Wall clock time and date at job start Tue Mar 31 2020 18:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00229 * 2 1 4 4 H 1.48502 * 109.47038 * 270.00050 * 3 2 1 5 5 H 1.48502 * 109.47059 * 30.00073 * 3 2 1 6 6 H 1.48497 * 109.47141 * 149.99968 * 3 2 1 7 7 C 1.37884 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99308 * 0.02562 * 7 2 1 9 9 C 1.50690 * 120.00208 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47290 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47099 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.46750 * 180.02562 * 11 10 9 13 13 C 1.34780 * 119.99570 * 180.02562 * 12 11 10 14 14 O 1.21283 * 120.00137 * 0.02562 * 13 12 11 15 15 C 1.50696 * 119.99920 * 180.02562 * 13 12 11 16 16 N 1.46896 * 109.47204 * 180.02562 * 15 13 12 17 17 C 1.46955 * 111.00233 * 189.99950 * 16 15 13 18 18 C 1.53049 * 109.36962 * 176.80960 * 17 16 15 19 19 N 1.46956 * 109.37889 * 58.38792 * 18 17 16 20 20 C 1.38409 * 110.99759 * 176.82522 * 19 18 17 21 21 N 1.32493 * 119.22023 * 359.72915 * 20 19 18 22 22 C 1.32272 * 120.74221 * 179.71774 * 21 20 19 23 23 C 1.38607 * 119.19729 * 0.54856 * 22 21 20 24 24 C 1.38605 * 118.55685 * 359.72757 * 23 22 21 25 25 N 1.32272 * 119.19981 * 0.02562 * 24 23 22 26 26 C 1.46957 * 110.88202 * 300.71439 * 19 18 17 27 27 C 1.46955 * 111.00423 * 66.19888 * 16 15 13 28 28 H 0.97005 * 119.99730 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.46986 * 59.99568 * 9 7 2 30 30 H 1.09007 * 109.46982 * 299.99947 * 9 7 2 31 31 H 1.09002 * 109.46819 * 60.00301 * 10 9 7 32 32 H 1.08998 * 109.47198 * 299.99903 * 10 9 7 33 33 H 1.08998 * 109.47258 * 60.00123 * 11 10 9 34 34 H 1.08998 * 109.47117 * 300.00076 * 11 10 9 35 35 H 0.96997 * 120.00571 * 359.97438 * 12 11 10 36 36 H 1.08998 * 109.47078 * 59.99811 * 15 13 12 37 37 H 1.09007 * 109.46970 * 299.99899 * 15 13 12 38 38 H 1.09005 * 109.49150 * 56.83886 * 17 16 15 39 39 H 1.09006 * 109.48712 * 296.78139 * 17 16 15 40 40 H 1.09002 * 109.49200 * 178.36943 * 18 17 16 41 41 H 1.09002 * 109.48985 * 298.41362 * 18 17 16 42 42 H 1.08002 * 120.40417 * 180.25886 * 22 21 20 43 43 H 1.08003 * 120.72218 * 179.70632 * 23 22 21 44 44 H 1.07999 * 120.40058 * 179.97438 * 24 23 22 45 45 H 1.08997 * 109.47347 * 299.31758 * 26 19 18 46 46 H 1.09002 * 109.50396 * 179.27890 * 26 19 18 47 47 H 1.09002 * 109.48806 * 303.15815 * 27 16 15 48 48 H 1.09003 * 109.48675 * 63.21848 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0011 10 6 4.0213 -2.6367 0.0023 11 6 5.5514 -2.6367 0.0022 12 7 6.0396 -4.0180 0.0027 13 6 7.3647 -4.2643 0.0033 14 8 8.1529 -3.3425 0.0039 15 6 7.8670 -5.6851 0.0032 16 7 9.3360 -5.6851 0.0045 17 6 9.8628 -7.0362 -0.2337 18 6 11.3907 -6.9801 -0.3040 19 7 11.9166 -6.4267 0.9516 20 6 13.3007 -6.4266 0.9523 21 7 13.9480 -6.8981 -0.1032 22 6 15.2703 -6.9072 -0.1369 23 6 15.9778 -6.4266 0.9538 24 6 15.2692 -5.9460 2.0437 25 7 13.9469 -5.9606 2.0111 26 6 11.3894 -5.0758 1.1901 27 6 9.8616 -5.1320 1.2604 28 1 -0.4850 0.8401 -0.0004 29 1 3.8744 -0.6801 0.8911 30 1 3.8751 -0.6806 -0.8889 31 1 3.6584 -3.1510 -0.8876 32 1 3.6577 -3.1499 0.8925 33 1 5.9148 -2.1222 0.8918 34 1 5.9147 -2.1236 -0.8882 35 1 5.4093 -4.7553 0.0034 36 1 7.5041 -6.1987 -0.8870 37 1 7.5032 -6.1991 0.8930 38 1 9.4693 -7.4192 -1.1753 39 1 9.5601 -7.6935 0.5815 40 1 11.7851 -7.9854 -0.4518 41 1 11.6933 -6.3447 -1.1364 42 1 15.7924 -7.2890 -1.0019 43 1 17.0578 -6.4270 0.9545 44 1 15.7903 -5.5649 2.9095 45 1 11.6921 -4.4185 0.3750 46 1 11.7830 -4.6925 2.1316 47 1 9.4672 -4.1266 1.4082 48 1 9.5589 -5.7676 2.0926 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176984995.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:34 Heat of formation + Delta-G solvation = 14.373287 kcal Electronic energy + Delta-G solvation = -27476.416168 eV Core-core repulsion = 23566.023031 eV Total energy + Delta-G solvation = -3910.393137 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.26322 -40.99145 -39.70611 -37.11850 -36.38732 -35.11864 -34.78082 -33.34434 -32.32110 -32.04306 -30.11240 -28.60131 -26.23439 -25.89376 -24.40980 -24.20354 -23.64952 -22.21944 -21.21251 -21.02041 -19.03205 -18.95401 -18.49724 -17.87322 -17.21462 -16.93659 -16.69205 -16.49070 -16.29355 -16.08973 -15.83136 -15.64439 -15.41800 -15.27374 -15.10849 -14.77947 -14.60830 -14.35028 -14.06276 -13.82197 -13.70450 -13.15626 -12.91628 -12.71751 -12.68357 -12.42226 -12.25171 -12.10238 -11.95873 -11.90133 -11.84976 -11.76109 -11.57772 -11.32635 -11.22927 -10.76310 -10.72476 -10.19237 -10.02572 -9.50479 -9.33646 -8.29551 -6.33216 -0.04396 0.17418 1.36419 1.38125 1.49783 1.70109 2.07312 2.13097 2.36064 2.77667 2.91770 3.06321 3.19109 3.57552 3.75722 3.80431 3.84829 4.00837 4.10427 4.14567 4.17195 4.21941 4.27490 4.31616 4.35918 4.40927 4.48785 4.52298 4.55188 4.75209 4.79702 4.83838 4.90069 4.90634 4.94339 4.97308 5.05029 5.29665 5.42916 5.48252 5.54571 5.56756 5.65451 5.68217 5.85559 5.99267 6.24132 6.27576 6.66502 6.75186 7.12891 7.31646 7.34690 8.86779 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.029919 B = 0.001650 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.629085 B =16961.515190 C =17554.158409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.006 3.994 3 Si 0.946 3.054 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.249 1.249 7 C -0.531 4.531 8 H 0.038 0.962 9 C -0.013 4.013 10 C -0.100 4.100 11 C 0.129 3.871 12 N -0.718 5.718 13 C 0.506 3.494 14 O -0.572 6.572 15 C 0.044 3.956 16 N -0.542 5.542 17 C 0.059 3.941 18 C 0.080 3.920 19 N -0.470 5.470 20 C 0.470 3.530 21 N -0.572 5.572 22 C 0.159 3.841 23 C -0.247 4.247 24 C 0.159 3.841 25 N -0.561 5.561 26 C 0.086 3.914 27 C 0.060 3.940 28 H 0.266 0.734 29 H 0.019 0.981 30 H 0.018 0.982 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.415 0.585 36 H 0.135 0.865 37 H 0.090 0.910 38 H 0.112 0.888 39 H 0.054 0.946 40 H 0.097 0.903 41 H 0.046 0.954 42 H 0.200 0.800 43 H 0.185 0.815 44 H 0.199 0.801 45 H 0.033 0.967 46 H 0.092 0.908 47 H 0.085 0.915 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.072 -19.681 1.117 39.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.191 4.191 3 Si 0.770 3.230 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.172 1.172 7 C -0.569 4.569 8 H 0.057 0.943 9 C -0.051 4.051 10 C -0.138 4.138 11 C 0.005 3.995 12 N -0.371 5.371 13 C 0.293 3.707 14 O -0.451 6.451 15 C -0.086 4.086 16 N -0.268 5.268 17 C -0.068 4.068 18 C -0.047 4.047 19 N -0.190 5.190 20 C 0.114 3.886 21 N -0.292 5.292 22 C -0.007 4.007 23 C -0.270 4.270 24 C -0.007 4.007 25 N -0.280 5.280 26 C -0.041 4.041 27 C -0.068 4.068 28 H 0.075 0.925 29 H 0.038 0.962 30 H 0.037 0.963 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.252 0.748 36 H 0.153 0.847 37 H 0.108 0.892 38 H 0.130 0.870 39 H 0.072 0.928 40 H 0.115 0.885 41 H 0.065 0.935 42 H 0.216 0.784 43 H 0.202 0.798 44 H 0.216 0.784 45 H 0.052 0.948 46 H 0.110 0.890 47 H 0.103 0.897 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 33.400 -18.919 1.122 38.403 hybrid contribution 0.237 0.611 0.159 0.675 sum 33.638 -18.308 1.281 38.318 Atomic orbital electron populations 1.70056 1.08182 1.28096 1.52695 1.25967 0.95573 1.03360 0.94237 0.85717 0.79509 0.78637 0.79159 1.19290 1.20995 1.17241 1.21477 0.91924 0.93277 1.50221 0.94328 1.19473 0.94067 0.94872 0.96695 1.21475 0.92146 0.97952 1.02204 1.21229 0.94208 0.82986 1.01049 1.45974 1.07147 1.09154 1.74872 1.21151 0.81921 0.92380 0.75239 1.90661 1.56068 1.47808 1.50527 1.21999 0.88309 0.92417 1.05888 1.61771 1.06635 1.23028 1.35335 1.22339 0.93128 0.88107 1.03239 1.22065 0.94208 1.00940 0.87451 1.58678 1.01485 1.23004 1.35854 1.21203 0.91193 0.90379 0.85798 1.68385 1.12434 1.22096 1.26279 1.23755 0.88200 0.89901 0.98807 1.23156 1.04729 1.03348 0.95756 1.23761 0.87932 0.90058 0.98967 1.68027 1.12223 1.20962 1.26801 1.22043 0.95012 0.85383 1.01620 1.22210 0.92924 1.01367 0.90281 0.92526 0.96223 0.96338 0.91640 0.91667 0.92758 0.92759 0.74804 0.84715 0.89234 0.87024 0.92779 0.88462 0.93523 0.78370 0.79755 0.78448 0.94818 0.89013 0.89716 0.93356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.32 13.96 21.45 0.30 -59.02 16 2 C 0.01 0.32 5.47 84.66 0.46 0.79 16 3 Si 0.95 44.56 27.47 68.60 1.88 46.44 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.25 -10.99 6.54 99.48 0.65 -10.34 16 7 C -0.53 -30.12 9.66 25.60 0.25 -29.87 16 8 H 0.04 2.37 7.99 -2.91 -0.02 2.35 16 9 C -0.01 -0.60 4.04 29.84 0.12 -0.48 16 10 C -0.10 -3.54 5.27 30.59 0.16 -3.38 16 11 C 0.13 4.02 5.67 86.38 0.49 4.51 16 12 N -0.72 -17.15 5.56 -463.05 -2.57 -19.73 16 13 C 0.51 12.76 7.53 87.66 0.66 13.42 16 14 O -0.57 -19.66 14.34 -3.04 -0.04 -19.71 16 15 C 0.04 0.73 5.45 85.56 0.47 1.19 16 16 N -0.54 -10.79 4.44 -900.29 -4.00 -14.80 16 17 C 0.06 0.88 5.61 86.31 0.48 1.36 16 18 C 0.08 1.47 4.77 86.31 0.41 1.88 16 19 N -0.47 -10.22 4.77 -708.32 -3.38 -13.60 16 20 C 0.47 10.38 7.17 261.48 1.88 12.26 16 21 N -0.57 -10.94 8.69 -197.98 -1.72 -12.66 16 22 C 0.16 1.83 11.30 84.71 0.96 2.79 16 23 C -0.25 -2.01 10.16 22.45 0.23 -1.78 16 24 C 0.16 1.96 11.30 84.71 0.96 2.92 16 25 N -0.56 -11.63 9.72 -197.98 -1.92 -13.56 16 26 C 0.09 1.98 5.46 86.31 0.47 2.45 16 27 C 0.06 1.34 5.26 86.31 0.45 1.80 16 28 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 29 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 30 H 0.02 0.83 7.57 -2.38 -0.02 0.81 16 31 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.05 1.80 8.14 -2.39 -0.02 1.79 16 35 H 0.42 7.24 8.47 -92.71 -0.79 6.45 16 36 H 0.14 1.46 8.03 -2.39 -0.02 1.45 16 37 H 0.09 1.10 8.12 -2.38 -0.02 1.08 16 38 H 0.11 1.16 8.07 -2.38 -0.02 1.14 16 39 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 40 H 0.10 1.64 7.80 -2.39 -0.02 1.62 16 41 H 0.05 1.00 8.04 -2.39 -0.02 0.98 16 42 H 0.20 0.78 8.06 -2.91 -0.02 0.76 16 43 H 0.19 0.01 8.06 -2.91 -0.02 -0.01 16 44 H 0.20 1.01 8.06 -2.91 -0.02 0.98 16 45 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.09 2.14 7.64 -2.39 -0.02 2.12 16 47 H 0.08 2.30 5.85 -2.39 -0.01 2.29 16 48 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -79.89 388.08 -2.90 -82.79 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.12 Total: 13.98 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: 8.45 Total: 9.85 kcal Atomic # 7 Polarization: -120.05 SS G_CDS: -13.30 Total: -133.36 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.04 Total: -19.71 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.88 Total: 46.44 kcal Total: -79.89 -2.90 -82.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176984995.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.166 kcal (2) G-P(sol) polarization free energy of solvation -79.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds