Wall clock time and date at job start Tue Mar 31 2020 18:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.08997 * 112.88651 * 334.39012 * 10 9 7 12 12 C 1.53955 * 113.66415 * 105.73736 * 10 9 7 13 13 C 1.53944 * 87.29354 * 139.20576 * 12 10 9 14 14 H 1.09004 * 113.66438 * 89.73978 * 13 12 10 15 15 N 1.46502 * 113.66111 * 220.69894 * 13 12 10 16 16 C 1.34774 * 120.00316 * 255.49533 * 15 13 12 17 17 O 1.21290 * 119.99812 * 0.02562 * 16 15 13 18 18 C 1.50698 * 120.00311 * 179.97438 * 16 15 13 19 19 C 1.53004 * 109.46998 * 180.02562 * 18 16 15 20 20 C 1.53004 * 109.46694 * 180.02562 * 19 18 16 21 21 N 1.46502 * 109.46797 * 180.02562 * 20 19 18 22 22 C 1.35309 * 125.86970 * 124.71604 * 21 20 19 23 23 C 1.35354 * 106.17753 * 179.90324 * 22 21 20 24 24 N 1.33775 * 106.49531 * 0.34891 * 23 22 21 25 25 N 1.28641 * 108.88432 * 359.77472 * 24 23 22 26 26 C 1.52905 * 113.66082 * 203.04543 * 10 9 7 27 27 C 1.52909 * 121.14344 * 94.90673 * 26 10 9 28 28 C 1.53956 * 86.78392 * 209.37835 * 27 26 10 29 29 C 1.52909 * 121.14017 * 346.33906 * 26 10 9 30 30 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 32 32 H 1.09004 * 113.57624 * 253.81123 * 12 10 9 33 33 H 1.09000 * 113.57682 * 24.51970 * 12 10 9 34 34 H 0.97005 * 119.99903 * 75.49152 * 15 13 12 35 35 H 1.09000 * 109.47341 * 300.00359 * 18 16 15 36 36 H 1.08999 * 109.47110 * 60.00473 * 18 16 15 37 37 H 1.09001 * 109.46648 * 299.99697 * 19 18 16 38 38 H 1.08996 * 109.47473 * 60.00218 * 19 18 16 39 39 H 1.08994 * 109.46991 * 299.99531 * 20 19 18 40 40 H 1.08999 * 109.47493 * 60.00205 * 20 19 18 41 41 H 1.08000 * 126.91152 * 0.02562 * 22 21 20 42 42 H 1.07994 * 126.75614 * 180.12724 * 23 22 21 43 43 H 1.09005 * 113.66023 * 323.84452 * 27 26 10 44 44 H 1.08994 * 113.66410 * 94.90415 * 27 26 10 45 45 H 1.09003 * 113.57897 * 270.13399 * 28 27 26 46 46 H 1.08993 * 113.58234 * 139.34074 * 28 27 26 47 47 H 1.08998 * 113.66495 * 265.10005 * 29 26 10 48 48 H 1.09005 * 113.65961 * 36.15456 * 29 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 3.0561 -3.5723 -0.4225 12 6 2.0295 -4.3796 1.3663 13 6 1.8395 -5.6909 0.5826 14 1 2.7761 -6.1796 0.3138 15 7 0.8742 -6.6072 1.1947 16 6 1.3070 -7.6979 1.8576 17 8 2.4959 -7.9207 1.9477 18 6 0.3140 -8.6401 2.4878 19 6 1.0619 -9.7859 3.1726 20 6 0.0536 -10.7429 3.8118 21 7 0.7696 -11.8397 4.4680 22 6 0.6440 -12.2048 5.7648 23 6 1.4787 -13.2553 5.9434 24 7 2.0722 -13.4735 4.7645 25 7 1.6304 -12.6181 3.9113 26 6 1.2512 -4.8341 -0.5416 27 6 1.3684 -5.2590 -2.0058 28 6 -0.0877 -5.7456 -1.8910 29 6 -0.2603 -4.7292 -0.7477 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 2.9743 -4.3279 1.9075 33 1 1.1728 -4.1117 1.9847 34 1 -0.0767 -6.4288 1.1230 35 1 -0.2798 -8.1016 3.2264 36 1 -0.3432 -9.0438 1.7176 37 1 1.6558 -10.3246 2.4342 38 1 1.7188 -9.3821 3.9428 39 1 -0.5407 -10.2044 4.5500 40 1 -0.6031 -11.1468 3.0413 41 1 0.0047 -11.7508 6.5075 42 1 1.6374 -13.8064 6.8585 43 1 1.4976 -4.4240 -2.6946 44 1 2.0863 -6.0621 -2.1721 45 1 -0.1765 -6.7832 -1.5690 46 1 -0.6930 -5.5211 -2.7692 47 1 -0.8436 -5.1091 0.0910 48 1 -0.5889 -3.7454 -1.0829 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203026697.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:59 Heat of formation + Delta-G solvation = 88.454201 kcal Electronic energy + Delta-G solvation = -27995.033120 eV Core-core repulsion = 24087.852372 eV Total energy + Delta-G solvation = -3907.180748 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.12528 -41.92805 -40.18330 -36.78799 -36.38588 -35.58107 -34.16824 -33.48259 -31.91406 -31.70711 -28.72929 -26.79268 -26.42446 -25.41583 -24.74182 -23.63765 -23.19864 -22.00162 -21.73555 -21.25718 -19.49826 -19.17626 -18.47208 -17.73939 -17.39687 -17.28350 -16.80941 -16.43343 -16.34093 -15.95523 -15.79563 -15.39489 -15.22053 -14.86880 -14.81465 -14.31052 -13.90611 -13.66668 -13.38866 -13.20339 -13.14148 -13.09062 -12.88792 -12.83827 -12.80108 -12.54469 -12.33555 -12.25532 -12.06175 -11.99137 -11.82888 -11.74230 -11.36625 -11.22590 -11.06731 -11.03879 -10.74594 -10.63893 -10.29379 -9.90739 -8.94613 -7.95684 -5.22124 0.72401 1.46083 1.47112 1.53835 1.56445 1.66939 1.69010 2.25631 2.56240 3.35524 3.42894 3.50272 3.60491 3.68227 3.76135 3.79162 3.89046 3.95138 4.00011 4.15068 4.21626 4.23683 4.32698 4.36560 4.38163 4.44427 4.55761 4.64000 4.68160 4.76888 4.78159 4.82233 4.96370 5.00778 5.03627 5.07294 5.14117 5.14842 5.20721 5.32713 5.37683 5.46254 5.51764 5.61655 5.73658 5.74923 6.27593 6.64359 7.32871 7.34873 7.57536 8.11163 8.36378 9.27357 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.022073 B = 0.001952 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.193487 B =14342.788886 C =14893.144582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.072 4.072 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.716 5.716 10 C 0.159 3.841 11 H 0.067 0.933 12 C -0.169 4.169 13 C 0.165 3.835 14 H 0.098 0.902 15 N -0.702 5.702 16 C 0.505 3.495 17 O -0.594 6.594 18 C -0.126 4.126 19 C -0.111 4.111 20 C 0.111 3.889 21 N -0.288 5.288 22 C -0.033 4.033 23 C -0.073 4.073 24 N -0.322 5.322 25 N -0.131 5.131 26 C -0.112 4.112 27 C -0.127 4.127 28 C -0.120 4.120 29 C -0.108 4.108 30 H 0.251 0.749 31 H 0.379 0.621 32 H 0.049 0.951 33 H 0.073 0.927 34 H 0.414 0.586 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.153 0.847 40 H 0.122 0.878 41 H 0.239 0.761 42 H 0.214 0.786 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.097 0.903 46 H 0.071 0.929 47 H 0.081 0.919 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.335 -23.118 8.503 26.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.264 4.264 3 Si 0.797 3.203 4 H -0.195 1.195 5 H -0.220 1.220 6 H -0.222 1.222 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.354 5.354 10 C 0.048 3.952 11 H 0.085 0.915 12 C -0.211 4.211 13 C 0.059 3.941 14 H 0.116 0.884 15 N -0.354 5.354 16 C 0.294 3.706 17 O -0.475 6.475 18 C -0.166 4.166 19 C -0.151 4.151 20 C -0.008 4.008 21 N -0.082 5.082 22 C -0.185 4.185 23 C -0.231 4.231 24 N -0.187 5.187 25 N -0.111 5.111 26 C -0.114 4.114 27 C -0.164 4.164 28 C -0.157 4.157 29 C -0.146 4.146 30 H 0.060 0.940 31 H 0.213 0.787 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.252 0.748 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.170 0.830 40 H 0.140 0.860 41 H 0.255 0.745 42 H 0.231 0.769 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.115 0.885 46 H 0.090 0.910 47 H 0.099 0.901 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.621 -23.468 7.202 25.425 hybrid contribution -0.342 1.851 0.892 2.082 sum -6.963 -21.617 8.094 24.110 Atomic orbital electron populations 1.69790 1.06286 1.25885 1.59597 1.25452 0.96377 1.00682 1.03900 0.85161 0.78182 0.80328 0.76625 1.19517 1.22047 1.22159 1.19684 0.91383 0.85515 1.40800 0.91126 1.42398 1.05525 1.00247 1.87263 1.21430 0.95006 0.84511 0.94208 0.91457 1.24108 1.00913 0.96668 0.99375 1.21685 0.92811 0.87343 0.92275 0.88396 1.45891 1.10748 1.24173 1.54571 1.21437 0.89955 0.81623 0.77607 1.90723 1.20032 1.75423 1.61313 1.21603 0.97306 0.94758 1.02911 1.21445 0.97734 0.95582 1.00293 1.22546 0.93540 0.84078 1.00618 1.47861 1.27661 1.23629 1.09083 1.24491 1.05713 1.00543 0.87757 1.24283 0.99220 1.00808 0.98764 1.75069 1.23042 1.18874 1.01716 1.78278 1.06867 1.02776 1.23150 1.23329 0.97859 0.95413 0.94829 1.22694 0.98379 1.00406 0.94958 1.22773 0.95550 0.99016 0.98349 1.22406 0.93186 0.99727 0.99304 0.94029 0.78676 0.93251 0.90809 0.74782 0.84798 0.84847 0.92582 0.92673 0.82955 0.85987 0.74504 0.76911 0.91311 0.90970 0.88471 0.91042 0.90074 0.91537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.16 13.06 21.65 0.28 -56.88 16 2 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 3 Si 0.97 45.73 29.55 68.60 2.03 47.76 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 7 C -0.24 -13.20 9.97 84.03 0.84 -12.36 16 8 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 9 N -0.72 -34.54 5.32 -321.56 -1.71 -36.26 16 10 C 0.16 6.13 4.35 45.28 0.20 6.33 16 11 H 0.07 2.71 8.11 -2.39 -0.02 2.69 16 12 C -0.17 -5.79 7.68 31.23 0.24 -5.55 16 13 C 0.17 4.60 4.08 45.34 0.19 4.79 16 14 H 0.10 3.04 7.54 -2.39 -0.02 3.02 16 15 N -0.70 -14.33 5.31 -440.84 -2.34 -16.67 16 16 C 0.51 10.72 7.83 87.66 0.69 11.41 16 17 O -0.59 -19.19 15.62 -3.06 -0.05 -19.24 16 18 C -0.13 -1.12 5.70 29.85 0.17 -0.95 16 19 C -0.11 -1.47 4.63 30.60 0.14 -1.33 16 20 C 0.11 0.66 6.46 86.38 0.56 1.22 16 21 N -0.29 -4.17 3.44 -347.73 -1.20 -5.36 16 22 C -0.03 -0.33 11.57 83.49 0.97 0.64 16 23 C -0.07 -1.10 12.05 83.73 1.01 -0.09 16 24 N -0.32 -8.05 12.41 -58.26 -0.72 -8.77 16 25 N -0.13 -3.19 12.91 37.02 0.48 -2.71 16 26 C -0.11 -3.26 1.07 -52.25 -0.06 -3.32 16 27 C -0.13 -3.36 7.85 30.89 0.24 -3.12 16 28 C -0.12 -2.54 8.08 31.23 0.25 -2.29 16 29 C -0.11 -2.85 6.77 30.88 0.21 -2.64 16 30 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 31 H 0.38 19.15 6.17 -92.71 -0.57 18.57 16 32 H 0.05 1.76 8.14 -2.38 -0.02 1.75 16 33 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 34 H 0.41 6.11 6.69 -92.70 -0.62 5.49 16 35 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.13 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.06 1.14 8.08 -2.39 -0.02 1.12 16 38 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 39 H 0.15 -0.42 8.07 -2.39 -0.02 -0.44 16 40 H 0.12 0.29 8.14 -2.39 -0.02 0.28 16 41 H 0.24 -0.28 8.06 -2.91 -0.02 -0.31 16 42 H 0.21 1.67 8.06 -2.91 -0.02 1.65 16 43 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 44 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.08 1.70 6.43 -2.39 -0.02 1.69 16 48 H 0.07 2.23 6.99 -2.38 -0.02 2.22 16 Total: -1.00 -83.27 394.26 2.66 -80.61 By element: Atomic # 1 Polarization: 28.58 SS G_CDS: -0.21 Total: 28.37 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: 6.11 Total: -10.84 kcal Atomic # 7 Polarization: -121.45 SS G_CDS: -5.21 Total: -126.66 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.05 Total: -19.24 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -83.27 2.66 -80.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203026697.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.060 kcal (2) G-P(sol) polarization free energy of solvation -83.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds