Wall clock time and date at job start Tue Mar 31 2020 17:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47146 * 2 1 4 4 C 1.53004 * 109.47154 * 119.99832 * 2 1 3 5 5 C 1.53003 * 109.47227 * 185.00284 * 4 2 1 6 6 C 1.50697 * 109.47140 * 180.02562 * 5 4 2 7 7 H 1.07997 * 120.00004 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99697 * 180.02562 * 6 5 4 9 9 N 1.31523 * 119.99606 * 179.97438 * 8 6 5 10 10 Si 1.86789 * 120.00451 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.47553 * 89.99726 * 10 8 6 12 12 H 1.48500 * 109.47553 * 210.00166 * 10 8 6 13 13 H 1.48504 * 109.47259 * 330.00174 * 10 8 6 14 14 N 1.46903 * 109.47500 * 239.99656 * 2 1 3 15 15 C 1.46898 * 110.99673 * 84.99841 * 14 2 1 16 16 C 1.53006 * 109.47006 * 180.02562 * 15 14 2 17 17 N 1.46898 * 109.47006 * 180.02562 * 16 15 14 18 18 C 1.46893 * 111.00317 * 294.30017 * 17 16 15 19 19 C 1.53236 * 109.34286 * 172.74816 * 18 17 16 20 20 N 1.47078 * 108.52229 * 53.82757 * 19 18 17 21 21 S 1.65606 * 120.88256 * 128.79463 * 20 19 18 22 22 C 1.81398 * 104.44883 * 270.02434 * 21 20 19 23 23 O 1.42102 * 104.27595 * 26.09387 * 21 20 19 24 24 O 1.42099 * 104.27952 * 153.95222 * 21 20 19 25 25 C 1.47077 * 118.24021 * 308.81685 * 20 19 18 26 26 C 1.46900 * 110.99814 * 169.99400 * 17 16 15 27 27 H 1.08998 * 109.46692 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47047 * 300.00187 * 1 2 3 29 29 H 1.08996 * 109.46853 * 60.00246 * 1 2 3 30 30 H 1.08997 * 109.47200 * 304.99808 * 4 2 1 31 31 H 1.08997 * 109.46987 * 64.99958 * 4 2 1 32 32 H 1.09007 * 109.46611 * 299.99823 * 5 4 2 33 33 H 1.08997 * 109.46938 * 59.99672 * 5 4 2 34 34 H 0.96996 * 119.99801 * 179.97438 * 9 8 6 35 35 H 1.00894 * 111.00528 * 208.95313 * 14 2 1 36 36 H 1.09001 * 109.47392 * 60.00807 * 15 14 2 37 37 H 1.09001 * 109.47520 * 300.00529 * 15 14 2 38 38 H 1.09001 * 109.47002 * 299.99782 * 16 15 14 39 39 H 1.08993 * 109.46955 * 60.00219 * 16 15 14 40 40 H 1.08999 * 109.49199 * 292.70961 * 18 17 16 41 41 H 1.09000 * 109.49377 * 52.78798 * 18 17 16 42 42 H 1.09003 * 109.63099 * 294.12254 * 19 18 17 43 43 H 1.08999 * 109.63335 * 173.54324 * 19 18 17 44 44 H 1.09003 * 109.47028 * 59.99956 * 22 21 20 45 45 H 1.08996 * 109.47364 * 179.97438 * 22 21 20 46 46 H 1.09003 * 109.47054 * 299.99926 * 22 21 20 47 47 H 1.08998 * 109.63007 * 291.47478 * 25 20 19 48 48 H 1.08993 * 109.63489 * 170.89007 * 25 20 19 49 49 H 1.09000 * 109.49719 * 307.21642 * 26 17 16 50 50 H 1.09003 * 109.48868 * 67.29648 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.6132 1.3138 6 6 4.0672 -1.3241 2.5439 7 1 3.3688 -1.8045 3.2130 8 6 5.4185 -1.3603 2.8157 9 7 5.8569 -1.9803 3.8895 10 14 6.6265 -0.5288 1.6588 11 1 6.8310 0.8790 2.0848 12 1 7.9238 -1.2505 1.6953 13 1 6.0850 -0.5537 0.2762 14 7 2.0198 -0.6926 -1.1994 15 6 2.0825 0.2225 -2.3468 16 6 2.5952 -0.5333 -3.5744 17 7 2.6585 0.3819 -4.7217 18 6 1.3152 0.8288 -5.1135 19 6 1.4348 1.9148 -6.1880 20 7 2.2626 1.3953 -7.2871 21 16 1.7384 1.4731 -8.8561 22 6 0.8377 -0.0808 -9.1100 23 8 0.8432 2.5767 -8.8721 24 8 2.9335 1.4881 -9.6246 25 6 3.5681 0.8044 -6.9559 26 6 3.3645 -0.2378 -5.8511 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6054 -0.2617 2.1370 31 1 1.7516 -1.7715 1.2056 32 1 3.9995 -1.0728 0.4260 33 1 3.8531 0.4370 1.3574 34 1 6.8075 -2.0061 4.0805 35 1 2.9174 -1.1205 -1.0287 36 1 2.7589 1.0461 -2.1182 37 1 1.0871 0.6163 -2.5525 38 1 3.5905 -0.9273 -3.3690 39 1 1.9185 -1.3566 -3.8029 40 1 0.7524 -0.0158 -5.5110 41 1 0.7983 1.2335 -4.2433 42 1 1.9058 2.8009 -5.7622 43 1 0.4438 2.1685 -6.5642 44 1 0.0076 -0.1388 -8.4060 45 1 0.4525 -0.1152 -10.1290 46 1 1.5115 -0.9221 -8.9473 47 1 4.2441 1.5837 -6.6040 48 1 3.9875 0.3239 -7.8398 49 1 4.3338 -0.6068 -5.5159 50 1 2.7732 -1.0676 -6.2384 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172490091.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:55 Heat of formation + Delta-G solvation = -65.020136 kcal Electronic energy + Delta-G solvation = -27307.047872 eV Core-core repulsion = 23496.363178 eV Total energy + Delta-G solvation = -3810.684694 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.48753 -37.61236 -37.45373 -36.40140 -35.28288 -33.22658 -31.87893 -31.52434 -29.99369 -29.82863 -28.13296 -25.75128 -24.90046 -24.24729 -21.77592 -21.09382 -20.93182 -19.65372 -19.21138 -18.18576 -16.85908 -16.81636 -16.62427 -15.98961 -15.73456 -15.47214 -15.05076 -14.91445 -14.81460 -14.29714 -14.06220 -13.87555 -13.74376 -13.68280 -13.28918 -12.90379 -12.78142 -12.61570 -12.54936 -12.51616 -12.28774 -12.23470 -11.98279 -11.72646 -11.67932 -11.56625 -11.56446 -11.38505 -11.17472 -11.00188 -10.71879 -10.52949 -9.97984 -9.79572 -9.56152 -9.47645 -9.20654 -8.61017 -8.56810 -8.16387 -6.06773 -4.04794 -0.23695 2.11198 3.27679 3.35518 3.36989 3.39254 3.44168 3.62327 4.05001 4.30681 4.37075 4.41898 4.50719 4.63724 4.69939 4.77898 4.85343 4.97628 5.04108 5.12644 5.20501 5.26606 5.28163 5.32262 5.36452 5.51404 5.56515 5.58545 5.62861 5.67574 5.77454 5.85517 5.95570 6.05754 6.07718 6.20675 6.35952 6.38492 6.69047 6.72350 6.74269 6.83090 7.23769 7.26153 7.47141 7.69859 7.77275 8.51803 8.98715 9.55586 11.06741 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.019434 B = 0.002215 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.421805 B =12638.645913 C =13615.578229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.082 3.918 3 H 0.038 0.962 4 C -0.106 4.106 5 C -0.014 4.014 6 C -0.519 4.519 7 H 0.072 0.928 8 C 0.065 3.935 9 N -0.903 5.903 10 Si 0.882 3.118 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.267 1.267 14 N -0.689 5.689 15 C 0.062 3.938 16 C 0.057 3.943 17 N -0.535 5.535 18 C 0.037 3.963 19 C 0.127 3.873 20 N -1.001 6.001 21 S 2.611 3.389 22 C -0.675 4.675 23 O -0.954 6.954 24 O -0.955 6.955 25 C 0.127 3.873 26 C 0.041 3.959 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.042 0.958 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.013 0.987 33 H 0.008 0.992 34 H 0.263 0.737 35 H 0.349 0.651 36 H 0.037 0.963 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.044 0.956 40 H 0.038 0.962 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.127 0.873 45 H 0.127 0.873 46 H 0.127 0.873 47 H 0.083 0.917 48 H 0.093 0.907 49 H 0.090 0.910 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.027 4.701 -26.863 29.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.028 4.028 3 H 0.057 0.943 4 C -0.144 4.144 5 C -0.052 4.052 6 C -0.557 4.557 7 H 0.090 0.910 8 C -0.136 4.136 9 N -0.542 5.542 10 Si 0.709 3.291 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.192 1.192 14 N -0.324 5.324 15 C -0.068 4.068 16 C -0.070 4.070 17 N -0.260 5.260 18 C -0.093 4.093 19 C 0.001 3.999 20 N -0.839 5.839 21 S 2.704 3.296 22 C -0.824 4.824 23 O -0.945 6.945 24 O -0.945 6.945 25 C 0.002 3.998 26 C -0.089 4.089 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.031 0.969 33 H 0.026 0.974 34 H 0.073 0.927 35 H 0.170 0.830 36 H 0.055 0.945 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.110 0.890 42 H 0.101 0.899 43 H 0.111 0.889 44 H 0.145 0.855 45 H 0.145 0.855 46 H 0.145 0.855 47 H 0.101 0.899 48 H 0.111 0.889 49 H 0.108 0.892 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -11.061 5.521 -27.399 30.059 hybrid contribution 0.820 -0.541 -0.202 1.004 sum -10.241 4.980 -27.601 29.858 Atomic orbital electron populations 1.21772 0.95480 1.01812 1.00274 1.21628 0.94801 0.96038 0.90295 0.94348 1.21666 0.98069 1.00086 0.94613 1.19602 0.91954 0.96192 0.97405 1.21125 0.92911 1.34288 1.07362 0.91015 1.25056 0.98456 0.94997 0.95077 1.69919 1.14618 1.43464 1.26210 0.86757 0.80606 0.79709 0.81997 1.20413 1.21407 1.19178 1.60545 1.34459 1.32770 1.04627 1.21915 1.00226 0.94380 0.90295 1.22075 1.01567 0.93575 0.89823 1.61762 1.17560 1.40517 1.06189 1.22582 0.90265 0.97640 0.98809 1.21556 0.94954 0.96858 0.86512 1.57813 1.27220 1.74876 1.24040 1.04927 0.74934 0.76843 0.72943 1.30604 1.15758 1.24484 1.11566 1.93614 1.67481 1.47908 1.85469 1.93613 1.44699 1.87195 1.68985 1.21546 0.83727 0.96561 0.98009 1.22505 0.99792 0.95213 0.91395 0.92296 0.92833 0.93840 0.92086 0.91863 0.96886 0.97407 0.92746 0.82975 0.94519 0.91450 0.90519 0.93815 0.94411 0.88956 0.89879 0.88933 0.85461 0.85476 0.85474 0.89850 0.88902 0.89199 0.94438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.42 37.16 0.35 -1.44 16 2 C 0.08 1.27 2.65 -67.71 -0.18 1.10 16 3 H 0.04 0.62 7.80 -51.93 -0.40 0.21 16 4 C -0.11 -2.03 4.74 -26.73 -0.13 -2.16 16 5 C -0.01 -0.32 3.87 -27.88 -0.11 -0.43 16 6 C -0.52 -14.60 9.66 -34.44 -0.33 -14.93 16 7 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 8 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 9 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 10 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 14 N -0.69 -10.07 6.31 -106.72 -0.67 -10.74 16 15 C 0.06 0.74 5.41 -3.82 -0.02 0.72 16 16 C 0.06 0.59 5.22 -3.82 -0.02 0.57 16 17 N -0.54 -4.75 4.63 -234.32 -1.08 -5.84 16 18 C 0.04 0.27 5.46 -3.71 -0.02 0.25 16 19 C 0.13 0.87 6.47 -3.60 -0.02 0.85 16 20 N -1.00 -6.99 3.26 -113.24 -0.37 -7.36 16 21 S 2.61 18.50 6.06 -107.50 -0.65 17.85 16 22 C -0.67 -2.46 10.99 101.05 1.11 -1.35 16 23 O -0.95 -9.81 16.79 -57.54 -0.97 -10.78 16 24 O -0.95 -9.82 16.79 -57.54 -0.97 -10.78 16 25 C 0.13 0.87 6.47 -3.60 -0.02 0.85 16 26 C 0.04 0.29 5.62 -3.70 -0.02 0.27 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.04 0.51 7.45 -51.93 -0.39 0.12 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.01 0.30 5.48 -51.92 -0.28 0.01 16 33 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.35 5.64 6.47 -39.29 -0.25 5.38 16 36 H 0.04 0.49 8.06 -51.93 -0.42 0.07 16 37 H 0.07 0.75 5.70 -51.93 -0.30 0.45 16 38 H 0.08 0.84 7.97 -51.93 -0.41 0.43 16 39 H 0.04 0.46 8.12 -51.93 -0.42 0.03 16 40 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.09 0.68 6.16 -51.93 -0.32 0.36 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.09 0.53 7.19 -51.93 -0.37 0.15 16 44 H 0.13 0.34 8.14 -51.92 -0.42 -0.08 16 45 H 0.13 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.13 0.34 8.14 -51.92 -0.42 -0.08 16 47 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.09 0.52 7.19 -51.93 -0.37 0.15 16 49 H 0.09 0.62 7.99 -51.93 -0.41 0.21 16 50 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 LS Contribution 396.48 15.07 5.97 5.97 Total: -1.00 -34.96 396.48 -11.14 -46.09 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -8.99 Total: -0.41 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: 0.49 Total: -13.92 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: -1.35 Total: -50.87 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -1.93 Total: -21.56 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Atomic # 16 Polarization: 18.50 SS G_CDS: -0.65 Total: 17.85 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.96 -11.14 -46.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490091.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.927 kcal (2) G-P(sol) polarization free energy of solvation -34.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds