Wall clock time and date at job start Tue Mar 31 2020 17:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47387 * 2 1 4 4 C 1.53004 * 109.46613 * 120.00034 * 2 1 3 5 5 C 1.52999 * 109.46550 * 184.99674 * 4 2 1 6 6 C 1.50703 * 109.46735 * 179.97438 * 5 4 2 7 7 H 1.07994 * 120.00082 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99866 * 179.97438 * 6 5 4 9 9 N 1.31519 * 120.00214 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00027 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47018 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47226 * 120.00050 * 10 8 6 13 13 H 1.48502 * 109.47126 * 240.00082 * 10 8 6 14 14 N 1.46900 * 109.46763 * 239.99819 * 2 1 3 15 15 C 1.46895 * 111.00137 * 85.00797 * 14 2 1 16 16 C 1.52997 * 109.47067 * 179.97438 * 15 14 2 17 17 O 1.42905 * 109.47611 * 64.99515 * 16 15 14 18 18 C 1.42896 * 113.99926 * 179.97438 * 17 16 15 19 19 H 1.09001 * 109.48884 * 54.97659 * 18 17 16 20 20 O 1.42900 * 109.48539 * 294.94229 * 18 17 16 21 21 C 1.42909 * 114.09748 * 301.18162 * 20 18 17 22 22 H 1.08993 * 109.48060 * 58.83000 * 21 20 18 23 23 C 1.52997 * 109.47866 * 178.85771 * 21 20 18 24 24 C 1.53093 * 109.40993 * 298.83922 * 21 20 18 25 25 H 1.08998 * 109.51871 * 177.51813 * 24 21 20 26 26 O 1.42899 * 109.52593 * 297.63778 * 24 21 20 27 27 C 1.53178 * 109.16816 * 57.61012 * 24 21 20 28 28 H 1.09004 * 109.53659 * 62.88276 * 27 24 21 29 29 O 1.42894 * 109.54541 * 183.14943 * 27 24 21 30 30 C 1.53095 * 109.47545 * 175.00167 * 18 17 16 31 31 H 1.09005 * 109.52277 * 182.34901 * 30 18 17 32 32 O 1.42905 * 109.52179 * 302.46765 * 30 18 17 33 33 H 1.08993 * 109.47387 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47074 * 300.00697 * 1 2 3 35 35 H 1.09002 * 109.46713 * 59.99760 * 1 2 3 36 36 H 1.08993 * 109.47099 * 304.99695 * 4 2 1 37 37 H 1.08997 * 109.47444 * 64.99840 * 4 2 1 38 38 H 1.08993 * 109.47437 * 299.99814 * 5 4 2 39 39 H 1.09005 * 109.47381 * 60.00195 * 5 4 2 40 40 H 0.96997 * 120.00058 * 180.02562 * 9 8 6 41 41 H 1.00906 * 110.99685 * 208.95469 * 14 2 1 42 42 H 1.08999 * 109.47634 * 59.99440 * 15 14 2 43 43 H 1.09004 * 109.46581 * 299.99553 * 15 14 2 44 44 H 1.09001 * 109.47257 * 304.99049 * 16 15 14 45 45 H 1.09001 * 109.47052 * 184.99767 * 16 15 14 46 46 H 1.08998 * 109.47245 * 59.99661 * 23 21 20 47 47 H 1.09005 * 109.46806 * 179.97438 * 23 21 20 48 48 H 1.08999 * 109.47142 * 299.99643 * 23 21 20 49 49 H 0.96704 * 114.00283 * 300.01259 * 26 24 21 50 50 H 0.96703 * 113.99887 * 179.55896 * 29 27 24 51 51 H 0.96691 * 114.00079 * 300.00005 * 32 30 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5648 -0.6134 1.3137 6 6 4.0670 -1.3233 2.5445 7 1 3.3685 -1.8037 3.2136 8 6 5.4183 -1.3603 2.8159 9 7 6.2689 -0.7757 2.0008 10 14 6.0409 -2.2409 4.3411 11 1 4.8909 -2.8123 5.0869 12 1 6.9626 -3.3340 3.9401 13 1 6.7642 -1.2768 5.2087 14 7 2.0196 -0.6925 -1.1994 15 6 2.0826 0.2225 -2.3469 16 6 2.5963 -0.5331 -3.5741 17 8 1.6513 -1.5392 -3.9442 18 6 2.0369 -2.3067 -5.0862 19 1 3.0228 -2.7397 -4.9173 20 8 2.0786 -1.4608 -6.2371 21 6 0.8371 -0.8186 -6.5347 22 1 0.5275 -0.2136 -5.6827 23 6 1.0079 0.0782 -7.7624 24 6 -0.2285 -1.8797 -6.8218 25 1 -1.1864 -1.3934 -7.0057 26 8 0.1505 -2.6382 -7.9721 27 6 -0.3508 -2.8101 -5.6111 28 1 -0.6884 -2.2398 -4.7457 29 8 -1.2906 -3.8475 -5.8984 30 6 1.0194 -3.4275 -5.3151 31 1 1.3349 -4.0388 -6.1607 32 8 0.9335 -4.2412 -4.1435 33 1 -0.3634 -1.0276 -0.0005 34 1 -0.3633 0.5139 0.8899 35 1 -0.3633 0.5139 -0.8900 36 1 1.6053 -0.2618 2.1369 37 1 1.7515 -1.7715 1.2057 38 1 3.9994 -1.0729 0.4261 39 1 3.8532 0.4369 1.3574 40 1 7.2196 -0.8021 2.1915 41 1 2.9173 -1.1206 -1.0287 42 1 2.7590 1.0461 -2.1182 43 1 1.0872 0.6163 -2.5525 44 1 3.5521 -1.0012 -3.3388 45 1 2.7273 0.1643 -4.4015 46 1 1.3172 -0.5271 -8.6144 47 1 0.0607 0.5676 -7.9895 48 1 1.7674 0.8329 -7.5581 49 1 0.2507 -2.1101 -8.7759 50 1 -1.4129 -4.4786 -5.1760 51 1 1.7682 -4.6607 -3.8940 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172491368.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:56 Heat of formation + Delta-G solvation = -282.413244 kcal Electronic energy + Delta-G solvation = -30870.107565 eV Core-core repulsion = 26574.950375 eV Total energy + Delta-G solvation = -4295.157189 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 333.208 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.63132 -39.12183 -38.28782 -38.17590 -36.79648 -36.40389 -35.26764 -33.46690 -32.53779 -31.63326 -30.97666 -28.73577 -27.66146 -26.94430 -24.69829 -23.58761 -23.31917 -22.72994 -21.27928 -21.05853 -19.14869 -18.85226 -18.54499 -18.38620 -18.06029 -17.19949 -16.83100 -16.68387 -16.54504 -16.39421 -16.18829 -15.54691 -15.23685 -14.97848 -14.78474 -14.67501 -14.40780 -14.17089 -13.97578 -13.74827 -13.55603 -13.34914 -13.18123 -13.12040 -13.06054 -12.93662 -12.86023 -12.71354 -12.48671 -12.33017 -12.16830 -11.88280 -11.83620 -11.60215 -11.54471 -11.29130 -11.19877 -11.09064 -10.94068 -10.84665 -10.55406 -10.38868 -9.24920 -8.21005 -6.30892 1.38545 1.39452 1.52387 2.27024 2.40240 2.58728 2.97821 3.06809 3.12063 3.23357 3.28261 3.54237 3.59137 3.82237 4.03406 4.08438 4.11231 4.19366 4.22866 4.25616 4.27280 4.36135 4.44937 4.46910 4.57143 4.63210 4.65968 4.75717 4.78617 4.82115 4.84876 4.95865 5.01641 5.07004 5.09164 5.20524 5.22937 5.45496 5.54120 5.63791 5.71507 5.84218 6.21122 6.25441 6.29663 6.48719 6.61826 6.67777 6.79252 6.85449 7.38107 8.90447 Molecular weight = 333.21amu Principal moments of inertia in cm(-1) A = 0.016800 B = 0.002455 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.284824 B =11400.644212 C =11501.502942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.087 3.913 3 H 0.030 0.970 4 C -0.101 4.101 5 C 0.029 3.971 6 C -0.541 4.541 7 H 0.056 0.944 8 C 0.002 3.998 9 N -0.931 5.931 10 Si 0.961 3.039 11 H -0.264 1.264 12 H -0.278 1.278 13 H -0.279 1.279 14 N -0.680 5.680 15 C 0.063 3.937 16 C 0.072 3.928 17 O -0.377 6.377 18 C 0.212 3.788 19 H 0.107 0.893 20 O -0.387 6.387 21 C 0.053 3.947 22 H 0.073 0.927 23 C -0.146 4.146 24 C 0.091 3.909 25 H 0.088 0.912 26 O -0.562 6.562 27 C 0.121 3.879 28 H 0.074 0.926 29 O -0.566 6.566 30 C 0.074 3.926 31 H 0.085 0.915 32 O -0.562 6.562 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.000 1.000 39 H -0.015 1.015 40 H 0.263 0.737 41 H 0.336 0.664 42 H 0.042 0.958 43 H 0.083 0.917 44 H 0.043 0.957 45 H 0.070 0.930 46 H 0.075 0.925 47 H 0.096 0.904 48 H 0.070 0.930 49 H 0.391 0.609 50 H 0.393 0.607 51 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.803 0.579 -21.715 25.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.023 4.023 3 H 0.048 0.952 4 C -0.139 4.139 5 C -0.008 4.008 6 C -0.579 4.579 7 H 0.074 0.926 8 C -0.196 4.196 9 N -0.571 5.571 10 Si 0.786 3.214 11 H -0.188 1.188 12 H -0.203 1.203 13 H -0.204 1.204 14 N -0.313 5.313 15 C -0.066 4.066 16 C -0.005 4.005 17 O -0.297 6.297 18 C 0.116 3.884 19 H 0.124 0.876 20 O -0.309 6.309 21 C -0.004 4.004 22 H 0.091 0.909 23 C -0.203 4.203 24 C 0.031 3.969 25 H 0.106 0.894 26 O -0.371 6.371 27 C 0.061 3.939 28 H 0.092 0.908 29 O -0.374 6.374 30 C 0.014 3.986 31 H 0.102 0.898 32 O -0.371 6.371 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.018 0.982 39 H 0.003 0.997 40 H 0.072 0.928 41 H 0.156 0.844 42 H 0.060 0.940 43 H 0.101 0.899 44 H 0.061 0.939 45 H 0.088 0.912 46 H 0.094 0.906 47 H 0.115 0.885 48 H 0.089 0.911 49 H 0.242 0.758 50 H 0.243 0.757 51 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -13.938 0.384 -22.077 26.112 hybrid contribution 2.371 0.131 1.385 2.749 sum -11.567 0.515 -20.693 23.712 Atomic orbital electron populations 1.21675 0.93434 1.01846 1.01314 1.21533 0.96274 0.94955 0.89507 0.95224 1.21632 0.96236 0.99711 0.96302 1.18989 0.91994 0.94452 0.95391 1.21712 0.92496 1.34410 1.09261 0.92565 1.25920 0.97363 0.96355 0.99976 1.70084 1.02693 1.45426 1.38910 0.85453 0.78389 0.78315 0.79224 1.18815 1.20348 1.20432 1.60639 1.33563 1.32759 1.04380 1.22011 1.01480 0.93408 0.89724 1.22480 0.91460 0.90402 0.96111 1.88155 1.46584 1.49294 1.45714 1.24285 0.99030 0.87936 0.77115 0.87597 1.88098 1.33893 1.62811 1.46064 1.22929 0.84009 0.93388 1.00122 0.90917 1.21819 1.04289 0.98837 0.95325 1.22458 0.97866 0.90913 0.85617 0.89402 1.86564 1.91979 1.38737 1.19801 1.21835 0.86924 0.89045 0.96065 0.90782 1.86442 1.62492 1.42193 1.46248 1.22926 0.96368 0.90691 0.88634 0.89761 1.86441 1.39492 1.65870 1.45272 0.92822 0.91998 0.92386 0.92589 0.92935 0.98206 0.99695 0.92847 0.84443 0.93996 0.89888 0.93857 0.91214 0.90618 0.88506 0.91143 0.75850 0.75721 0.75224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.55 9.41 71.98 0.68 -2.87 16 2 C 0.09 2.99 2.65 44.92 0.12 3.11 16 3 H 0.03 1.05 7.80 -2.39 -0.02 1.03 16 4 C -0.10 -4.19 4.74 30.60 0.15 -4.04 16 5 C 0.03 1.50 4.80 29.85 0.14 1.64 16 6 C -0.54 -30.80 9.11 25.60 0.23 -30.56 16 7 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 8 C 0.00 0.09 5.46 84.65 0.46 0.56 16 9 N -0.93 -55.97 13.29 21.45 0.28 -55.68 16 10 Si 0.96 44.33 29.54 68.60 2.03 46.35 16 11 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 12 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 13 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 14 N -0.68 -22.69 6.26 -491.58 -3.08 -25.76 16 15 C 0.06 1.72 5.87 86.30 0.51 2.23 16 16 C 0.07 1.78 6.08 71.98 0.44 2.21 16 17 O -0.38 -9.55 8.62 -121.47 -1.05 -10.60 16 18 C 0.21 4.67 3.31 72.01 0.24 4.91 16 19 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 20 O -0.39 -8.10 9.65 -122.39 -1.18 -9.28 16 21 C 0.05 0.87 2.88 30.62 0.09 0.96 16 22 H 0.07 1.29 7.56 -2.39 -0.02 1.27 16 23 C -0.15 -1.47 9.21 71.98 0.66 -0.80 16 24 C 0.09 1.61 3.06 30.68 0.09 1.70 16 25 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 26 O -0.56 -10.27 12.52 -129.40 -1.62 -11.89 16 27 C 0.12 2.65 2.88 30.71 0.09 2.74 16 28 H 0.07 1.78 7.82 -2.39 -0.02 1.76 16 29 O -0.57 -13.13 13.17 -129.98 -1.71 -14.84 16 30 C 0.07 1.60 2.96 30.68 0.09 1.69 16 31 H 0.08 1.90 7.84 -2.38 -0.02 1.88 16 32 O -0.56 -12.49 12.79 -130.11 -1.66 -14.15 16 33 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.06 1.47 7.45 -2.39 -0.02 1.46 16 36 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.00 -0.01 6.43 -2.39 -0.02 -0.03 16 39 H -0.02 -0.87 8.14 -2.38 -0.02 -0.89 16 40 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 41 H 0.34 12.78 6.47 -89.69 -0.58 12.20 16 42 H 0.04 1.16 8.06 -2.39 -0.02 1.14 16 43 H 0.08 2.10 7.44 -2.39 -0.02 2.08 16 44 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.07 1.50 7.74 -2.39 -0.02 1.48 16 46 H 0.07 0.64 6.75 -2.39 -0.02 0.62 16 47 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 48 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.39 3.82 7.30 -74.05 -0.54 3.28 16 50 H 0.39 7.31 8.72 -74.06 -0.65 6.66 16 51 H 0.40 6.28 9.08 -74.06 -0.67 5.61 16 Total: -1.00 -71.31 403.50 -5.49 -76.79 By element: Atomic # 1 Polarization: 37.07 SS G_CDS: -1.48 Total: 35.59 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: 3.99 Total: -16.53 kcal Atomic # 7 Polarization: -78.66 SS G_CDS: -2.79 Total: -81.45 kcal Atomic # 8 Polarization: -53.54 SS G_CDS: -7.23 Total: -60.76 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -71.31 -5.49 -76.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491368.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -205.618 kcal (2) G-P(sol) polarization free energy of solvation -71.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -276.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -282.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds