Wall clock time and date at job start Tue Mar 31 2020 17:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47146 * 2 1 4 4 C 1.53004 * 109.47154 * 119.99832 * 2 1 3 5 5 C 1.53003 * 109.47227 * 185.00284 * 4 2 1 6 6 C 1.50697 * 109.47140 * 180.02562 * 5 4 2 7 7 H 1.07997 * 120.00004 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99697 * 180.02562 * 6 5 4 9 9 N 1.31523 * 119.99606 * 179.97438 * 8 6 5 10 10 Si 1.86789 * 120.00451 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.47553 * 89.99726 * 10 8 6 12 12 H 1.48500 * 109.47553 * 210.00166 * 10 8 6 13 13 H 1.48504 * 109.47259 * 330.00174 * 10 8 6 14 14 N 1.46903 * 109.47500 * 239.99656 * 2 1 3 15 15 C 1.46898 * 110.99673 * 84.99841 * 14 2 1 16 16 C 1.53006 * 109.47006 * 180.02562 * 15 14 2 17 17 N 1.46898 * 109.47006 * 180.02562 * 16 15 14 18 18 C 1.46893 * 111.00317 * 294.30017 * 17 16 15 19 19 C 1.53236 * 109.34286 * 172.74816 * 18 17 16 20 20 N 1.47078 * 108.52229 * 53.82757 * 19 18 17 21 21 S 1.65606 * 120.88256 * 128.79463 * 20 19 18 22 22 C 1.81398 * 104.44883 * 270.02434 * 21 20 19 23 23 O 1.42102 * 104.27595 * 26.09387 * 21 20 19 24 24 O 1.42099 * 104.27952 * 153.95222 * 21 20 19 25 25 C 1.47077 * 118.24021 * 308.81685 * 20 19 18 26 26 C 1.46900 * 110.99814 * 169.99400 * 17 16 15 27 27 H 1.08998 * 109.46692 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47047 * 300.00187 * 1 2 3 29 29 H 1.08996 * 109.46853 * 60.00246 * 1 2 3 30 30 H 1.08997 * 109.47200 * 304.99808 * 4 2 1 31 31 H 1.08997 * 109.46987 * 64.99958 * 4 2 1 32 32 H 1.09007 * 109.46611 * 299.99823 * 5 4 2 33 33 H 1.08997 * 109.46938 * 59.99672 * 5 4 2 34 34 H 0.96996 * 119.99801 * 179.97438 * 9 8 6 35 35 H 1.00894 * 111.00528 * 208.95313 * 14 2 1 36 36 H 1.09001 * 109.47392 * 60.00807 * 15 14 2 37 37 H 1.09001 * 109.47520 * 300.00529 * 15 14 2 38 38 H 1.09001 * 109.47002 * 299.99782 * 16 15 14 39 39 H 1.08993 * 109.46955 * 60.00219 * 16 15 14 40 40 H 1.08999 * 109.49199 * 292.70961 * 18 17 16 41 41 H 1.09000 * 109.49377 * 52.78798 * 18 17 16 42 42 H 1.09003 * 109.63099 * 294.12254 * 19 18 17 43 43 H 1.08999 * 109.63335 * 173.54324 * 19 18 17 44 44 H 1.09003 * 109.47028 * 59.99956 * 22 21 20 45 45 H 1.08996 * 109.47364 * 179.97438 * 22 21 20 46 46 H 1.09003 * 109.47054 * 299.99926 * 22 21 20 47 47 H 1.08998 * 109.63007 * 291.47478 * 25 20 19 48 48 H 1.08993 * 109.63489 * 170.89007 * 25 20 19 49 49 H 1.09000 * 109.49719 * 307.21642 * 26 17 16 50 50 H 1.09003 * 109.48868 * 67.29648 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.6132 1.3138 6 6 4.0672 -1.3241 2.5439 7 1 3.3688 -1.8045 3.2130 8 6 5.4185 -1.3603 2.8157 9 7 5.8569 -1.9803 3.8895 10 14 6.6265 -0.5288 1.6588 11 1 6.8310 0.8790 2.0848 12 1 7.9238 -1.2505 1.6953 13 1 6.0850 -0.5537 0.2762 14 7 2.0198 -0.6926 -1.1994 15 6 2.0825 0.2225 -2.3468 16 6 2.5952 -0.5333 -3.5744 17 7 2.6585 0.3819 -4.7217 18 6 1.3152 0.8288 -5.1135 19 6 1.4348 1.9148 -6.1880 20 7 2.2626 1.3953 -7.2871 21 16 1.7384 1.4731 -8.8561 22 6 0.8377 -0.0808 -9.1100 23 8 0.8432 2.5767 -8.8721 24 8 2.9335 1.4881 -9.6246 25 6 3.5681 0.8044 -6.9559 26 6 3.3645 -0.2378 -5.8511 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6054 -0.2617 2.1370 31 1 1.7516 -1.7715 1.2056 32 1 3.9995 -1.0728 0.4260 33 1 3.8531 0.4370 1.3574 34 1 6.8075 -2.0061 4.0805 35 1 2.9174 -1.1205 -1.0287 36 1 2.7589 1.0461 -2.1182 37 1 1.0871 0.6163 -2.5525 38 1 3.5905 -0.9273 -3.3690 39 1 1.9185 -1.3566 -3.8029 40 1 0.7524 -0.0158 -5.5110 41 1 0.7983 1.2335 -4.2433 42 1 1.9058 2.8009 -5.7622 43 1 0.4438 2.1685 -6.5642 44 1 0.0076 -0.1388 -8.4060 45 1 0.4525 -0.1152 -10.1290 46 1 1.5115 -0.9221 -8.9473 47 1 4.2441 1.5837 -6.6040 48 1 3.9875 0.3239 -7.8398 49 1 4.3338 -0.6068 -5.5159 50 1 2.7732 -1.0676 -6.2384 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172490091.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:54 Heat of formation + Delta-G solvation = -93.186021 kcal Electronic energy + Delta-G solvation = -27308.269236 eV Core-core repulsion = 23496.363178 eV Total energy + Delta-G solvation = -3811.906059 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.11466 -38.63917 -38.26274 -37.05755 -36.11581 -35.05286 -33.25586 -32.14156 -31.33517 -30.31251 -28.95865 -27.20733 -25.99544 -24.80287 -22.97654 -22.41958 -21.56351 -21.05605 -19.78323 -18.94631 -18.74141 -17.35941 -17.21526 -16.96537 -16.71035 -16.32423 -16.20650 -15.78179 -15.59650 -15.48125 -15.02940 -14.89045 -14.50682 -14.29807 -14.17593 -14.05004 -14.00507 -13.55210 -13.41127 -13.33791 -13.21401 -13.17906 -12.94422 -12.87252 -12.84385 -12.58975 -12.44313 -12.23339 -12.13057 -12.00698 -11.79862 -11.67478 -11.65421 -11.44507 -11.29305 -11.09137 -10.76457 -10.10359 -9.31889 -9.21799 -8.29391 -6.33323 -0.73898 1.35525 1.36443 1.48120 1.60047 2.35266 2.72797 2.92802 3.05784 3.11784 3.49086 3.61794 3.90180 4.02429 4.04098 4.06331 4.18075 4.19183 4.28941 4.33515 4.36619 4.44321 4.46980 4.51103 4.63911 4.73859 4.75878 4.83027 4.88849 4.90016 4.93952 4.98310 4.99875 5.03902 5.07353 5.13954 5.14176 5.18531 5.43505 5.53492 5.53814 5.56186 5.67379 6.05322 6.12450 6.25715 6.29227 6.48421 6.75180 7.31087 8.87547 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.019434 B = 0.002215 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.421805 B =12638.645913 C =13615.578229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.089 3.911 3 H 0.037 0.963 4 C -0.099 4.099 5 C -0.008 4.008 6 C -0.531 4.531 7 H 0.030 0.970 8 C 0.002 3.998 9 N -0.952 5.952 10 Si 0.953 3.047 11 H -0.271 1.271 12 H -0.285 1.285 13 H -0.243 1.243 14 N -0.691 5.691 15 C 0.066 3.934 16 C 0.067 3.933 17 N -0.548 5.548 18 C 0.038 3.962 19 C 0.126 3.874 20 N -1.004 6.004 21 S 2.615 3.385 22 C -0.653 4.653 23 O -0.993 6.993 24 O -0.994 6.994 25 C 0.127 3.873 26 C 0.041 3.959 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.023 0.977 33 H 0.010 0.990 34 H 0.266 0.734 35 H 0.339 0.661 36 H 0.023 0.977 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.046 0.954 40 H 0.051 0.949 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.105 0.895 44 H 0.145 0.855 45 H 0.144 0.856 46 H 0.145 0.855 47 H 0.071 0.929 48 H 0.105 0.895 49 H 0.091 0.909 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.923 4.805 -29.459 32.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.021 4.021 3 H 0.055 0.945 4 C -0.137 4.137 5 C -0.046 4.046 6 C -0.569 4.569 7 H 0.048 0.952 8 C -0.195 4.195 9 N -0.593 5.593 10 Si 0.776 3.224 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.166 1.166 14 N -0.324 5.324 15 C -0.064 4.064 16 C -0.061 4.061 17 N -0.273 5.273 18 C -0.092 4.092 19 C 0.001 3.999 20 N -0.841 5.841 21 S 2.713 3.287 22 C -0.806 4.806 23 O -0.984 6.984 24 O -0.984 6.984 25 C 0.001 3.999 26 C -0.088 4.088 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.041 0.959 33 H 0.029 0.971 34 H 0.074 0.926 35 H 0.159 0.841 36 H 0.042 0.958 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.111 0.889 42 H 0.089 0.911 43 H 0.123 0.877 44 H 0.163 0.837 45 H 0.162 0.838 46 H 0.163 0.837 47 H 0.089 0.911 48 H 0.123 0.877 49 H 0.109 0.891 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.966 5.670 -30.007 32.799 hybrid contribution 1.022 -0.646 0.658 1.377 sum -10.944 5.023 -29.349 31.723 Atomic orbital electron populations 1.21707 0.93339 1.02044 1.01591 1.21516 0.96424 0.95206 0.88915 0.94493 1.21541 0.95519 1.00065 0.96616 1.19526 0.94556 0.95373 0.95128 1.21501 0.92604 1.34180 1.08590 0.95171 1.26054 1.00740 0.95755 0.96901 1.70080 1.15267 1.45416 1.28537 0.85621 0.77697 0.78473 0.80581 1.19659 1.21045 1.16644 1.60610 1.33720 1.33253 1.04845 1.21943 1.00794 0.93669 0.89980 1.21897 1.00981 0.93522 0.89703 1.61731 1.18660 1.40434 1.06502 1.22609 0.89628 0.98047 0.98875 1.21567 0.95442 0.96400 0.86493 1.57701 1.27436 1.75194 1.23810 1.04556 0.74160 0.77677 0.72326 1.30389 1.15847 1.21152 1.13222 1.93561 1.67946 1.51011 1.85854 1.93560 1.46746 1.88218 1.69893 1.21557 0.83574 0.96263 0.98462 1.22538 0.99932 0.95513 0.90811 0.92596 0.92234 0.91846 0.92732 0.92848 0.95880 0.97136 0.92556 0.84141 0.95821 0.90118 0.91342 0.93591 0.93073 0.88947 0.91082 0.87704 0.83665 0.83806 0.83681 0.91096 0.87684 0.89114 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 9.42 71.98 0.68 -2.41 16 2 C 0.09 2.62 2.65 44.92 0.12 2.73 16 3 H 0.04 1.11 7.80 -2.39 -0.02 1.09 16 4 C -0.10 -3.76 4.74 30.60 0.15 -3.62 16 5 C -0.01 -0.38 3.87 29.85 0.12 -0.26 16 6 C -0.53 -30.54 9.66 25.60 0.25 -30.29 16 7 H 0.03 1.92 7.99 -2.91 -0.02 1.90 16 8 C 0.00 0.12 5.47 84.65 0.46 0.58 16 9 N -0.95 -59.93 13.96 21.45 0.30 -59.63 16 10 Si 0.95 44.03 27.47 68.60 1.88 45.92 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 H -0.24 -10.20 6.54 99.48 0.65 -9.55 16 14 N -0.69 -18.83 6.31 -491.55 -3.10 -21.93 16 15 C 0.07 1.43 5.41 86.31 0.47 1.90 16 16 C 0.07 1.23 5.22 86.31 0.45 1.68 16 17 N -0.55 -8.53 4.63 -895.26 -4.14 -12.68 16 18 C 0.04 0.46 5.46 86.38 0.47 0.93 16 19 C 0.13 1.54 6.47 86.35 0.56 2.10 16 20 N -1.00 -12.43 3.26 -512.18 -1.67 -14.10 16 21 S 2.62 33.40 6.06 -56.49 -0.34 33.06 16 22 C -0.65 -2.37 10.99 113.37 1.25 -1.12 16 23 O -0.99 -19.74 16.79 -127.65 -2.14 -21.88 16 24 O -0.99 -19.81 16.79 -127.65 -2.14 -21.95 16 25 C 0.13 1.55 6.47 86.35 0.56 2.11 16 26 C 0.04 0.50 5.62 86.39 0.49 0.99 16 27 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.06 1.28 7.45 -2.39 -0.02 1.26 16 30 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.02 1.01 5.48 -2.38 -0.01 1.00 16 33 H 0.01 0.47 7.57 -2.39 -0.02 0.45 16 34 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 35 H 0.34 10.39 6.47 -89.70 -0.58 9.81 16 36 H 0.02 0.59 8.06 -2.39 -0.02 0.57 16 37 H 0.08 1.55 5.70 -2.39 -0.01 1.54 16 38 H 0.07 1.37 7.97 -2.39 -0.02 1.35 16 39 H 0.05 0.83 8.12 -2.39 -0.02 0.81 16 40 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.09 1.11 6.16 -2.39 -0.01 1.10 16 42 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.10 1.01 7.19 -2.39 -0.02 0.99 16 44 H 0.14 0.14 8.14 -2.39 -0.02 0.12 16 45 H 0.14 0.18 8.14 -2.39 -0.02 0.16 16 46 H 0.14 0.14 8.14 -2.39 -0.02 0.12 16 47 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.11 1.01 7.19 -2.39 -0.02 0.99 16 49 H 0.09 1.08 7.99 -2.39 -0.02 1.06 16 50 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -77.13 396.48 -5.09 -82.21 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.27 Total: 15.67 kcal Atomic # 6 Polarization: -30.69 SS G_CDS: 6.01 Total: -24.68 kcal Atomic # 7 Polarization: -99.73 SS G_CDS: -8.62 Total: -108.35 kcal Atomic # 8 Polarization: -39.55 SS G_CDS: -4.29 Total: -43.83 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.88 Total: 45.92 kcal Atomic # 16 Polarization: 33.40 SS G_CDS: -0.34 Total: 33.06 kcal Total: -77.13 -5.09 -82.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490091.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.972 kcal (2) G-P(sol) polarization free energy of solvation -77.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds