Wall clock time and date at job start Tue Mar 31 2020 17:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46900 * 109.46869 * 2 1 4 4 C 1.46899 * 111.00230 * 297.01617 * 3 2 1 5 5 C 1.52995 * 109.47099 * 288.25028 * 4 3 2 6 6 C 1.46904 * 111.00231 * 60.97124 * 3 2 1 7 7 C 1.53002 * 109.46643 * 66.04205 * 6 3 2 8 8 C 1.53001 * 109.46684 * 180.02562 * 7 6 3 9 9 N 1.46908 * 109.47136 * 180.02562 * 8 7 6 10 10 C 1.46902 * 111.00113 * 170.00159 * 9 8 7 11 11 C 1.53232 * 109.33814 * 187.25429 * 10 9 8 12 12 N 1.47081 * 108.52488 * 306.17011 * 11 10 9 13 13 S 1.65594 * 120.88188 * 231.19073 * 12 11 10 14 14 O 1.42099 * 106.40559 * 336.45656 * 13 12 11 15 15 O 1.42095 * 106.40355 * 203.53534 * 13 12 11 16 16 C 1.76206 * 107.22112 * 89.99574 * 13 12 11 17 17 H 1.08002 * 119.99661 * 0.02562 * 16 13 12 18 18 C 1.37876 * 119.99952 * 179.72501 * 16 13 12 19 19 N 1.31513 * 119.99922 * 180.27598 * 18 16 13 20 20 Si 1.86798 * 120.00029 * 0.27360 * 18 16 13 21 21 H 1.48499 * 109.47031 * 90.00572 * 20 18 16 22 22 H 1.48501 * 109.47064 * 210.00052 * 20 18 16 23 23 H 1.48497 * 109.47275 * 330.00326 * 20 18 16 24 24 C 1.47080 * 118.23373 * 51.45591 * 12 11 10 25 25 C 1.46905 * 110.99930 * 294.30402 * 9 8 7 26 26 H 1.09001 * 109.47475 * 301.30776 * 1 2 3 27 27 H 1.09007 * 109.47184 * 61.31286 * 1 2 3 28 28 H 1.09004 * 109.47215 * 181.30917 * 1 2 3 29 29 H 1.08996 * 109.47348 * 240.00470 * 2 1 3 30 30 H 1.08999 * 109.47344 * 119.99930 * 2 1 3 31 31 H 1.09001 * 109.46729 * 48.25071 * 4 3 2 32 32 H 1.09002 * 109.47038 * 168.24530 * 4 3 2 33 33 H 1.09000 * 109.47054 * 299.84593 * 5 4 3 34 34 H 1.09001 * 109.47286 * 59.84579 * 5 4 3 35 35 H 1.09009 * 109.47027 * 179.85047 * 5 4 3 36 36 H 1.09004 * 109.47010 * 306.04888 * 6 3 2 37 37 H 1.08996 * 109.47691 * 186.04440 * 6 3 2 38 38 H 1.08997 * 109.47508 * 60.00518 * 7 6 3 39 39 H 1.09005 * 109.47621 * 300.00022 * 7 6 3 40 40 H 1.09004 * 109.47122 * 60.00589 * 8 7 6 41 41 H 1.08996 * 109.47538 * 300.00166 * 8 7 6 42 42 H 1.08998 * 109.49364 * 67.29329 * 10 9 8 43 43 H 1.08998 * 109.49328 * 307.21576 * 10 9 8 44 44 H 1.09001 * 109.63061 * 186.45807 * 11 10 9 45 45 H 1.09007 * 109.63089 * 65.87889 * 11 10 9 46 46 H 0.96996 * 120.00176 * 179.97438 * 19 18 16 47 47 H 1.09002 * 109.62842 * 68.26050 * 24 12 11 48 48 H 1.08999 * 109.62552 * 188.83458 * 24 12 11 49 49 H 1.08996 * 109.48768 * 292.70454 * 25 9 8 50 50 H 1.08996 * 109.49145 * 52.78540 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6077 2.0890 -1.2218 5 6 2.4055 1.5536 -2.4124 6 6 1.5676 2.1032 1.1992 7 6 2.2192 1.4867 2.4386 8 6 1.7480 2.2343 3.6876 9 7 2.3740 1.6428 4.8777 10 6 2.1367 2.4739 6.0656 11 6 2.9517 1.9239 7.2408 12 7 2.6307 0.4980 7.4053 13 16 2.1885 -0.1089 8.8812 14 8 2.7216 0.7773 9.8557 15 8 2.4852 -1.4982 8.8490 16 6 0.4350 0.0228 8.9952 17 1 -0.1293 0.4434 8.1760 18 6 -0.2171 -0.4167 10.1277 19 7 -1.5263 -0.3234 10.2106 20 14 0.7589 -1.1448 11.5443 21 1 1.1442 -0.0641 12.4870 22 1 -0.0738 -2.1480 12.2551 23 1 1.9822 -1.8011 11.0169 24 6 2.7188 -0.3757 6.2254 25 6 1.9073 0.2659 5.0888 26 1 -0.3634 0.5340 0.8780 27 1 -0.3634 0.4933 -0.9016 28 1 -0.3634 -1.0274 0.0235 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.5439 1.9256 -1.3941 32 1 1.7975 3.1563 -1.1076 33 1 3.4691 1.7195 -2.2412 34 1 2.2178 0.4858 -2.5249 35 1 2.0980 2.0742 -3.3194 36 1 0.4835 2.0257 1.2821 37 1 1.8521 3.1526 1.1231 38 1 3.3033 1.5641 2.3558 39 1 1.9346 0.4372 2.5148 40 1 0.6639 2.1564 3.7703 41 1 2.0321 3.2838 3.6118 42 1 1.0764 2.4542 6.3173 43 1 2.4428 3.4994 5.8590 44 1 2.6927 2.4648 8.1510 45 1 4.0158 2.0381 7.0339 46 1 -1.9851 -0.6329 11.0071 47 1 3.7609 -0.4782 5.9227 48 1 2.3058 -1.3558 6.4639 49 1 0.8502 0.2770 5.3542 50 1 2.0470 -0.3097 4.1739 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192961138.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:51 Heat of formation + Delta-G solvation = -91.026693 kcal Electronic energy + Delta-G solvation = -27968.042687 eV Core-core repulsion = 24156.230264 eV Total energy + Delta-G solvation = -3811.812423 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.12780 -39.29776 -37.76403 -36.51379 -36.11667 -35.20241 -33.23138 -32.11410 -31.98499 -29.75206 -28.57066 -27.35273 -25.33624 -24.75521 -24.27452 -22.11024 -21.60858 -20.54157 -20.32127 -19.39537 -18.71558 -17.34462 -17.20656 -17.00053 -16.85755 -16.21213 -16.07926 -15.71205 -15.47939 -15.40760 -15.34061 -15.06663 -14.84691 -14.65315 -14.13159 -13.95415 -13.78214 -13.52178 -13.39250 -13.12671 -13.10534 -12.98617 -12.77632 -12.75343 -12.59180 -12.54136 -12.28519 -12.26919 -12.16352 -12.09765 -11.96357 -11.84640 -11.62045 -11.45124 -11.35709 -11.16493 -11.11679 -9.93226 -9.24714 -9.15952 -8.99105 -7.54453 0.08491 1.02533 1.11847 1.19416 1.86790 2.38302 2.40929 2.79602 3.14406 3.37035 3.77618 3.88241 3.95148 4.02335 4.13029 4.22626 4.26147 4.31134 4.33983 4.40059 4.42837 4.45493 4.50320 4.55409 4.56956 4.66731 4.67501 4.71104 4.74339 4.79766 4.83986 4.88971 4.95684 5.07161 5.13175 5.13683 5.13939 5.17499 5.24728 5.30466 5.37520 5.39658 5.51928 5.82688 5.98032 6.05473 6.14160 6.21827 6.24591 6.51288 8.18736 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.023417 B = 0.002545 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.419741 B =11001.154949 C =11368.904616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.045 3.955 3 N -0.544 5.544 4 C 0.043 3.957 5 C -0.143 4.143 6 C 0.056 3.944 7 C -0.101 4.101 8 C 0.058 3.942 9 N -0.531 5.531 10 C 0.045 3.955 11 C 0.123 3.877 12 N -1.002 6.002 13 S 2.695 3.305 14 O -1.026 7.026 15 O -1.025 7.025 16 C -1.033 5.033 17 H 0.099 0.901 18 C 0.107 3.893 19 N -0.855 5.855 20 Si 0.825 3.175 21 H -0.239 1.239 22 H -0.219 1.219 23 H -0.229 1.229 24 C 0.124 3.876 25 C 0.044 3.956 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.039 0.961 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.035 0.965 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.060 0.940 40 H 0.024 0.976 41 H 0.089 0.911 42 H 0.022 0.978 43 H 0.113 0.887 44 H 0.082 0.918 45 H 0.092 0.908 46 H 0.291 0.709 47 H 0.091 0.909 48 H 0.080 0.920 49 H 0.020 0.980 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.802 5.336 -22.528 23.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.083 4.083 3 N -0.267 5.267 4 C -0.085 4.085 5 C -0.201 4.201 6 C -0.072 4.072 7 C -0.139 4.139 8 C -0.070 4.070 9 N -0.256 5.256 10 C -0.084 4.084 11 C -0.002 4.002 12 N -0.842 5.842 13 S 2.796 3.204 14 O -1.017 7.017 15 O -1.015 7.015 16 C -1.165 5.165 17 H 0.117 0.883 18 C -0.109 4.109 19 N -0.486 5.486 20 Si 0.642 3.358 21 H -0.162 1.162 22 H -0.141 1.141 23 H -0.151 1.151 24 C -0.001 4.001 25 C -0.085 4.085 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.053 0.947 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.042 0.958 41 H 0.107 0.893 42 H 0.040 0.960 43 H 0.131 0.869 44 H 0.100 0.900 45 H 0.110 0.890 46 H 0.101 0.899 47 H 0.109 0.891 48 H 0.099 0.901 49 H 0.039 0.961 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.245 4.940 -21.871 23.563 hybrid contribution -2.761 -0.123 0.811 2.880 sum 4.484 4.816 -21.060 22.064 Atomic orbital electron populations 1.22383 0.98230 1.02638 1.01672 1.22213 0.92877 0.90216 1.02989 1.62263 1.59736 1.02583 1.02155 1.22183 0.97813 0.98494 0.90003 1.21734 1.00518 1.01060 0.96745 1.22081 0.97381 0.98292 0.89491 1.21459 1.01590 0.99225 0.91590 1.22111 0.95872 0.99687 0.89297 1.61931 1.58497 1.01752 1.03418 1.22477 0.97631 0.98303 0.90037 1.21621 1.00938 0.78972 0.98672 1.57453 1.84365 1.17298 1.25052 1.00656 0.75691 0.72231 0.71777 1.93361 1.81569 1.67169 1.59558 1.93415 1.86977 1.34691 1.86454 1.31037 1.18683 1.55167 1.11625 0.88289 1.25188 0.95724 0.90976 0.99005 1.70014 1.08701 1.39803 1.30041 0.87494 0.82763 0.82528 0.83046 1.16188 1.14144 1.15111 1.21693 1.01960 0.92488 0.83978 1.22574 0.96056 0.90821 0.99068 0.93118 0.92253 0.91675 0.90170 0.90768 0.94304 0.90739 0.92525 0.92886 0.91404 0.94724 0.90267 0.90734 0.92183 0.95788 0.89280 0.96002 0.86883 0.90010 0.89017 0.89869 0.89066 0.90145 0.96118 0.87362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.74 9.28 71.98 0.67 -2.07 16 2 C 0.04 0.66 5.70 86.30 0.49 1.15 16 3 N -0.54 -8.38 4.67 -896.24 -4.18 -12.56 16 4 C 0.04 0.55 5.56 86.30 0.48 1.03 16 5 C -0.14 -1.62 9.96 71.98 0.72 -0.90 16 6 C 0.06 0.86 4.73 86.30 0.41 1.27 16 7 C -0.10 -1.74 5.07 30.60 0.16 -1.59 16 8 C 0.06 1.16 4.96 86.30 0.43 1.58 16 9 N -0.53 -13.26 4.63 -894.31 -4.14 -17.40 16 10 C 0.05 1.23 5.62 86.38 0.49 1.71 16 11 C 0.12 3.99 6.53 86.35 0.56 4.55 16 12 N -1.00 -39.21 3.32 -511.34 -1.70 -40.91 16 13 S 2.70 136.15 4.19 -56.49 -0.24 135.91 16 14 O -1.03 -54.74 15.62 -128.00 -2.00 -56.74 16 15 O -1.03 -54.99 14.78 -128.00 -1.89 -56.88 16 16 C -1.03 -58.90 10.29 67.73 0.70 -58.20 16 17 H 0.10 5.85 8.06 -2.91 -0.02 5.82 16 18 C 0.11 6.26 5.47 84.65 0.46 6.72 16 19 N -0.86 -50.07 13.96 21.45 0.30 -49.77 16 20 Si 0.82 41.59 26.54 68.60 1.82 43.41 16 21 H -0.24 -11.65 7.11 99.48 0.71 -10.94 16 22 H -0.22 -9.73 7.11 99.48 0.71 -9.03 16 23 H -0.23 -11.85 5.60 99.48 0.56 -11.30 16 24 C 0.12 4.07 6.56 86.50 0.57 4.64 16 25 C 0.04 1.24 5.48 86.53 0.47 1.71 16 26 H 0.05 0.83 6.23 -2.39 -0.01 0.81 16 27 H 0.06 0.80 6.30 -2.38 -0.02 0.79 16 28 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 29 H 0.08 1.09 6.58 -2.39 -0.02 1.07 16 30 H 0.07 1.17 6.43 -2.39 -0.02 1.16 16 31 H 0.04 0.50 5.91 -2.39 -0.01 0.49 16 32 H 0.07 0.91 7.81 -2.39 -0.02 0.89 16 33 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.05 0.61 6.70 -2.39 -0.02 0.59 16 35 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 36 H 0.03 0.56 6.00 -2.38 -0.01 0.55 16 37 H 0.08 1.12 7.86 -2.39 -0.02 1.10 16 38 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.06 1.10 4.79 -2.38 -0.01 1.09 16 40 H 0.02 0.52 8.13 -2.38 -0.02 0.50 16 41 H 0.09 1.51 7.97 -2.39 -0.02 1.49 16 42 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.11 2.35 7.99 -2.39 -0.02 2.33 16 44 H 0.08 2.83 7.22 -2.39 -0.02 2.81 16 45 H 0.09 2.54 8.14 -2.38 -0.02 2.53 16 46 H 0.29 15.32 8.31 -92.71 -0.77 14.55 16 47 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 48 H 0.08 2.83 7.21 -2.39 -0.02 2.81 16 49 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 50 H 0.11 2.43 6.16 -2.39 -0.01 2.42 16 Total: -1.00 -68.72 383.52 -4.67 -73.39 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.76 Total: 19.93 kcal Atomic # 6 Polarization: -44.98 SS G_CDS: 6.60 Total: -38.38 kcal Atomic # 7 Polarization: -110.92 SS G_CDS: -9.72 Total: -120.65 kcal Atomic # 8 Polarization: -109.73 SS G_CDS: -3.89 Total: -113.62 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 1.82 Total: 43.41 kcal Atomic # 16 Polarization: 136.15 SS G_CDS: -0.24 Total: 135.91 kcal Total: -68.72 -4.67 -73.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192961138.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.636 kcal (2) G-P(sol) polarization free energy of solvation -68.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds