Wall clock time and date at job start Tue Mar 31 2020 17:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47387 * 2 1 4 4 C 1.53004 * 109.46613 * 120.00034 * 2 1 3 5 5 C 1.52999 * 109.46550 * 184.99674 * 4 2 1 6 6 C 1.50703 * 109.46735 * 179.97438 * 5 4 2 7 7 H 1.07994 * 120.00082 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99866 * 179.97438 * 6 5 4 9 9 N 1.31519 * 120.00214 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00027 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47018 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47226 * 120.00050 * 10 8 6 13 13 H 1.48502 * 109.47126 * 240.00082 * 10 8 6 14 14 N 1.46900 * 109.46763 * 239.99819 * 2 1 3 15 15 C 1.46895 * 111.00137 * 85.00797 * 14 2 1 16 16 C 1.52997 * 109.47067 * 179.97438 * 15 14 2 17 17 O 1.42905 * 109.47611 * 64.99515 * 16 15 14 18 18 C 1.42896 * 113.99926 * 179.97438 * 17 16 15 19 19 H 1.09001 * 109.48884 * 54.97659 * 18 17 16 20 20 O 1.42900 * 109.48539 * 294.94229 * 18 17 16 21 21 C 1.42909 * 114.09748 * 301.18162 * 20 18 17 22 22 H 1.08993 * 109.48060 * 58.83000 * 21 20 18 23 23 C 1.52997 * 109.47866 * 178.85771 * 21 20 18 24 24 C 1.53093 * 109.40993 * 298.83922 * 21 20 18 25 25 H 1.08998 * 109.51871 * 177.51813 * 24 21 20 26 26 O 1.42899 * 109.52593 * 297.63778 * 24 21 20 27 27 C 1.53178 * 109.16816 * 57.61012 * 24 21 20 28 28 H 1.09004 * 109.53659 * 62.88276 * 27 24 21 29 29 O 1.42894 * 109.54541 * 183.14943 * 27 24 21 30 30 C 1.53095 * 109.47545 * 175.00167 * 18 17 16 31 31 H 1.09005 * 109.52277 * 182.34901 * 30 18 17 32 32 O 1.42905 * 109.52179 * 302.46765 * 30 18 17 33 33 H 1.08993 * 109.47387 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47074 * 300.00697 * 1 2 3 35 35 H 1.09002 * 109.46713 * 59.99760 * 1 2 3 36 36 H 1.08993 * 109.47099 * 304.99695 * 4 2 1 37 37 H 1.08997 * 109.47444 * 64.99840 * 4 2 1 38 38 H 1.08993 * 109.47437 * 299.99814 * 5 4 2 39 39 H 1.09005 * 109.47381 * 60.00195 * 5 4 2 40 40 H 0.96997 * 120.00058 * 180.02562 * 9 8 6 41 41 H 1.00906 * 110.99685 * 208.95469 * 14 2 1 42 42 H 1.08999 * 109.47634 * 59.99440 * 15 14 2 43 43 H 1.09004 * 109.46581 * 299.99553 * 15 14 2 44 44 H 1.09001 * 109.47257 * 304.99049 * 16 15 14 45 45 H 1.09001 * 109.47052 * 184.99767 * 16 15 14 46 46 H 1.08998 * 109.47245 * 59.99661 * 23 21 20 47 47 H 1.09005 * 109.46806 * 179.97438 * 23 21 20 48 48 H 1.08999 * 109.47142 * 299.99643 * 23 21 20 49 49 H 0.96704 * 114.00283 * 300.01259 * 26 24 21 50 50 H 0.96703 * 113.99887 * 179.55896 * 29 27 24 51 51 H 0.96691 * 114.00079 * 300.00005 * 32 30 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5648 -0.6134 1.3137 6 6 4.0670 -1.3233 2.5445 7 1 3.3685 -1.8037 3.2136 8 6 5.4183 -1.3603 2.8159 9 7 6.2689 -0.7757 2.0008 10 14 6.0409 -2.2409 4.3411 11 1 4.8909 -2.8123 5.0869 12 1 6.9626 -3.3340 3.9401 13 1 6.7642 -1.2768 5.2087 14 7 2.0196 -0.6925 -1.1994 15 6 2.0826 0.2225 -2.3469 16 6 2.5963 -0.5331 -3.5741 17 8 1.6513 -1.5392 -3.9442 18 6 2.0369 -2.3067 -5.0862 19 1 3.0228 -2.7397 -4.9173 20 8 2.0786 -1.4608 -6.2371 21 6 0.8371 -0.8186 -6.5347 22 1 0.5275 -0.2136 -5.6827 23 6 1.0079 0.0782 -7.7624 24 6 -0.2285 -1.8797 -6.8218 25 1 -1.1864 -1.3934 -7.0057 26 8 0.1505 -2.6382 -7.9721 27 6 -0.3508 -2.8101 -5.6111 28 1 -0.6884 -2.2398 -4.7457 29 8 -1.2906 -3.8475 -5.8984 30 6 1.0194 -3.4275 -5.3151 31 1 1.3349 -4.0388 -6.1607 32 8 0.9335 -4.2412 -4.1435 33 1 -0.3634 -1.0276 -0.0005 34 1 -0.3633 0.5139 0.8899 35 1 -0.3633 0.5139 -0.8900 36 1 1.6053 -0.2618 2.1369 37 1 1.7515 -1.7715 1.2057 38 1 3.9994 -1.0729 0.4261 39 1 3.8532 0.4369 1.3574 40 1 7.2196 -0.8021 2.1915 41 1 2.9173 -1.1206 -1.0287 42 1 2.7590 1.0461 -2.1182 43 1 1.0872 0.6163 -2.5525 44 1 3.5521 -1.0012 -3.3388 45 1 2.7273 0.1643 -4.4015 46 1 1.3172 -0.5271 -8.6144 47 1 0.0607 0.5676 -7.9895 48 1 1.7674 0.8329 -7.5581 49 1 0.2507 -2.1101 -8.7759 50 1 -1.4129 -4.4786 -5.1760 51 1 1.7682 -4.6607 -3.8940 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172491368.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:56 Heat of formation + Delta-G solvation = -253.632723 kcal Electronic energy + Delta-G solvation = -30868.859547 eV Core-core repulsion = 26574.950375 eV Total energy + Delta-G solvation = -4293.909172 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 333.208 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.81512 -38.06256 -37.35494 -37.08426 -35.82039 -35.57223 -33.34321 -32.13975 -31.67519 -30.69847 -29.32856 -27.70307 -26.77862 -25.03553 -23.86465 -22.69783 -21.98476 -21.26589 -20.45708 -19.51429 -18.34402 -17.97149 -17.56379 -17.26119 -16.43974 -16.22368 -15.95041 -15.55435 -15.44544 -15.09644 -14.58222 -14.52508 -14.22594 -14.03177 -13.77126 -13.41114 -13.16257 -12.87785 -12.74130 -12.58890 -12.54172 -12.49092 -12.35043 -12.05100 -11.73525 -11.60639 -11.50746 -11.29885 -11.17079 -11.00478 -10.92579 -10.70587 -10.47747 -10.38150 -10.30721 -10.10833 -9.90457 -9.75848 -9.60747 -9.27747 -9.02664 -8.37867 -7.91164 -6.02916 -4.04558 3.09156 3.29399 3.37098 3.41747 3.44076 3.71944 3.82577 3.96982 4.32306 4.37022 4.44389 4.55159 4.62232 4.81141 4.87077 4.95402 4.99933 5.14820 5.19378 5.24668 5.33180 5.33685 5.39154 5.46070 5.51561 5.56788 5.65392 5.69572 5.79508 5.83614 5.92988 5.99331 6.21811 6.39289 6.45592 6.55027 6.56944 6.93056 7.08266 7.12529 7.28482 7.38091 7.46872 7.53234 7.61128 7.79375 7.92367 7.98512 8.41105 9.02457 9.59796 11.08378 Molecular weight = 333.21amu Principal moments of inertia in cm(-1) A = 0.016800 B = 0.002455 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.284824 B =11400.644212 C =11501.502942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.082 3.918 3 H 0.035 0.965 4 C -0.114 4.114 5 C 0.021 3.979 6 C -0.517 4.517 7 H 0.056 0.944 8 C 0.056 3.944 9 N -0.897 5.897 10 Si 0.891 3.109 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.285 1.285 14 N -0.676 5.676 15 C 0.062 3.938 16 C 0.066 3.934 17 O -0.365 6.365 18 C 0.213 3.787 19 H 0.102 0.898 20 O -0.379 6.379 21 C 0.055 3.945 22 H 0.079 0.921 23 C -0.150 4.150 24 C 0.088 3.912 25 H 0.075 0.925 26 O -0.546 6.546 27 C 0.127 3.873 28 H 0.086 0.914 29 O -0.555 6.555 30 C 0.067 3.933 31 H 0.089 0.911 32 O -0.549 6.549 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.041 0.959 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.015 0.985 39 H 0.011 0.989 40 H 0.259 0.741 41 H 0.350 0.650 42 H 0.043 0.957 43 H 0.072 0.928 44 H 0.052 0.948 45 H 0.054 0.946 46 H 0.067 0.933 47 H 0.074 0.926 48 H 0.072 0.928 49 H 0.374 0.626 50 H 0.386 0.614 51 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.012 0.456 -21.242 24.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.027 4.027 3 H 0.053 0.947 4 C -0.152 4.152 5 C -0.016 4.016 6 C -0.555 4.555 7 H 0.074 0.926 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.719 3.281 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.211 1.211 14 N -0.311 5.311 15 C -0.068 4.068 16 C -0.011 4.011 17 O -0.285 6.285 18 C 0.116 3.884 19 H 0.120 0.880 20 O -0.300 6.300 21 C -0.003 4.003 22 H 0.097 0.903 23 C -0.207 4.207 24 C 0.028 3.972 25 H 0.093 0.907 26 O -0.352 6.352 27 C 0.067 3.933 28 H 0.104 0.896 29 O -0.361 6.361 30 C 0.007 3.993 31 H 0.107 0.893 32 O -0.356 6.356 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.033 0.967 39 H 0.030 0.970 40 H 0.069 0.931 41 H 0.171 0.829 42 H 0.061 0.939 43 H 0.091 0.909 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.085 0.915 47 H 0.093 0.907 48 H 0.091 0.909 49 H 0.222 0.778 50 H 0.234 0.766 51 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -13.132 0.255 -21.589 25.271 hybrid contribution 2.129 0.168 1.281 2.490 sum -11.003 0.423 -20.308 23.102 Atomic orbital electron populations 1.21766 0.95771 1.01750 0.99911 1.21598 0.94567 0.95869 0.90664 0.94708 1.21818 0.99542 0.99524 0.94302 1.19125 0.88871 0.96760 0.96870 1.21286 0.91940 1.34037 1.08251 0.92608 1.25027 0.97100 0.95642 0.96731 1.69968 1.02289 1.44317 1.37075 0.86546 0.78858 0.79464 0.83206 1.19710 1.21024 1.21073 1.60554 1.34536 1.32083 1.03951 1.21955 1.00826 0.93723 0.90267 1.22576 0.92040 0.90220 0.96246 1.88179 1.46410 1.49036 1.44925 1.24242 0.98769 0.87988 0.77360 0.88029 1.88105 1.32651 1.62791 1.46471 1.22759 0.84921 0.93459 0.99112 0.90297 1.21784 1.03105 0.99315 0.96471 1.22481 0.97076 0.91377 0.86237 0.90704 1.86609 1.91902 1.37704 1.18940 1.21741 0.87087 0.89026 0.95423 0.89596 1.86465 1.62252 1.41810 1.45557 1.23019 0.96433 0.90925 0.88948 0.89348 1.86469 1.38293 1.65674 1.45129 0.92319 0.93217 0.93945 0.92812 0.92419 0.96732 0.97049 0.93121 0.82856 0.93933 0.90922 0.92987 0.92794 0.91455 0.90667 0.90885 0.77790 0.76555 0.76592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 9.41 37.16 0.35 -1.67 16 2 C 0.08 1.44 2.65 -67.71 -0.18 1.26 16 3 H 0.03 0.62 7.80 -51.93 -0.40 0.22 16 4 C -0.11 -2.35 4.74 -26.73 -0.13 -2.48 16 5 C 0.02 0.53 4.80 -27.88 -0.13 0.39 16 6 C -0.52 -14.55 9.11 -34.44 -0.31 -14.87 16 7 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.62 13.29 55.43 0.74 -25.89 16 10 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 N -0.68 -11.31 6.26 -106.73 -0.67 -11.97 16 15 C 0.06 0.87 5.87 -3.83 -0.02 0.84 16 16 C 0.07 0.83 6.08 37.16 0.23 1.05 16 17 O -0.37 -4.73 8.62 -64.00 -0.55 -5.28 16 18 C 0.21 2.39 3.31 37.21 0.12 2.51 16 19 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 20 O -0.38 -4.16 9.65 -63.04 -0.61 -4.77 16 21 C 0.06 0.50 2.88 -26.68 -0.08 0.42 16 22 H 0.08 0.75 7.56 -51.93 -0.39 0.36 16 23 C -0.15 -0.92 9.21 37.16 0.34 -0.58 16 24 C 0.09 0.84 3.06 -26.59 -0.08 0.76 16 25 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 26 O -0.55 -5.40 12.52 -55.71 -0.70 -6.10 16 27 C 0.13 1.43 2.88 -26.55 -0.08 1.35 16 28 H 0.09 1.04 7.82 -51.93 -0.41 0.64 16 29 O -0.55 -6.57 13.17 -55.10 -0.73 -7.30 16 30 C 0.07 0.74 2.96 -26.59 -0.08 0.66 16 31 H 0.09 1.01 7.84 -51.93 -0.41 0.60 16 32 O -0.55 -6.15 12.79 -54.97 -0.70 -6.85 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.04 0.59 7.45 -51.93 -0.39 0.20 16 36 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.01 0.38 6.43 -51.93 -0.33 0.05 16 39 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 41 H 0.35 6.49 6.47 -39.29 -0.25 6.24 16 42 H 0.04 0.60 8.06 -51.93 -0.42 0.18 16 43 H 0.07 0.97 7.44 -51.93 -0.39 0.59 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.05 0.61 7.74 -51.93 -0.40 0.21 16 46 H 0.07 0.36 6.75 -51.93 -0.35 0.01 16 47 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 48 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.37 2.20 7.30 45.56 0.33 2.54 16 50 H 0.39 3.62 8.72 45.56 0.40 4.02 16 51 H 0.39 3.07 9.08 45.56 0.41 3.48 16 LS Contribution 403.50 15.07 6.08 6.08 Total: -1.00 -33.66 403.50 -9.07 -42.73 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -6.77 Total: 11.60 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -0.15 Total: -8.85 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.07 Total: -37.86 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -3.29 Total: -30.30 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.66 -9.07 -42.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491368.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -210.904 kcal (2) G-P(sol) polarization free energy of solvation -33.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -244.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -253.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds