Wall clock time and date at job start Tue Mar 31 2020 18:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99929 * 2 1 4 4 H 1.48500 * 109.47009 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47105 * 299.99584 * 3 2 1 6 6 H 1.48493 * 109.47245 * 59.99643 * 3 2 1 7 7 C 1.38809 * 119.99739 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99830 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00439 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00101 * 179.97438 * 9 7 2 11 11 H 1.08995 * 112.88954 * 333.16107 * 10 9 7 12 12 C 1.53955 * 113.65857 * 104.50792 * 10 9 7 13 13 C 1.53946 * 87.29459 * 89.73555 * 12 10 9 14 14 H 1.08994 * 113.66527 * 270.16427 * 13 12 10 15 15 N 1.46505 * 113.66164 * 139.20501 * 13 12 10 16 16 C 1.34777 * 120.00115 * 106.01148 * 15 13 12 17 17 O 1.21282 * 119.99620 * 359.97438 * 16 15 13 18 18 C 1.50697 * 120.00369 * 180.02562 * 16 15 13 19 19 C 1.52997 * 109.47466 * 180.02562 * 18 16 15 20 20 C 1.53000 * 109.47060 * 180.02562 * 19 18 16 21 21 N 1.46499 * 109.46840 * 180.02562 * 20 19 18 22 22 C 1.35313 * 125.87097 * 124.71490 * 21 20 19 23 23 C 1.35353 * 106.17700 * 179.90308 * 22 21 20 24 24 N 1.33768 * 106.49406 * 0.35174 * 23 22 21 25 25 N 1.28629 * 108.88677 * 359.77469 * 24 23 22 26 26 C 1.52906 * 86.88641 * 24.69132 * 13 12 10 27 27 C 1.52915 * 121.14142 * 209.42908 * 26 13 12 28 28 C 1.53952 * 86.78303 * 209.37125 * 27 26 13 29 29 C 1.52909 * 121.14480 * 100.86136 * 26 13 12 30 30 H 0.97000 * 119.99943 * 0.02562 * 1 2 3 31 31 H 0.96996 * 119.99807 * 0.02562 * 9 7 2 32 32 H 1.08997 * 113.57838 * 335.13048 * 12 10 9 33 33 H 1.09007 * 113.57759 * 204.34370 * 12 10 9 34 34 H 0.97003 * 120.00244 * 286.01178 * 15 13 12 35 35 H 1.09002 * 109.47120 * 59.99760 * 18 16 15 36 36 H 1.08998 * 109.46862 * 300.00562 * 18 16 15 37 37 H 1.09002 * 109.47153 * 59.99773 * 19 18 16 38 38 H 1.09001 * 109.46832 * 299.99964 * 19 18 16 39 39 H 1.09001 * 109.47194 * 299.99650 * 20 19 18 40 40 H 1.08992 * 109.47399 * 59.99823 * 20 19 18 41 41 H 1.08001 * 126.91359 * 0.02562 * 22 21 20 42 42 H 1.08001 * 126.74690 * 180.12270 * 23 22 21 43 43 H 1.08999 * 113.65659 * 323.84127 * 27 26 13 44 44 H 1.08995 * 113.65961 * 94.89525 * 27 26 13 45 45 H 1.09001 * 113.57950 * 270.13156 * 28 27 26 46 46 H 1.09000 * 113.65129 * 139.34357 * 28 27 26 47 47 H 1.08996 * 113.66042 * 265.10053 * 29 26 13 48 48 H 1.08998 * 113.66037 * 36.06002 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 3.0460 -3.5759 -0.4528 12 6 2.0611 -4.3684 1.3657 13 6 0.7678 -5.0739 0.9188 14 1 -0.1398 -4.5291 1.1783 15 7 0.7100 -6.4888 1.2944 16 6 -0.0936 -6.8867 2.3006 17 8 -0.7685 -6.0733 2.8954 18 6 -0.1527 -8.3420 2.6874 19 6 -1.1337 -8.5220 3.8476 20 6 -1.1932 -9.9994 4.2406 21 7 -2.1330 -10.1718 5.3511 22 6 -3.1966 -11.0081 5.3671 23 6 -3.7820 -10.8506 6.5773 24 7 -3.0619 -9.9320 7.2308 25 7 -2.0921 -9.5498 6.4772 26 6 1.2352 -4.8392 -0.5180 27 6 0.2307 -4.6659 -1.6579 28 6 1.3044 -5.2714 -2.5802 29 6 1.8852 -5.9591 -1.3312 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3881 -0.0002 32 1 1.9202 -3.6932 2.2097 33 1 2.9033 -5.0469 1.5019 34 1 1.2501 -7.1394 0.8190 35 1 0.8383 -8.6771 2.9937 36 1 -0.4878 -8.9314 1.8339 37 1 -2.1246 -8.1870 3.5408 38 1 -0.7990 -7.9325 4.7011 39 1 -1.5277 -10.5893 3.3872 40 1 -0.2023 -10.3340 4.5474 41 1 -3.5135 -11.6698 4.5746 42 1 -4.6601 -11.3628 6.9419 43 1 -0.6588 -5.2873 -1.5553 44 1 -0.0016 -3.6247 -1.8817 45 1 1.9713 -4.5292 -3.0190 46 1 0.9055 -5.9693 -3.3163 47 1 2.9745 -5.9511 -1.2941 48 1 1.4616 -6.9442 -1.1356 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203026698.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:03 Heat of formation + Delta-G solvation = 86.842565 kcal Electronic energy + Delta-G solvation = -28051.209018 eV Core-core repulsion = 24143.958384 eV Total energy + Delta-G solvation = -3907.250634 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.13384 -41.89043 -40.22253 -36.80900 -36.48439 -35.61047 -34.12174 -33.47880 -31.91998 -31.56447 -28.73265 -26.74997 -26.32975 -25.52920 -24.78113 -23.75711 -23.35343 -22.04658 -21.68066 -21.24679 -19.51633 -18.98390 -18.50138 -17.77338 -17.46100 -17.18739 -16.75629 -16.69068 -16.21967 -15.85141 -15.77957 -15.44285 -15.23601 -14.96359 -14.74978 -14.30259 -13.93372 -13.61135 -13.53720 -13.27930 -13.14108 -13.08365 -12.86862 -12.86316 -12.69131 -12.58446 -12.54001 -12.17157 -11.99966 -11.98160 -11.80451 -11.74690 -11.31907 -11.24071 -11.06910 -10.92224 -10.80148 -10.67137 -10.30144 -9.84888 -9.03296 -7.97984 -5.27077 0.72065 1.44031 1.45562 1.54539 1.55342 1.66586 1.70151 2.29087 2.52118 3.33940 3.41672 3.50031 3.56816 3.68782 3.76196 3.79478 3.87965 3.97616 4.03862 4.17765 4.20460 4.22127 4.28301 4.36302 4.37647 4.44132 4.58418 4.65298 4.67208 4.80773 4.83105 4.86030 4.91283 5.02897 5.06963 5.12407 5.15929 5.20584 5.25644 5.32168 5.33868 5.47464 5.51524 5.61830 5.75131 5.76795 6.24228 6.67919 7.29183 7.39628 7.57281 8.05938 8.27503 9.25640 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015653 B = 0.002155 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.356997 B =12990.898820 C =14191.449311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.974 3.026 4 H -0.262 1.262 5 H -0.292 1.292 6 H -0.298 1.298 7 C -0.239 4.239 8 H 0.081 0.919 9 N -0.717 5.717 10 C 0.175 3.825 11 H 0.071 0.929 12 C -0.172 4.172 13 C 0.148 3.852 14 H 0.060 0.940 15 N -0.697 5.697 16 C 0.497 3.503 17 O -0.603 6.603 18 C -0.120 4.120 19 C -0.115 4.115 20 C 0.113 3.887 21 N -0.289 5.289 22 C -0.031 4.031 23 C -0.074 4.074 24 N -0.324 5.324 25 N -0.135 5.135 26 C -0.110 4.110 27 C -0.137 4.137 28 C -0.126 4.126 29 C -0.091 4.091 30 H 0.250 0.750 31 H 0.371 0.629 32 H 0.029 0.971 33 H 0.105 0.895 34 H 0.419 0.581 35 H 0.134 0.866 36 H 0.144 0.856 37 H 0.053 0.947 38 H 0.048 0.952 39 H 0.158 0.842 40 H 0.122 0.878 41 H 0.242 0.758 42 H 0.215 0.785 43 H 0.083 0.917 44 H 0.036 0.964 45 H 0.066 0.934 46 H 0.087 0.913 47 H 0.086 0.914 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.909 -32.515 -1.462 32.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.803 3.197 4 H -0.186 1.186 5 H -0.220 1.220 6 H -0.226 1.226 7 C -0.370 4.370 8 H 0.099 0.901 9 N -0.354 5.354 10 C 0.064 3.936 11 H 0.089 0.911 12 C -0.214 4.214 13 C 0.042 3.958 14 H 0.079 0.921 15 N -0.349 5.349 16 C 0.285 3.715 17 O -0.484 6.484 18 C -0.160 4.160 19 C -0.154 4.154 20 C -0.006 4.006 21 N -0.083 5.083 22 C -0.183 4.183 23 C -0.232 4.232 24 N -0.189 5.189 25 N -0.114 5.114 26 C -0.112 4.112 27 C -0.175 4.175 28 C -0.163 4.163 29 C -0.129 4.129 30 H 0.059 0.941 31 H 0.203 0.797 32 H 0.048 0.952 33 H 0.124 0.876 34 H 0.258 0.742 35 H 0.152 0.848 36 H 0.162 0.838 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.176 0.824 40 H 0.140 0.860 41 H 0.258 0.742 42 H 0.231 0.769 43 H 0.101 0.899 44 H 0.055 0.945 45 H 0.085 0.915 46 H 0.106 0.894 47 H 0.104 0.896 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.394 -30.747 -0.218 30.780 hybrid contribution -0.864 1.127 -0.315 1.454 sum 0.530 -29.621 -0.533 29.630 Atomic orbital electron populations 1.69850 1.06775 1.25942 1.59594 1.25613 0.96355 1.01297 1.03825 0.85054 0.78411 0.79724 0.76469 1.18591 1.21964 1.22563 1.19706 0.91576 0.84972 1.40774 0.90147 1.42271 1.05278 1.00599 1.87258 1.20988 0.94692 0.84073 0.93835 0.91067 1.24165 0.98315 0.99545 0.99407 1.21802 0.96780 0.81815 0.95417 0.92142 1.45814 1.44989 1.08717 1.35416 1.21663 0.78118 0.92649 0.79023 1.90766 1.45618 1.57419 1.54585 1.21591 1.03394 0.90577 1.00418 1.21470 1.00233 0.95117 0.98614 1.22552 0.93619 0.97933 0.86467 1.47888 1.21309 1.26089 1.13007 1.24517 0.90603 1.00440 1.02729 1.24309 1.04333 1.00850 0.93723 1.75067 1.03601 1.13702 1.26494 1.78297 1.19930 1.20121 0.93090 1.23415 0.98278 0.98035 0.91514 1.22694 0.97557 1.00228 0.96978 1.22691 0.97356 0.99642 0.96613 1.22570 1.00988 0.96337 0.92980 0.94137 0.79667 0.95170 0.87630 0.74199 0.84774 0.83839 0.92844 0.93345 0.82407 0.85958 0.74178 0.76860 0.89882 0.94462 0.91498 0.89401 0.89551 0.86811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.56 13.06 21.65 0.28 -61.28 16 2 C -0.08 -4.64 5.50 84.86 0.47 -4.18 16 3 Si 0.97 47.26 29.55 68.60 2.03 49.29 16 4 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 6 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 7 C -0.24 -13.41 9.98 84.03 0.84 -12.57 16 8 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 9 N -0.72 -36.76 4.91 -321.25 -1.58 -38.34 16 10 C 0.17 6.72 4.36 45.35 0.20 6.92 16 11 H 0.07 2.64 8.12 -2.39 -0.02 2.62 16 12 C -0.17 -6.01 7.68 31.23 0.24 -5.77 16 13 C 0.15 4.75 4.02 45.28 0.18 4.93 16 14 H 0.06 2.62 7.50 -2.39 -0.02 2.60 16 15 N -0.70 -14.78 5.27 -441.16 -2.33 -17.10 16 16 C 0.50 11.93 7.83 87.66 0.69 12.62 16 17 O -0.60 -23.19 15.60 -3.04 -0.05 -23.24 16 18 C -0.12 -1.14 5.70 29.85 0.17 -0.97 16 19 C -0.12 -1.74 4.63 30.59 0.14 -1.60 16 20 C 0.11 0.74 6.46 86.38 0.56 1.29 16 21 N -0.29 -4.51 3.44 -347.74 -1.20 -5.70 16 22 C -0.03 -0.32 11.57 83.49 0.97 0.64 16 23 C -0.07 -1.20 12.05 83.73 1.01 -0.19 16 24 N -0.32 -8.68 12.41 -58.26 -0.72 -9.40 16 25 N -0.14 -3.55 12.91 37.02 0.48 -3.08 16 26 C -0.11 -3.19 0.92 -52.24 -0.05 -3.24 16 27 C -0.14 -4.16 7.60 30.89 0.23 -3.92 16 28 C -0.13 -2.81 8.08 31.23 0.25 -2.56 16 29 C -0.09 -1.64 7.16 30.89 0.22 -1.42 16 30 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 31 H 0.37 21.05 7.46 -92.71 -0.69 20.35 16 32 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.11 2.87 8.14 -2.38 -0.02 2.85 16 34 H 0.42 4.83 6.98 -92.71 -0.65 4.18 16 35 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.14 0.10 8.14 -2.39 -0.02 0.08 16 37 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 38 H 0.05 1.16 8.07 -2.39 -0.02 1.14 16 39 H 0.16 -0.54 8.07 -2.39 -0.02 -0.56 16 40 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 41 H 0.24 -0.32 8.06 -2.91 -0.02 -0.35 16 42 H 0.21 1.88 8.06 -2.91 -0.02 1.85 16 43 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.04 1.47 7.50 -2.39 -0.02 1.45 16 45 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.11 1.23 6.99 -2.39 -0.02 1.22 16 Total: -1.00 -93.78 396.33 2.67 -91.11 By element: Atomic # 1 Polarization: 28.11 SS G_CDS: -0.36 Total: 27.75 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: 6.12 Total: -10.01 kcal Atomic # 7 Polarization: -129.84 SS G_CDS: -5.06 Total: -134.90 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.05 Total: -23.24 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -93.78 2.67 -91.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203026698.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.951 kcal (2) G-P(sol) polarization free energy of solvation -93.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds