Wall clock time and date at job start Tue Mar 31 2020 18:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.08997 * 112.88651 * 334.39012 * 10 9 7 12 12 C 1.53955 * 113.66415 * 105.73736 * 10 9 7 13 13 C 1.53944 * 87.29354 * 139.20576 * 12 10 9 14 14 H 1.09004 * 113.66438 * 89.73978 * 13 12 10 15 15 N 1.46502 * 113.66111 * 220.69894 * 13 12 10 16 16 C 1.34774 * 120.00316 * 255.49533 * 15 13 12 17 17 O 1.21290 * 119.99812 * 0.02562 * 16 15 13 18 18 C 1.50698 * 120.00311 * 179.97438 * 16 15 13 19 19 C 1.53004 * 109.46998 * 180.02562 * 18 16 15 20 20 C 1.53004 * 109.46694 * 180.02562 * 19 18 16 21 21 N 1.46502 * 109.46797 * 180.02562 * 20 19 18 22 22 C 1.35309 * 125.86970 * 124.71604 * 21 20 19 23 23 C 1.35354 * 106.17753 * 179.90324 * 22 21 20 24 24 N 1.33775 * 106.49531 * 0.34891 * 23 22 21 25 25 N 1.28641 * 108.88432 * 359.77472 * 24 23 22 26 26 C 1.52905 * 113.66082 * 203.04543 * 10 9 7 27 27 C 1.52909 * 121.14344 * 94.90673 * 26 10 9 28 28 C 1.53956 * 86.78392 * 209.37835 * 27 26 10 29 29 C 1.52909 * 121.14017 * 346.33906 * 26 10 9 30 30 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 32 32 H 1.09004 * 113.57624 * 253.81123 * 12 10 9 33 33 H 1.09000 * 113.57682 * 24.51970 * 12 10 9 34 34 H 0.97005 * 119.99903 * 75.49152 * 15 13 12 35 35 H 1.09000 * 109.47341 * 300.00359 * 18 16 15 36 36 H 1.08999 * 109.47110 * 60.00473 * 18 16 15 37 37 H 1.09001 * 109.46648 * 299.99697 * 19 18 16 38 38 H 1.08996 * 109.47473 * 60.00218 * 19 18 16 39 39 H 1.08994 * 109.46991 * 299.99531 * 20 19 18 40 40 H 1.08999 * 109.47493 * 60.00205 * 20 19 18 41 41 H 1.08000 * 126.91152 * 0.02562 * 22 21 20 42 42 H 1.07994 * 126.75614 * 180.12724 * 23 22 21 43 43 H 1.09005 * 113.66023 * 323.84452 * 27 26 10 44 44 H 1.08994 * 113.66410 * 94.90415 * 27 26 10 45 45 H 1.09003 * 113.57897 * 270.13399 * 28 27 26 46 46 H 1.08993 * 113.58234 * 139.34074 * 28 27 26 47 47 H 1.08998 * 113.66495 * 265.10005 * 29 26 10 48 48 H 1.09005 * 113.65961 * 36.15456 * 29 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 3.0561 -3.5723 -0.4225 12 6 2.0295 -4.3796 1.3663 13 6 1.8395 -5.6909 0.5826 14 1 2.7761 -6.1796 0.3138 15 7 0.8742 -6.6072 1.1947 16 6 1.3070 -7.6979 1.8576 17 8 2.4959 -7.9207 1.9477 18 6 0.3140 -8.6401 2.4878 19 6 1.0619 -9.7859 3.1726 20 6 0.0536 -10.7429 3.8118 21 7 0.7696 -11.8397 4.4680 22 6 0.6440 -12.2048 5.7648 23 6 1.4787 -13.2553 5.9434 24 7 2.0722 -13.4735 4.7645 25 7 1.6304 -12.6181 3.9113 26 6 1.2512 -4.8341 -0.5416 27 6 1.3684 -5.2590 -2.0058 28 6 -0.0877 -5.7456 -1.8910 29 6 -0.2603 -4.7292 -0.7477 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 2.9743 -4.3279 1.9075 33 1 1.1728 -4.1117 1.9847 34 1 -0.0767 -6.4288 1.1230 35 1 -0.2798 -8.1016 3.2264 36 1 -0.3432 -9.0438 1.7176 37 1 1.6558 -10.3246 2.4342 38 1 1.7188 -9.3821 3.9428 39 1 -0.5407 -10.2044 4.5500 40 1 -0.6031 -11.1468 3.0413 41 1 0.0047 -11.7508 6.5075 42 1 1.6374 -13.8064 6.8585 43 1 1.4976 -4.4240 -2.6946 44 1 2.0863 -6.0621 -2.1721 45 1 -0.1765 -6.7832 -1.5690 46 1 -0.6930 -5.5211 -2.7692 47 1 -0.8436 -5.1091 0.0910 48 1 -0.5889 -3.7454 -1.0829 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203026697.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:00 Heat of formation + Delta-G solvation = 113.398855 kcal Electronic energy + Delta-G solvation = -27993.951439 eV Core-core repulsion = 24087.852372 eV Total energy + Delta-G solvation = -3906.099067 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.53010 -40.72214 -39.15613 -36.21217 -34.96445 -34.15779 -33.04813 -32.40912 -31.33353 -29.92240 -28.07822 -25.58093 -24.86874 -24.24159 -23.62397 -22.95042 -22.10037 -21.37216 -20.44168 -20.31711 -18.39431 -17.75851 -17.30021 -16.94361 -16.56035 -16.20527 -16.00486 -15.30296 -15.17804 -14.84230 -14.73951 -14.47711 -14.21761 -13.86369 -13.20835 -13.08021 -12.90170 -12.63765 -12.48800 -12.28535 -12.13900 -11.94552 -11.88269 -11.57114 -11.39849 -11.35291 -11.17096 -11.05141 -10.85609 -10.77637 -10.44927 -10.26135 -10.10965 -10.05600 -9.90704 -9.71133 -9.68002 -9.46697 -8.87392 -8.76602 -7.00755 -5.84541 -3.12609 1.27903 1.96713 2.29428 2.59068 3.15976 3.38945 3.45775 3.47259 3.93599 4.18257 4.24079 4.40313 4.53829 4.65644 4.67023 4.68496 4.78899 4.85160 4.87797 4.89933 4.96824 5.09183 5.12063 5.21462 5.31254 5.40411 5.55309 5.58089 5.77084 5.78803 5.84408 5.86128 5.94778 5.97134 6.07560 6.11201 6.20167 6.22245 6.27108 6.33757 6.51572 6.56154 6.70848 6.86975 7.02207 7.56140 7.66370 8.21160 8.22195 8.34616 9.46365 10.03156 10.38091 11.37934 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.022073 B = 0.001952 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.193487 B =14342.788886 C =14893.144582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.181 3.819 11 H 0.079 0.921 12 C -0.174 4.174 13 C 0.145 3.855 14 H 0.109 0.891 15 N -0.712 5.712 16 C 0.511 3.489 17 O -0.542 6.542 18 C -0.139 4.139 19 C -0.118 4.118 20 C 0.114 3.886 21 N -0.289 5.289 22 C -0.052 4.052 23 C -0.054 4.054 24 N -0.274 5.274 25 N -0.080 5.080 26 C -0.123 4.123 27 C -0.122 4.122 28 C -0.140 4.140 29 C -0.108 4.108 30 H 0.255 0.745 31 H 0.386 0.614 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.399 0.601 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.190 0.810 42 H 0.189 0.811 43 H 0.086 0.914 44 H 0.060 0.940 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.056 0.944 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.030 -21.825 7.401 23.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.345 5.345 10 C 0.068 3.932 11 H 0.097 0.903 12 C -0.217 4.217 13 C 0.040 3.960 14 H 0.127 0.873 15 N -0.362 5.362 16 C 0.296 3.704 17 O -0.420 6.420 18 C -0.180 4.180 19 C -0.156 4.156 20 C -0.007 4.007 21 N -0.082 5.082 22 C -0.203 4.203 23 C -0.212 4.212 24 N -0.140 5.140 25 N -0.060 5.060 26 C -0.125 4.125 27 C -0.160 4.160 28 C -0.177 4.177 29 C -0.145 4.145 30 H 0.065 0.935 31 H 0.221 0.779 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.235 0.765 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.126 0.874 40 H 0.120 0.880 41 H 0.207 0.793 42 H 0.206 0.794 43 H 0.105 0.895 44 H 0.079 0.921 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.075 0.925 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.322 -22.132 6.125 23.367 hybrid contribution -1.115 1.473 1.170 2.187 sum -5.436 -20.659 7.295 22.574 Atomic orbital electron populations 1.69661 1.05108 1.25632 1.57723 1.24745 0.95534 0.97752 1.02848 0.86119 0.78882 0.84046 0.77162 1.20498 1.21863 1.21897 1.19360 0.91182 0.84117 1.42601 0.90990 1.42319 1.05761 0.99522 1.86875 1.21152 0.94997 0.84826 0.92245 0.90278 1.24281 1.01679 0.95092 1.00614 1.22192 0.92432 0.87918 0.93477 0.87302 1.46041 1.10613 1.24693 1.54897 1.20446 0.89680 0.81588 0.78636 1.90730 1.17327 1.74317 1.59596 1.21566 0.98591 0.96324 1.01529 1.21597 0.97385 0.94941 1.01698 1.22231 0.94499 0.85170 0.98840 1.47538 1.28556 1.23829 1.08311 1.23731 1.06767 1.01867 0.87949 1.23653 0.99005 0.99622 0.98882 1.75152 1.21325 1.17599 0.99955 1.78349 1.04497 1.01128 1.22037 1.23480 0.97368 0.97844 0.93833 1.22683 0.96269 1.00542 0.96495 1.22836 0.97503 0.98417 0.98975 1.22452 0.94162 1.00436 0.97496 0.93537 0.77903 0.92194 0.90237 0.76522 0.88446 0.88376 0.89060 0.90099 0.87395 0.87981 0.79263 0.79401 0.89530 0.92082 0.91061 0.91849 0.92523 0.88377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.13 13.06 55.49 0.72 -26.40 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.24 -6.46 9.97 -15.06 -0.15 -6.61 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.71 -16.64 5.32 -52.99 -0.28 -16.92 16 10 C 0.18 3.41 4.35 -67.48 -0.29 3.11 16 11 H 0.08 1.53 8.11 -51.93 -0.42 1.11 16 12 C -0.17 -2.97 7.68 -25.75 -0.20 -3.17 16 13 C 0.14 2.08 4.08 -67.38 -0.27 1.80 16 14 H 0.11 1.70 7.54 -51.93 -0.39 1.30 16 15 N -0.71 -8.17 5.31 -53.27 -0.28 -8.45 16 16 C 0.51 5.96 7.83 -10.99 -0.09 5.88 16 17 O -0.54 -8.79 15.62 5.55 0.09 -8.70 16 18 C -0.14 -0.90 5.70 -27.88 -0.16 -1.06 16 19 C -0.12 -0.89 4.63 -26.73 -0.12 -1.01 16 20 C 0.11 0.55 6.46 -4.04 -0.03 0.52 16 21 N -0.29 -2.39 3.44 -61.26 -0.21 -2.60 16 22 C -0.05 -0.34 11.57 -17.05 -0.20 -0.53 16 23 C -0.05 -0.45 12.05 -17.73 -0.21 -0.66 16 24 N -0.27 -3.37 12.41 30.23 0.38 -3.00 16 25 N -0.08 -0.96 12.91 60.35 0.78 -0.19 16 26 C -0.12 -1.83 1.07 -154.61 -0.17 -2.00 16 27 C -0.12 -1.69 7.85 -26.28 -0.21 -1.90 16 28 C -0.14 -1.68 8.08 -25.75 -0.21 -1.89 16 29 C -0.11 -1.50 6.77 -26.28 -0.18 -1.68 16 30 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.39 9.50 6.17 -40.82 -0.25 9.24 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.40 3.74 6.69 -40.82 -0.27 3.47 16 35 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 0.93 8.08 -51.93 -0.42 0.51 16 38 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 39 H 0.11 0.18 8.07 -51.93 -0.42 -0.23 16 40 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.19 0.41 8.06 -52.49 -0.42 -0.01 16 42 H 0.19 0.90 8.06 -52.49 -0.42 0.47 16 43 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.06 0.68 6.43 -51.93 -0.33 0.35 16 48 H 0.10 1.65 6.99 -51.93 -0.36 1.29 16 LS Contribution 394.26 15.07 5.94 5.94 Total: -1.00 -35.12 394.26 -7.96 -43.07 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -7.49 Total: 9.99 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -2.58 Total: -9.65 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: 1.10 Total: -57.55 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.09 Total: -8.70 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.12 -7.96 -43.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203026697.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.473 kcal (2) G-P(sol) polarization free energy of solvation -35.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds