0.94829 0.89304 0.95549 1.21663 0.96187 0.99902 0.96347 1.18986 0.92077 0.94372 0.95396 1.21719 0.92483 1.34337 1.09323 0.92471 1.25916 0.97393 0.96363 0.99936 1.70082 1.02685 1.45422 1.38914 0.85459 0.78404 0.78304 0.79252 1.18770 1.20528 1.20364 1.60611 1.33535 1.33129 1.04831 1.21918 1.00901 0.93403 0.89914 1.21914 0.99459 0.94959 0.89618 1.61785 1.48318 1.13669 1.02517 1.22588 1.01251 0.96232 0.88888 1.21609 0.95303 0.85214 0.97664 1.57713 1.52210 1.43213 1.31055 1.04450 0.76647 0.74426 0.72848 1.30428 1.20612 1.16472 1.13524 1.93563 1.87069 1.32551 1.85204 1.93559 1.76654 1.83659 1.44009 1.21597 1.04030 0.93300 0.80549 1.22689 0.93670 0.93897 0.99362 0.92296 0.92224 0.92085 0.92574 0.92564 0.99857 0.98183 0.92877 0.84372 0.90124 0.96427 0.95860 0.89271 0.93810 0.88124 0.87499 0.90315 0.83768 0.83670 0.84293 0.90299 0.88225 0.94127 0.89843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 9.42 71.98 0.68 -2.72 16 2 C 0.09 2.96 2.65 44.92 0.12 3.08 16 3 H 0.03 0.93 7.80 -2.39 -0.02 0.91 16 4 C -0.10 -4.13 4.74 30.59 0.15 -3.99 16 5 C 0.03 1.47 4.80 29.84 0.14 1.61 16 6 C -0.54 -30.25 9.11 25.60 0.23 -30.01 16 7 H 0.06 3.11 7.74 -2.91 -0.02 3.08 16 8 C 0.00 0.10 5.46 84.65 0.46 0.56 16 9 N -0.93 -55.20 13.29 21.45 0.28 -54.92 16 10 Si 0.96 43.66 29.54 68.60 2.03 45.69 16 11 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 12 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 13 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 14 N -0.69 -21.54 6.31 -491.57 -3.10 -24.64 16 15 C 0.07 1.77 5.41 86.31 0.47 2.24 16 16 C 0.07 1.50 5.22 86.31 0.45 1.95 16 17 N -0.54 -9.92 4.63 -894.30 -4.14 -14.06 16 18 C 0.04 0.55 5.62 86.38 0.49 1.04 16 19 C 0.13 1.68 6.46 86.35 0.56 2.24 16 20 N -1.00 -15.02 3.25 -511.34 -1.66 -16.68 16 21 S 2.62 40.37 6.06 -56.49 -0.34 40.02 16 22 C -0.66 -5.10 10.99 113.37 1.25 -3.85 16 23 O -0.99 -22.63 16.78 -127.65 -2.14 -24.77 16 24 O -0.99 -21.03 16.79 -127.65 -2.14 -23.17 16 25 C 0.13 2.11 6.50 86.50 0.56 2.67 16 26 C 0.03 0.61 5.48 86.54 0.47 1.08 16 27 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.06 1.42 7.45 -2.39 -0.02 1.41 16 29 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 32 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 33 H 0.00 0.00 6.43 -2.39 -0.02 -0.02 16 34 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 35 H 0.34 12.10 6.47 -89.70 -0.58 11.52 16 36 H 0.08 2.01 7.44 -2.39 -0.02 2.00 16 37 H 0.02 0.50 6.31 -2.39 -0.02 0.48 16 38 H 0.02 0.57 8.12 -2.39 -0.02 0.55 16 39 H 0.09 1.87 7.97 -2.38 -0.02 1.85 16 40 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.10 1.18 7.99 -2.39 -0.02 1.16 16 42 H 0.11 1.10 7.19 -2.39 -0.02 1.08 16 43 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 44 H 0.14 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.14 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 48 H 0.10 1.46 7.18 -2.39 -0.02 1.44 16 49 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.08 1.67 6.16 -2.38 -0.01 1.65 16 Total: -1.00 -72.49 400.10 -4.87 -77.37 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.32 Total: 19.28 kcal Atomic # 6 Polarization: -30.14 SS G_CDS: 6.02 Total: -24.11 kcal Atomic # 7 Polarization: -101.68 SS G_CDS: -8.62 Total: -110.30 kcal Atomic # 8 Polarization: -43.66 SS G_CDS: -4.29 Total: -47.94 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: 40.37 SS G_CDS: -0.34 Total: 40.02 kcal Total: -72.49 -4.87 -77.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490090.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.122 kcal (2) G-P(sol) polarization free energy of solvation -72.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds