Wall clock time and date at job start Tue Mar 31 2020 17:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46900 * 109.46869 * 2 1 4 4 C 1.46899 * 111.00230 * 297.01617 * 3 2 1 5 5 C 1.52995 * 109.47099 * 288.25028 * 4 3 2 6 6 C 1.46904 * 111.00231 * 60.97124 * 3 2 1 7 7 C 1.53002 * 109.46643 * 66.04205 * 6 3 2 8 8 C 1.53001 * 109.46684 * 180.02562 * 7 6 3 9 9 N 1.46908 * 109.47136 * 180.02562 * 8 7 6 10 10 C 1.46902 * 111.00113 * 170.00159 * 9 8 7 11 11 C 1.53232 * 109.33814 * 187.25429 * 10 9 8 12 12 N 1.47081 * 108.52488 * 306.17011 * 11 10 9 13 13 S 1.65594 * 120.88188 * 231.19073 * 12 11 10 14 14 O 1.42099 * 106.40559 * 336.45656 * 13 12 11 15 15 O 1.42095 * 106.40355 * 203.53534 * 13 12 11 16 16 C 1.76206 * 107.22112 * 89.99574 * 13 12 11 17 17 H 1.08002 * 119.99661 * 0.02562 * 16 13 12 18 18 C 1.37876 * 119.99952 * 179.72501 * 16 13 12 19 19 N 1.31513 * 119.99922 * 180.27598 * 18 16 13 20 20 Si 1.86798 * 120.00029 * 0.27360 * 18 16 13 21 21 H 1.48499 * 109.47031 * 90.00572 * 20 18 16 22 22 H 1.48501 * 109.47064 * 210.00052 * 20 18 16 23 23 H 1.48497 * 109.47275 * 330.00326 * 20 18 16 24 24 C 1.47080 * 118.23373 * 51.45591 * 12 11 10 25 25 C 1.46905 * 110.99930 * 294.30402 * 9 8 7 26 26 H 1.09001 * 109.47475 * 301.30776 * 1 2 3 27 27 H 1.09007 * 109.47184 * 61.31286 * 1 2 3 28 28 H 1.09004 * 109.47215 * 181.30917 * 1 2 3 29 29 H 1.08996 * 109.47348 * 240.00470 * 2 1 3 30 30 H 1.08999 * 109.47344 * 119.99930 * 2 1 3 31 31 H 1.09001 * 109.46729 * 48.25071 * 4 3 2 32 32 H 1.09002 * 109.47038 * 168.24530 * 4 3 2 33 33 H 1.09000 * 109.47054 * 299.84593 * 5 4 3 34 34 H 1.09001 * 109.47286 * 59.84579 * 5 4 3 35 35 H 1.09009 * 109.47027 * 179.85047 * 5 4 3 36 36 H 1.09004 * 109.47010 * 306.04888 * 6 3 2 37 37 H 1.08996 * 109.47691 * 186.04440 * 6 3 2 38 38 H 1.08997 * 109.47508 * 60.00518 * 7 6 3 39 39 H 1.09005 * 109.47621 * 300.00022 * 7 6 3 40 40 H 1.09004 * 109.47122 * 60.00589 * 8 7 6 41 41 H 1.08996 * 109.47538 * 300.00166 * 8 7 6 42 42 H 1.08998 * 109.49364 * 67.29329 * 10 9 8 43 43 H 1.08998 * 109.49328 * 307.21576 * 10 9 8 44 44 H 1.09001 * 109.63061 * 186.45807 * 11 10 9 45 45 H 1.09007 * 109.63089 * 65.87889 * 11 10 9 46 46 H 0.96996 * 120.00176 * 179.97438 * 19 18 16 47 47 H 1.09002 * 109.62842 * 68.26050 * 24 12 11 48 48 H 1.08999 * 109.62552 * 188.83458 * 24 12 11 49 49 H 1.08996 * 109.48768 * 292.70454 * 25 9 8 50 50 H 1.08996 * 109.49145 * 52.78540 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6077 2.0890 -1.2218 5 6 2.4055 1.5536 -2.4124 6 6 1.5676 2.1032 1.1992 7 6 2.2192 1.4867 2.4386 8 6 1.7480 2.2343 3.6876 9 7 2.3740 1.6428 4.8777 10 6 2.1367 2.4739 6.0656 11 6 2.9517 1.9239 7.2408 12 7 2.6307 0.4980 7.4053 13 16 2.1885 -0.1089 8.8812 14 8 2.7216 0.7773 9.8557 15 8 2.4852 -1.4982 8.8490 16 6 0.4350 0.0228 8.9952 17 1 -0.1293 0.4434 8.1760 18 6 -0.2171 -0.4167 10.1277 19 7 -1.5263 -0.3234 10.2106 20 14 0.7589 -1.1448 11.5443 21 1 1.1442 -0.0641 12.4870 22 1 -0.0738 -2.1480 12.2551 23 1 1.9822 -1.8011 11.0169 24 6 2.7188 -0.3757 6.2254 25 6 1.9073 0.2659 5.0888 26 1 -0.3634 0.5340 0.8780 27 1 -0.3634 0.4933 -0.9016 28 1 -0.3634 -1.0274 0.0235 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.5439 1.9256 -1.3941 32 1 1.7975 3.1563 -1.1076 33 1 3.4691 1.7195 -2.2412 34 1 2.2178 0.4858 -2.5249 35 1 2.0980 2.0742 -3.3194 36 1 0.4835 2.0257 1.2821 37 1 1.8521 3.1526 1.1231 38 1 3.3033 1.5641 2.3558 39 1 1.9346 0.4372 2.5148 40 1 0.6639 2.1564 3.7703 41 1 2.0321 3.2838 3.6118 42 1 1.0764 2.4542 6.3173 43 1 2.4428 3.4994 5.8590 44 1 2.6927 2.4648 8.1510 45 1 4.0158 2.0381 7.0339 46 1 -1.9851 -0.6329 11.0071 47 1 3.7609 -0.4782 5.9227 48 1 2.3058 -1.3558 6.4639 49 1 0.8502 0.2770 5.3542 50 1 2.0470 -0.3097 4.1739 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192961138.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:52 Heat of formation + Delta-G solvation = -66.107003 kcal Electronic energy + Delta-G solvation = -27966.962088 eV Core-core repulsion = 24156.230264 eV Total energy + Delta-G solvation = -3810.731824 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.16742 -38.40337 -35.70039 -34.93664 -34.42439 -33.03715 -32.36358 -31.40763 -30.76979 -28.96943 -26.40903 -26.26023 -24.62284 -23.53611 -23.38768 -21.15467 -20.28731 -19.87911 -18.45841 -17.58455 -16.82598 -16.52509 -16.33325 -15.41107 -15.35328 -15.03891 -14.91285 -14.58276 -14.36055 -14.02051 -13.89579 -13.60058 -13.50212 -13.36441 -13.05093 -12.81646 -12.59087 -12.50864 -12.19143 -12.01871 -11.89530 -11.68997 -11.63416 -11.42974 -11.37866 -11.28828 -11.12809 -11.01864 -10.88563 -10.78771 -10.57107 -10.50346 -10.36127 -10.30189 -9.76991 -9.21601 -9.14279 -8.52420 -8.43375 -8.02664 -6.81327 -5.34525 2.01303 3.06468 3.17015 3.26532 3.56684 3.94632 4.00858 4.21547 4.58192 4.61303 4.66071 4.89768 4.95802 4.96359 5.04936 5.10638 5.15964 5.19450 5.25236 5.30235 5.33795 5.38856 5.41506 5.43083 5.54438 5.64075 5.65314 5.67788 5.69170 5.72564 5.76264 5.81304 5.84578 5.96823 5.99130 6.01181 6.10366 6.12407 6.24929 6.26101 6.41341 6.61213 6.83551 6.84814 7.20106 7.23207 7.37074 7.47892 8.20140 8.70039 10.31122 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.023417 B = 0.002545 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.419741 B =11001.154949 C =11368.904616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.045 3.955 3 N -0.535 5.535 4 C 0.044 3.956 5 C -0.147 4.147 6 C 0.052 3.948 7 C -0.112 4.112 8 C 0.057 3.943 9 N -0.534 5.534 10 C 0.041 3.959 11 C 0.133 3.867 12 N -1.004 6.004 13 S 2.676 3.324 14 O -1.009 7.009 15 O -1.007 7.007 16 C -1.014 5.014 17 H 0.118 0.882 18 C 0.153 3.847 19 N -0.825 5.825 20 Si 0.801 3.199 21 H -0.246 1.246 22 H -0.255 1.255 23 H -0.219 1.219 24 C 0.133 3.867 25 C 0.038 3.962 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.038 0.962 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.037 0.963 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.031 0.969 41 H 0.072 0.928 42 H 0.043 0.957 43 H 0.080 0.920 44 H 0.093 0.907 45 H 0.067 0.933 46 H 0.280 0.720 47 H 0.067 0.933 48 H 0.093 0.907 49 H 0.043 0.957 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.685 4.847 -21.095 22.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.083 4.083 3 N -0.259 5.259 4 C -0.084 4.084 5 C -0.204 4.204 6 C -0.077 4.077 7 C -0.150 4.150 8 C -0.072 4.072 9 N -0.259 5.259 10 C -0.088 4.088 11 C 0.007 3.993 12 N -0.840 5.840 13 S 2.779 3.221 14 O -0.999 6.999 15 O -0.997 6.997 16 C -1.148 5.148 17 H 0.136 0.864 18 C -0.067 4.067 19 N -0.454 5.454 20 Si 0.621 3.379 21 H -0.170 1.170 22 H -0.179 1.179 23 H -0.141 1.141 24 C 0.007 3.993 25 C -0.091 4.091 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.056 0.944 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.049 0.951 41 H 0.091 0.909 42 H 0.062 0.938 43 H 0.098 0.902 44 H 0.111 0.889 45 H 0.085 0.915 46 H 0.091 0.909 47 H 0.085 0.915 48 H 0.111 0.889 49 H 0.061 0.939 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.164 4.452 -20.441 21.809 hybrid contribution -2.429 -0.029 0.498 2.480 sum 3.735 4.423 -19.943 20.766 Atomic orbital electron populations 1.22432 0.98390 1.02569 1.02004 1.22218 0.92804 0.90320 1.02989 1.62250 1.59497 1.02342 1.01801 1.22131 0.97643 0.98337 0.90262 1.21764 1.01078 1.01011 0.96583 1.22148 0.97696 0.98012 0.89813 1.21585 1.02013 0.99640 0.91743 1.22043 0.96383 0.98739 0.90035 1.61889 1.58510 1.02399 1.03099 1.22495 0.99312 0.96582 0.90422 1.21318 0.99050 0.80982 0.97981 1.57768 1.84879 1.15500 1.25868 1.01421 0.77214 0.72769 0.70687 1.93395 1.81963 1.66876 1.57693 1.93450 1.87276 1.33438 1.85516 1.30547 1.16394 1.55645 1.12204 0.86384 1.24443 0.94802 0.90459 0.96962 1.69989 1.07809 1.38852 1.28756 0.87870 0.83443 0.81892 0.84676 1.17023 1.17921 1.14131 1.21409 1.00150 0.93245 0.84510 1.22636 0.97880 0.89644 0.98929 0.92141 0.92606 0.91953 0.90732 0.90194 0.94392 0.91112 0.91895 0.92768 0.92586 0.94443 0.90955 0.90249 0.91706 0.95123 0.90917 0.93834 0.90190 0.88854 0.91478 0.90946 0.91463 0.88903 0.93873 0.90059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.52 9.28 37.16 0.34 -1.17 16 2 C 0.04 0.36 5.70 -3.83 -0.02 0.34 16 3 N -0.54 -4.59 4.67 -234.63 -1.10 -5.68 16 4 C 0.04 0.32 5.56 -3.83 -0.02 0.30 16 5 C -0.15 -0.96 9.96 37.15 0.37 -0.59 16 6 C 0.05 0.45 4.73 -3.82 -0.02 0.43 16 7 C -0.11 -1.08 5.07 -26.73 -0.14 -1.22 16 8 C 0.06 0.62 4.96 -3.82 -0.02 0.60 16 9 N -0.53 -7.20 4.63 -234.02 -1.08 -8.29 16 10 C 0.04 0.60 5.62 -3.70 -0.02 0.57 16 11 C 0.13 2.24 6.53 -3.60 -0.02 2.21 16 12 N -1.00 -19.88 3.32 -112.97 -0.38 -20.25 16 13 S 2.68 67.25 4.19 -107.50 -0.45 66.80 16 14 O -1.01 -26.92 15.62 -57.17 -0.89 -27.81 16 15 O -1.01 -26.94 14.78 -57.17 -0.85 -27.78 16 16 C -1.01 -28.22 10.29 30.60 0.31 -27.91 16 17 H 0.12 3.34 8.06 -52.49 -0.42 2.92 16 18 C 0.15 4.39 5.47 -17.82 -0.10 4.29 16 19 N -0.82 -23.86 13.96 55.43 0.77 -23.08 16 20 Si 0.80 20.68 26.54 -169.99 -4.51 16.17 16 21 H -0.25 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.22 -5.76 5.60 56.52 0.32 -5.45 16 24 C 0.13 2.25 6.56 -3.37 -0.02 2.23 16 25 C 0.04 0.56 5.48 -3.46 -0.02 0.54 16 26 H 0.06 0.52 6.23 -51.93 -0.32 0.20 16 27 H 0.05 0.42 6.30 -51.93 -0.33 0.09 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.56 6.58 -51.93 -0.34 0.22 16 30 H 0.08 0.69 6.43 -51.93 -0.33 0.35 16 31 H 0.04 0.28 5.91 -51.93 -0.31 -0.03 16 32 H 0.07 0.50 7.81 -51.93 -0.41 0.09 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.35 6.70 -51.93 -0.35 0.01 16 35 H 0.06 0.30 8.14 -51.92 -0.42 -0.12 16 36 H 0.04 0.33 6.00 -51.93 -0.31 0.02 16 37 H 0.07 0.60 7.86 -51.93 -0.41 0.19 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.65 4.79 -51.93 -0.25 0.41 16 40 H 0.03 0.35 8.13 -51.93 -0.42 -0.07 16 41 H 0.07 0.73 7.97 -51.93 -0.41 0.31 16 42 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.08 0.95 7.99 -51.93 -0.41 0.53 16 44 H 0.09 1.63 7.22 -51.93 -0.37 1.26 16 45 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 46 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 47 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.09 1.63 7.21 -51.93 -0.37 1.26 16 49 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.08 0.99 6.16 -51.93 -0.32 0.67 16 LS Contribution 383.52 15.07 5.78 5.78 Total: -1.00 -32.12 383.52 -10.77 -42.89 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -8.70 Total: 0.64 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: 0.63 Total: -19.37 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: -1.78 Total: -57.31 kcal Atomic # 8 Polarization: -53.86 SS G_CDS: -1.74 Total: -55.60 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.51 Total: 16.17 kcal Atomic # 16 Polarization: 67.25 SS G_CDS: -0.45 Total: 66.80 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.12 -10.77 -42.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192961138.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.216 kcal (2) G-P(sol) polarization free energy of solvation -32.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds