Wall clock time and date at job start Tue Mar 31 2020 18:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00229 * 2 1 4 4 H 1.48502 * 109.47038 * 270.00050 * 3 2 1 5 5 H 1.48502 * 109.47059 * 30.00073 * 3 2 1 6 6 H 1.48497 * 109.47141 * 149.99968 * 3 2 1 7 7 C 1.37884 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99308 * 0.02562 * 7 2 1 9 9 C 1.50690 * 120.00208 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47290 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47099 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.46750 * 180.02562 * 11 10 9 13 13 C 1.34780 * 119.99570 * 180.02562 * 12 11 10 14 14 O 1.21283 * 120.00137 * 0.02562 * 13 12 11 15 15 C 1.50696 * 119.99920 * 180.02562 * 13 12 11 16 16 N 1.46896 * 109.47204 * 180.02562 * 15 13 12 17 17 C 1.46955 * 111.00233 * 189.99950 * 16 15 13 18 18 C 1.53049 * 109.36962 * 176.80960 * 17 16 15 19 19 N 1.46956 * 109.37889 * 58.38792 * 18 17 16 20 20 C 1.38409 * 110.99759 * 176.82522 * 19 18 17 21 21 N 1.32493 * 119.22023 * 359.72915 * 20 19 18 22 22 C 1.32272 * 120.74221 * 179.71774 * 21 20 19 23 23 C 1.38607 * 119.19729 * 0.54856 * 22 21 20 24 24 C 1.38605 * 118.55685 * 359.72757 * 23 22 21 25 25 N 1.32272 * 119.19981 * 0.02562 * 24 23 22 26 26 C 1.46957 * 110.88202 * 300.71439 * 19 18 17 27 27 C 1.46955 * 111.00423 * 66.19888 * 16 15 13 28 28 H 0.97005 * 119.99730 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.46986 * 59.99568 * 9 7 2 30 30 H 1.09007 * 109.46982 * 299.99947 * 9 7 2 31 31 H 1.09002 * 109.46819 * 60.00301 * 10 9 7 32 32 H 1.08998 * 109.47198 * 299.99903 * 10 9 7 33 33 H 1.08998 * 109.47258 * 60.00123 * 11 10 9 34 34 H 1.08998 * 109.47117 * 300.00076 * 11 10 9 35 35 H 0.96997 * 120.00571 * 359.97438 * 12 11 10 36 36 H 1.08998 * 109.47078 * 59.99811 * 15 13 12 37 37 H 1.09007 * 109.46970 * 299.99899 * 15 13 12 38 38 H 1.09005 * 109.49150 * 56.83886 * 17 16 15 39 39 H 1.09006 * 109.48712 * 296.78139 * 17 16 15 40 40 H 1.09002 * 109.49200 * 178.36943 * 18 17 16 41 41 H 1.09002 * 109.48985 * 298.41362 * 18 17 16 42 42 H 1.08002 * 120.40417 * 180.25886 * 22 21 20 43 43 H 1.08003 * 120.72218 * 179.70632 * 23 22 21 44 44 H 1.07999 * 120.40058 * 179.97438 * 24 23 22 45 45 H 1.08997 * 109.47347 * 299.31758 * 26 19 18 46 46 H 1.09002 * 109.50396 * 179.27890 * 26 19 18 47 47 H 1.09002 * 109.48806 * 303.15815 * 27 16 15 48 48 H 1.09003 * 109.48675 * 63.21848 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0011 10 6 4.0213 -2.6367 0.0023 11 6 5.5514 -2.6367 0.0022 12 7 6.0396 -4.0180 0.0027 13 6 7.3647 -4.2643 0.0033 14 8 8.1529 -3.3425 0.0039 15 6 7.8670 -5.6851 0.0032 16 7 9.3360 -5.6851 0.0045 17 6 9.8628 -7.0362 -0.2337 18 6 11.3907 -6.9801 -0.3040 19 7 11.9166 -6.4267 0.9516 20 6 13.3007 -6.4266 0.9523 21 7 13.9480 -6.8981 -0.1032 22 6 15.2703 -6.9072 -0.1369 23 6 15.9778 -6.4266 0.9538 24 6 15.2692 -5.9460 2.0437 25 7 13.9469 -5.9606 2.0111 26 6 11.3894 -5.0758 1.1901 27 6 9.8616 -5.1320 1.2604 28 1 -0.4850 0.8401 -0.0004 29 1 3.8744 -0.6801 0.8911 30 1 3.8751 -0.6806 -0.8889 31 1 3.6584 -3.1510 -0.8876 32 1 3.6577 -3.1499 0.8925 33 1 5.9148 -2.1222 0.8918 34 1 5.9147 -2.1236 -0.8882 35 1 5.4093 -4.7553 0.0034 36 1 7.5041 -6.1987 -0.8870 37 1 7.5032 -6.1991 0.8930 38 1 9.4693 -7.4192 -1.1753 39 1 9.5601 -7.6935 0.5815 40 1 11.7851 -7.9854 -0.4518 41 1 11.6933 -6.3447 -1.1364 42 1 15.7924 -7.2890 -1.0019 43 1 17.0578 -6.4270 0.9545 44 1 15.7903 -5.5649 2.9095 45 1 11.6921 -4.4185 0.3750 46 1 11.7830 -4.6925 2.1316 47 1 9.4672 -4.1266 1.4082 48 1 9.5589 -5.7676 2.0926 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176984995.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:35 Heat of formation + Delta-G solvation = 40.206761 kcal Electronic energy + Delta-G solvation = -27475.295945 eV Core-core repulsion = 23566.023031 eV Total energy + Delta-G solvation = -3909.272914 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.64609 -40.05968 -38.84462 -36.04063 -35.29150 -34.18199 -33.32712 -31.84931 -31.40736 -31.29516 -29.11355 -27.15342 -25.40483 -25.13842 -23.55256 -23.22400 -22.54144 -20.76659 -20.33145 -19.85346 -18.36198 -17.86916 -17.07373 -16.72857 -16.35715 -16.02915 -15.94875 -15.62886 -15.16311 -15.08293 -14.87728 -14.57925 -14.47137 -14.22030 -14.02784 -13.94479 -13.66039 -13.11589 -12.71463 -12.49463 -12.29080 -11.97257 -11.89312 -11.67102 -11.44641 -11.39625 -11.32033 -11.21200 -11.08404 -10.88810 -10.60578 -10.18336 -9.95599 -9.77958 -9.60642 -9.51458 -9.23716 -8.87331 -8.81929 -8.57725 -8.56258 -6.07204 -4.05946 0.52742 0.69624 2.70817 2.74348 3.06904 3.30807 3.35730 3.38431 3.42656 3.70727 3.75595 4.17439 4.26069 4.43751 4.51134 4.62411 4.69501 4.72605 4.80359 4.89465 4.96324 4.99103 5.11197 5.15414 5.24629 5.26986 5.34163 5.46779 5.55471 5.57536 5.64216 5.65302 5.72090 5.85570 6.00820 6.19414 6.31779 6.35260 6.43727 6.57278 6.70377 6.73002 6.78768 6.84449 7.21859 7.35290 7.63881 7.73475 7.75977 8.34861 8.49437 8.96591 9.55116 11.05997 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.029919 B = 0.001650 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.629085 B =16961.515190 C =17554.158409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.116 3.884 12 N -0.728 5.728 13 C 0.509 3.491 14 O -0.528 6.528 15 C 0.036 3.964 16 N -0.524 5.524 17 C 0.054 3.946 18 C 0.075 3.925 19 N -0.464 5.464 20 C 0.496 3.504 21 N -0.552 5.552 22 C 0.174 3.826 23 C -0.266 4.266 24 C 0.175 3.825 25 N -0.532 5.532 26 C 0.075 3.925 27 C 0.052 3.948 28 H 0.263 0.737 29 H 0.018 0.982 30 H 0.014 0.986 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.399 0.601 36 H 0.106 0.894 37 H 0.066 0.934 38 H 0.089 0.911 39 H 0.045 0.955 40 H 0.092 0.908 41 H 0.064 0.936 42 H 0.168 0.832 43 H 0.147 0.853 44 H 0.170 0.830 45 H 0.056 0.944 46 H 0.098 0.902 47 H 0.109 0.891 48 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.505 -18.491 1.319 36.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C -0.007 4.007 12 N -0.379 5.379 13 C 0.294 3.706 14 O -0.405 6.405 15 C -0.095 4.095 16 N -0.249 5.249 17 C -0.075 4.075 18 C -0.053 4.053 19 N -0.183 5.183 20 C 0.141 3.859 21 N -0.272 5.272 22 C 0.007 3.993 23 C -0.290 4.290 24 C 0.007 3.993 25 N -0.250 5.250 26 C -0.051 4.051 27 C -0.076 4.076 28 H 0.073 0.927 29 H 0.037 0.963 30 H 0.033 0.967 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.233 0.767 36 H 0.124 0.876 37 H 0.083 0.917 38 H 0.108 0.892 39 H 0.064 0.936 40 H 0.110 0.890 41 H 0.083 0.917 42 H 0.185 0.815 43 H 0.164 0.836 44 H 0.187 0.813 45 H 0.074 0.926 46 H 0.116 0.884 47 H 0.127 0.873 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 30.808 -17.677 1.327 35.544 hybrid contribution 0.942 0.315 0.105 0.999 sum 31.750 -17.362 1.431 36.215 Atomic orbital electron populations 1.69912 1.06319 1.26958 1.50974 1.25027 0.94743 0.99231 0.94446 0.86778 0.80405 0.83533 0.78599 1.20242 1.21357 1.18903 1.21099 0.89327 0.94508 1.51141 0.91014 1.19502 0.97260 0.91510 0.96652 1.21704 0.90682 1.01022 1.01714 1.21630 0.96064 0.81125 1.01878 1.46159 1.06624 1.10017 1.75144 1.20432 0.82509 0.91054 0.76650 1.90667 1.55050 1.46082 1.48657 1.21965 0.88980 0.95113 1.03411 1.61825 1.05827 1.21535 1.35695 1.22295 0.94054 0.89250 1.01854 1.22104 0.93410 1.01299 0.88438 1.58629 1.00896 1.23605 1.35186 1.21086 0.91014 0.88843 0.84996 1.68390 1.10767 1.21607 1.26455 1.23081 0.88964 0.90089 0.97209 1.22741 1.02963 1.06001 0.97253 1.23123 0.88754 0.90135 0.97292 1.68041 1.10374 1.20104 1.26454 1.22262 0.94907 0.85060 1.02908 1.22406 0.93143 1.02522 0.89543 0.92695 0.96333 0.96745 0.92117 0.92117 0.91866 0.91806 0.76720 0.87625 0.91652 0.89224 0.93633 0.88971 0.91746 0.81492 0.83562 0.81299 0.92552 0.88403 0.87323 0.93957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.52 -14.67 9.66 -34.44 -0.33 -15.00 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 9 C -0.01 -0.26 4.04 -27.89 -0.11 -0.38 16 10 C -0.11 -2.07 5.27 -26.73 -0.14 -2.21 16 11 C 0.12 1.87 5.67 -4.04 -0.02 1.84 16 12 N -0.73 -9.33 5.56 -60.29 -0.33 -9.66 16 13 C 0.51 6.75 7.53 -10.99 -0.08 6.67 16 14 O -0.53 -9.08 14.34 5.56 0.08 -9.00 16 15 C 0.04 0.34 5.45 -4.98 -0.03 0.32 16 16 N -0.52 -5.52 4.44 -235.91 -1.05 -6.57 16 17 C 0.05 0.45 5.61 -3.77 -0.02 0.42 16 18 C 0.07 0.69 4.77 -3.77 -0.02 0.68 16 19 N -0.46 -4.96 4.77 -175.23 -0.84 -5.80 16 20 C 0.50 5.43 7.17 -322.79 -2.32 3.11 16 21 N -0.55 -5.41 8.69 -13.93 -0.12 -5.53 16 22 C 0.17 1.15 11.30 -17.23 -0.19 0.96 16 23 C -0.27 -1.42 10.16 -39.31 -0.40 -1.82 16 24 C 0.17 1.21 11.30 -17.23 -0.19 1.01 16 25 N -0.53 -5.52 9.72 -13.93 -0.14 -5.65 16 26 C 0.07 0.81 5.46 -3.77 -0.02 0.79 16 27 C 0.05 0.57 5.26 -3.77 -0.02 0.55 16 28 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 30 H 0.01 0.33 7.57 -51.92 -0.39 -0.06 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.40 3.99 8.47 -40.82 -0.35 3.64 16 36 H 0.11 0.78 8.03 -51.93 -0.42 0.36 16 37 H 0.07 0.51 8.12 -51.92 -0.42 0.09 16 38 H 0.09 0.59 8.07 -51.93 -0.42 0.18 16 39 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.09 0.80 7.80 -51.93 -0.40 0.40 16 41 H 0.06 0.67 8.04 -51.93 -0.42 0.26 16 42 H 0.17 0.55 8.06 -52.49 -0.42 0.13 16 43 H 0.15 0.31 8.06 -52.48 -0.42 -0.11 16 44 H 0.17 0.61 8.06 -52.49 -0.42 0.18 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.10 1.06 7.64 -51.93 -0.40 0.66 16 47 H 0.11 1.42 5.85 -51.93 -0.30 1.12 16 48 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 388.08 15.07 5.85 5.85 Total: -1.00 -35.46 388.08 -12.15 -47.61 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -7.71 Total: -0.18 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -4.00 Total: -1.21 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: -1.70 Total: -60.11 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.08 Total: -9.00 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.46 -12.15 -47.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176984995.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.814 kcal (2) G-P(sol) polarization free energy of solvation -35.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds