Wall clock time and date at job start Tue Mar 31 2020 18:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99929 * 2 1 4 4 H 1.48500 * 109.47009 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47105 * 299.99584 * 3 2 1 6 6 H 1.48493 * 109.47245 * 59.99643 * 3 2 1 7 7 C 1.38809 * 119.99739 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99830 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00439 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00101 * 179.97438 * 9 7 2 11 11 H 1.08995 * 112.88954 * 333.16107 * 10 9 7 12 12 C 1.53955 * 113.65857 * 104.50792 * 10 9 7 13 13 C 1.53946 * 87.29459 * 89.73555 * 12 10 9 14 14 H 1.08994 * 113.66527 * 270.16427 * 13 12 10 15 15 N 1.46505 * 113.66164 * 139.20501 * 13 12 10 16 16 C 1.34777 * 120.00115 * 106.01148 * 15 13 12 17 17 O 1.21282 * 119.99620 * 359.97438 * 16 15 13 18 18 C 1.50697 * 120.00369 * 180.02562 * 16 15 13 19 19 C 1.52997 * 109.47466 * 180.02562 * 18 16 15 20 20 C 1.53000 * 109.47060 * 180.02562 * 19 18 16 21 21 N 1.46499 * 109.46840 * 180.02562 * 20 19 18 22 22 C 1.35313 * 125.87097 * 124.71490 * 21 20 19 23 23 C 1.35353 * 106.17700 * 179.90308 * 22 21 20 24 24 N 1.33768 * 106.49406 * 0.35174 * 23 22 21 25 25 N 1.28629 * 108.88677 * 359.77469 * 24 23 22 26 26 C 1.52906 * 86.88641 * 24.69132 * 13 12 10 27 27 C 1.52915 * 121.14142 * 209.42908 * 26 13 12 28 28 C 1.53952 * 86.78303 * 209.37125 * 27 26 13 29 29 C 1.52909 * 121.14480 * 100.86136 * 26 13 12 30 30 H 0.97000 * 119.99943 * 0.02562 * 1 2 3 31 31 H 0.96996 * 119.99807 * 0.02562 * 9 7 2 32 32 H 1.08997 * 113.57838 * 335.13048 * 12 10 9 33 33 H 1.09007 * 113.57759 * 204.34370 * 12 10 9 34 34 H 0.97003 * 120.00244 * 286.01178 * 15 13 12 35 35 H 1.09002 * 109.47120 * 59.99760 * 18 16 15 36 36 H 1.08998 * 109.46862 * 300.00562 * 18 16 15 37 37 H 1.09002 * 109.47153 * 59.99773 * 19 18 16 38 38 H 1.09001 * 109.46832 * 299.99964 * 19 18 16 39 39 H 1.09001 * 109.47194 * 299.99650 * 20 19 18 40 40 H 1.08992 * 109.47399 * 59.99823 * 20 19 18 41 41 H 1.08001 * 126.91359 * 0.02562 * 22 21 20 42 42 H 1.08001 * 126.74690 * 180.12270 * 23 22 21 43 43 H 1.08999 * 113.65659 * 323.84127 * 27 26 13 44 44 H 1.08995 * 113.65961 * 94.89525 * 27 26 13 45 45 H 1.09001 * 113.57950 * 270.13156 * 28 27 26 46 46 H 1.09000 * 113.65129 * 139.34357 * 28 27 26 47 47 H 1.08996 * 113.66042 * 265.10053 * 29 26 13 48 48 H 1.08998 * 113.66037 * 36.06002 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 3.0460 -3.5759 -0.4528 12 6 2.0611 -4.3684 1.3657 13 6 0.7678 -5.0739 0.9188 14 1 -0.1398 -4.5291 1.1783 15 7 0.7100 -6.4888 1.2944 16 6 -0.0936 -6.8867 2.3006 17 8 -0.7685 -6.0733 2.8954 18 6 -0.1527 -8.3420 2.6874 19 6 -1.1337 -8.5220 3.8476 20 6 -1.1932 -9.9994 4.2406 21 7 -2.1330 -10.1718 5.3511 22 6 -3.1966 -11.0081 5.3671 23 6 -3.7820 -10.8506 6.5773 24 7 -3.0619 -9.9320 7.2308 25 7 -2.0921 -9.5498 6.4772 26 6 1.2352 -4.8392 -0.5180 27 6 0.2307 -4.6659 -1.6579 28 6 1.3044 -5.2714 -2.5802 29 6 1.8852 -5.9591 -1.3312 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3881 -0.0002 32 1 1.9202 -3.6932 2.2097 33 1 2.9033 -5.0469 1.5019 34 1 1.2501 -7.1394 0.8190 35 1 0.8383 -8.6771 2.9937 36 1 -0.4878 -8.9314 1.8339 37 1 -2.1246 -8.1870 3.5408 38 1 -0.7990 -7.9325 4.7011 39 1 -1.5277 -10.5893 3.3872 40 1 -0.2023 -10.3340 4.5474 41 1 -3.5135 -11.6698 4.5746 42 1 -4.6601 -11.3628 6.9419 43 1 -0.6588 -5.2873 -1.5553 44 1 -0.0016 -3.6247 -1.8817 45 1 1.9713 -4.5292 -3.0190 46 1 0.9055 -5.9693 -3.3163 47 1 2.9745 -5.9511 -1.2941 48 1 1.4616 -6.9442 -1.1356 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203026698.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:03 Heat of formation + Delta-G solvation = 114.361924 kcal Electronic energy + Delta-G solvation = -28050.015689 eV Core-core repulsion = 24143.958384 eV Total energy + Delta-G solvation = -3906.057305 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.49685 -40.64197 -39.12868 -36.18226 -35.07967 -34.09789 -32.98176 -32.28080 -31.30020 -29.73561 -28.02742 -25.59101 -24.78357 -24.22560 -23.60662 -22.92657 -22.30081 -21.39339 -20.40914 -20.24938 -18.25658 -17.70063 -17.16801 -16.90481 -16.65607 -16.02848 -16.01520 -15.25745 -15.17619 -14.84901 -14.70415 -14.26960 -14.21213 -13.84489 -13.21784 -12.91451 -12.82569 -12.70093 -12.43230 -12.27057 -12.16578 -11.97104 -11.87821 -11.64103 -11.42408 -11.35658 -11.13123 -10.92966 -10.86048 -10.77333 -10.41488 -10.16578 -10.09617 -9.87502 -9.85008 -9.67781 -9.58823 -9.49128 -8.89080 -8.65014 -7.01750 -5.80912 -3.10819 1.31286 2.00128 2.33281 2.67638 3.23329 3.41718 3.47246 3.49797 3.96009 4.21165 4.27879 4.43754 4.49344 4.68293 4.70054 4.72518 4.81198 4.85630 4.89611 4.92688 4.96673 5.13226 5.15982 5.29510 5.35562 5.42294 5.59022 5.61835 5.75420 5.82081 5.88353 5.89890 5.90649 5.96965 6.01632 6.06828 6.19493 6.25374 6.39259 6.52580 6.61851 6.67706 6.74631 6.83769 7.05729 7.62219 7.68513 8.25199 8.32034 8.37128 9.48386 10.04160 10.38501 11.41139 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015653 B = 0.002155 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.356997 B =12990.898820 C =14191.449311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.073 0.927 9 N -0.701 5.701 10 C 0.197 3.803 11 H 0.067 0.933 12 C -0.182 4.182 13 C 0.139 3.861 14 H 0.113 0.887 15 N -0.715 5.715 16 C 0.507 3.493 17 O -0.535 6.535 18 C -0.138 4.138 19 C -0.119 4.119 20 C 0.114 3.886 21 N -0.289 5.289 22 C -0.053 4.053 23 C -0.054 4.054 24 N -0.274 5.274 25 N -0.078 5.078 26 C -0.122 4.122 27 C -0.126 4.126 28 C -0.133 4.133 29 C -0.115 4.115 30 H 0.256 0.744 31 H 0.387 0.613 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.395 0.605 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.102 0.898 41 H 0.190 0.810 42 H 0.189 0.811 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.058 0.942 47 H 0.067 0.933 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.020 -27.518 0.749 27.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.207 4.207 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.091 0.909 9 N -0.339 5.339 10 C 0.083 3.917 11 H 0.085 0.915 12 C -0.225 4.225 13 C 0.035 3.965 14 H 0.131 0.869 15 N -0.366 5.366 16 C 0.292 3.708 17 O -0.411 6.411 18 C -0.179 4.179 19 C -0.158 4.158 20 C -0.007 4.007 21 N -0.083 5.083 22 C -0.204 4.204 23 C -0.212 4.212 24 N -0.140 5.140 25 N -0.058 5.058 26 C -0.125 4.125 27 C -0.164 4.164 28 C -0.171 4.171 29 C -0.153 4.153 30 H 0.066 0.934 31 H 0.221 0.779 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.230 0.770 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.099 0.901 38 H 0.111 0.889 39 H 0.125 0.875 40 H 0.120 0.880 41 H 0.207 0.793 42 H 0.206 0.794 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.100 0.900 46 H 0.077 0.923 47 H 0.086 0.914 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.635 -25.680 2.011 25.766 hybrid contribution -0.223 -0.352 -0.988 1.072 sum -0.858 -26.032 1.023 26.066 Atomic orbital electron populations 1.69676 1.05118 1.25746 1.57067 1.24773 0.95527 0.97798 1.02589 0.86106 0.78778 0.84011 0.77195 1.20506 1.21857 1.21799 1.19279 0.91088 0.83788 1.43330 0.90934 1.42117 1.05815 0.99124 1.86862 1.20677 0.94254 0.84646 0.92091 0.91545 1.24284 0.96128 0.99695 1.02344 1.22406 0.99744 0.79677 0.94662 0.86946 1.46082 1.44783 1.10340 1.35380 1.20465 0.79699 0.90376 0.80240 1.90773 1.42958 1.54926 1.52441 1.21557 1.01706 0.95076 0.99513 1.21610 1.01435 0.93179 0.99555 1.22218 0.92626 0.99928 0.85880 1.47545 1.20587 1.26706 1.13432 1.23715 0.92551 1.01648 1.02518 1.23655 1.03490 1.01234 0.92777 1.75156 1.02363 1.11780 1.24677 1.78365 1.18635 1.17731 0.91112 1.23595 0.98516 0.98300 0.92047 1.22636 0.96026 1.02357 0.95351 1.22739 0.98978 0.99602 0.95755 1.22521 0.99899 0.96526 0.96334 0.93415 0.77857 0.90910 0.91319 0.77031 0.88447 0.88681 0.90085 0.88950 0.87493 0.88019 0.79305 0.79409 0.91114 0.89899 0.90019 0.92277 0.91407 0.90777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.87 13.06 55.49 0.72 -27.15 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 7 C -0.24 -6.62 9.98 -15.06 -0.15 -6.77 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.70 -17.03 4.91 -52.89 -0.26 -17.29 16 10 C 0.20 3.73 4.36 -67.38 -0.29 3.43 16 11 H 0.07 1.26 8.12 -51.93 -0.42 0.84 16 12 C -0.18 -3.15 7.68 -25.74 -0.20 -3.35 16 13 C 0.14 2.22 4.02 -67.48 -0.27 1.95 16 14 H 0.11 2.24 7.50 -51.93 -0.39 1.85 16 15 N -0.72 -8.49 5.27 -53.37 -0.28 -8.77 16 16 C 0.51 6.41 7.83 -10.99 -0.09 6.32 16 17 O -0.53 -9.72 15.60 5.56 0.09 -9.63 16 18 C -0.14 -0.94 5.70 -27.89 -0.16 -1.10 16 19 C -0.12 -0.98 4.63 -26.73 -0.12 -1.11 16 20 C 0.11 0.59 6.46 -4.04 -0.03 0.57 16 21 N -0.29 -2.52 3.44 -61.26 -0.21 -2.73 16 22 C -0.05 -0.36 11.57 -17.05 -0.20 -0.56 16 23 C -0.05 -0.47 12.05 -17.74 -0.21 -0.68 16 24 N -0.27 -3.54 12.41 30.23 0.38 -3.17 16 25 N -0.08 -1.00 12.91 60.35 0.78 -0.22 16 26 C -0.12 -1.84 0.92 -154.60 -0.14 -1.98 16 27 C -0.13 -1.93 7.60 -26.28 -0.20 -2.13 16 28 C -0.13 -1.69 8.08 -25.75 -0.21 -1.90 16 29 C -0.11 -1.31 7.16 -26.28 -0.19 -1.50 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.39 10.13 7.46 -40.82 -0.30 9.83 16 32 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.40 3.36 6.98 -40.82 -0.28 3.08 16 35 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 38 H 0.09 1.04 8.07 -51.93 -0.42 0.62 16 39 H 0.11 0.19 8.07 -51.93 -0.42 -0.23 16 40 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.19 0.43 8.06 -52.49 -0.42 0.01 16 42 H 0.19 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.08 1.54 7.50 -51.93 -0.39 1.15 16 45 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.07 0.67 6.99 -51.93 -0.36 0.31 16 LS Contribution 396.33 15.07 5.97 5.97 Total: -1.00 -36.37 396.33 -8.00 -44.36 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -7.61 Total: 10.57 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -2.55 Total: -9.19 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: 1.13 Total: -59.33 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.09 Total: -9.63 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.37 -8.00 -44.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203026698.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.725 kcal (2) G-P(sol) polarization free energy of solvation -36.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds